Expansive soils have damage light structures due to movement of soil which was a common problem all around the world. Soils exhibiting expansive properties were common throughout Australia. The damage to light structures founded on expansive soils in Victoria occurred mainly in properties built on quaternary basaltic clays and Tertiary to Ordovician clays. A review of existing literature in the area of expansive soils showed a lack of a thorough scientific diagnostic of the damage to light structures founded on expansive soils. Very few studies had been performed on damage to light structures on expansive soils in Victoria. There were no models so far to predict damage condition to light structures. More over, most of the reports on damage to light structures on expansive soils in Victoria were poorly documented. The aim of this research project was to develop a model to predict the damage condition of light structure on expansive soils in Victoria. A hybrid Neural Network trained with Genetic Algorithm was adopted for the de-velopment of the Predictive Damage Condition model. The Neural Network and Ge-netic Algorithm toolboxes from MATLAB� version 7.1 were used. The development of a Predictive Damage Condition model was driven by the shortage of defined quanti-tative studies and methods of selecting the factors that influenced the damage to light structure on expansive soils. The data used was based on information extracted from the Building Housing Commission which was recorded by different engineering companies based only on the tenants complain and site investigation of the properties. A series of factors that were believed to be dominant in influencing damage to light structures were chosen including: structural type, foundation, the presence of vegetation, soil type, age, and climate change. The model showed that it was able to resolve the problems facing light structures on expansive soils. First and foremost, the Predictive Damage Condition model was able to predict the damage condition or damage class using different combinations of fac-tors. It was also possible to identify the factors contributing to the damage of the struc-ture and to assess their relative importance in causing damage to light structures on expansive soil. It was found that the construction footing and vegetation were the most important among all the other input parameters. Change in Thornthwaite Moisture In-dex or climate was ranked second. Construction wall and age, were ranked third and fourth respectively while both region and geology were ranked fifth. In addition, Change in Thornthwaite Moisture Index was noted to have the strongest correlation with other input parameters.

Traumatic brain injury (TBI) today remains a major health and social problem for both developed and developing countries. It is the leading cause of death and disability under the age of 40, and despite the significance of this public health problem, no effective therapy exists. While a number of factors have been shown to be associated with the development of irreversible tissue injury after TBI, the formation of oedema and opening of the blood brain barrier (BBB) have been shown to be of major significance to outcome. Oedema formation in the brain, when left uncontrolled, results in increased intracranial pressure that may lead to a decrease in brain tissue perfusion, localised hypoxia and ischemia, and ultimately tissue herniation and death. The mechanisms associated with the development of oedema are largely unclear, and accordingly, current therapies are generally ineffective, often resulting in dehydration, hypotension and renal problems. This thesis describes the characterisation of neurogenic inflammation in the development of post-traumatic brain oedema and functional deficits, and particularly the role of substance P (SP) in mediating their development, using rodent models of both focal and diffuse TBI. Results from this thesis demonstrate that increased SP immunoreactivity, particularly at the level of the vasculature, is a ubiquitous feature of TBI implying a potential role in the breakdown of the blood brain barrier (BBB) following TBI. This was confirmed through the use of the NK[subscript 1] receptor antagonists, which attenuated BBB and oedema formation as well as deleterious morphological events such as dark cell change and axonal injury. The NK[subscript 1] receptor antagonists also resulted in an associated improvement in both motor and cognitive deficits, as assessed using a battery of functional outcome tests. Possible mechanisms of action of the NK[subscript 1] receptor antagonist included effects on the BBB, SP release, intracellular free magnesium concentration and aquaporin-4 channels. Neuroprotection could be facilitated with administration of a non-lipid permeable NK[subscript 1] receptor antagonist in the immediate postinjury period, or up to 12 h after TBI with a lipid permeable NK[subscript 1] receptor antagonist, suggesting that this class of drugs have a clinically viable therapeutic window. We conclude that SP has a significant role in the secondary injury process following TBI and may offer a novel target for the development of interventional pharmacological strategies. / Thesis (Ph.D.)--School of Medical Sciences, 2006.

Thesis (MA(Counselling Psychology)--University of Pretoria, 2006. / Includes bibliographical references (leaves 101-110).

Thesis (Ph. D.)--University of Hong Kong, 2006. / Title proper from title frame. Also available in printed format.

Wurtzite GaN epilayers grown by metal organic chemical vapor deposition on sapphire substrates were subsequently ion implanted with Er to a dose of 5×10¹⁵ cm⁻². The implanted samples were annealed in nitrogen atmosphere at different temperatures to facilitate recovery from implantation related damage. In this paper we report the annealing behavior of Erbium implanted GaN by using micro Raman spectroscopy and optimized annealing condition. We have observed almost full damage recovery of the crystalline quality of Er implanted GaN after annealing at 1000°C for 2 minute. This observation is further confirmed by using AFM images. / Singapore-MIT Alliance (SMA)

Based on the underlying structure of fabric materials, a three-scale model is constructed to describe the mechanical behavior of fabric materials. The current model assumes that fabric materials take on an overall behavior of anisotropic membranes, so membrane scale is taken as the macroscopic or continuum scale of the model. Following the membrane scale, yarn scale is introduced, in which yarns and their weaving structure are accounted for explicitly and the yarns are modeled as extensible elasticae. A unit cell consisting of two overlapping yarns is used to formulate the weaving patterns of yarns, which governs the constitutive nonlinear behavior of fabric materials. The third scale, named fibril scale, zooms to the fibrils inside a yarn and incorporates its material properties. Via a coupling process between these three scales, the overall behavior and performance of the complex fabric products become predictable by knowing the material properties of a single fibril and the weaving structure of the fabrics. In addition, potential damage during deformation is also captured in the current model through tracking the deformation of yarns in fibril scale. Based on the multi-scale model, both static and dynamic simulations were implemented. Comparison between the static simulations and experiment demonstrates the model abilities as desired. Through the dynamic simulations, parameter research was conducted and indicates the ballistic performance and mechanical behavior of the fabric materials are determined by a combination of various factors and conditions rather than the material properties alone. Factors such as boundary conditions, material orientation and projectile shapes etc. affect the damage patterns and energy absorption of the fabric. / Mechanical Engieering

DNA is the central storage molecule for genetic information in the cell. Therefore, the DNA must be protected from damage that will otherwise be passed on to future generations as deleterious mutations. Although many different pathways have evolved for repairing different classes of damage there are certain features that are common to all repair pathways. Generically, for DNA damage to be repaired it must first be recognized, then excised and replaced with undamaged DNA. DNA damage recognition is highly varied since specific interactions are required between the protein and the damaged DNA. DNA damage repair, paradoxically, requires the action of highly processive nucleases. The nucleases may digest hundreds if not thousands of nucleotides, sometimes for the repair of a single mutant nucleotide. We have chosen to focus on Exonuclease VII (ExoVII), one of the processive nucleases that have been implicated in the process of Mismatch Repair (MMR). ExoVII is a hetero-pentameric enzyme composed of one large subunit (XseA) and four small subunits (XseB). It has been previously characterized as a processive, single-strand specific nuclease able to digest DNA in either the 5'->3' or 3'->5' direction by a metalindependent mechanism. Early studies have shown that although ExoVII is a hydrolytic nuclease it was completely active in the presence of large amounts of EDTA and was strongly stimulated by phosphate. This feature is unusual because hydrolytic DNA nucleases typically function by a mechanism that requires coordination of a divalent cation. To further our understanding of the mechanism ExoVII we have identified and characterized the ExoVII homolog from Thermotoga maritima (T. maritima, Tm), a hyperthermophilic bacterium. The genes responsible for Tm ExoVII (TM1768 and TM1769) were cloned into an overexpression construct and the resulting proteins were overexpressed, co-purified and characterized. Consistent with previous studies, we found that Tm ExoVII is a processive, single-strand specific nuclease. Surprisingly, unlike Ec ExoVII, the T. maritima homolog was found to have an absolute requirement for the divalent cation magnesium and was strongly inhibited by the presence of either phosphate or sulfate in the reaction buffer. Using multiple sequence alignments of the large subunit we have identified a conserved core present within the C-terminal ExoVII_Large domain. This conserved core, RGGGx27GHx2Dx4Dx9P, although unique among nucleases, is reminiscent of a metal-coordinating hydrolytic active site. We have tested this putative active site using site-directed mutagenesis to create the TmD235A/TmD240A double mutant. This mutant protein was purified and the resulting protein was found to be inactive. We propose that this conserved core represents the metal-coordinating active site of all ExoVII homologs and that the group of E. coli-like homologs are unique in their EDTA resistance and anion (phosphate and sulfate) stimulation. Since ExoVII is a bi-directional nuclease (both 5'->3' and 3'->5' activity), and MMR is a bi-directional process, our model was that ExoVII was the primary nuclease associated with MMR. To test this model and determine if, in fact, a minimal conserved MMR pathway can be defined, we performed an analysis of the genomic occurrence profiles for the genes involved in MMR. To do this we have developed a bioinformatic application, Magma, which assists in the creation of a searchable relational database. Using Magma we have found that MutH, the enzyme responsible for generating a nick that directs MMR to excise the newly synthesized DNA strand including a DNA mispair, is only present in E. coli and a subset of gamma-proteobacteria, suggesting that MutH is not a core component of MMR. Instead, most organisms employ a nicking activity found in the MutL subunit. We also show that, although four nucleases have been implicated as having "redundant" roles in bacterial mismatch repair, RecJ is the primary nuclease responsible for degrading the mutated DNA strand and that 5'->3' single-strand exonuclease activity is a core MMR component. From this analysis, it appears that prokaryotic mismatch repair is more similar to eukaryotic mismatch repair than was previously thought, from the genetic and biochemical work done in E. coli. We offer a model for a universal minimal MMR system.

In the fission yeast, Schizosacchromyces pombe, blocks to DNA replication elongation trigger the intra-S phase checkpoint that leads to the activation of the Cds1 kinase. Cds1 is required to both stabilize stalled replication forks and to prevent premature entry into mitosis. Interestingly, although Cds1 is essential to maintain the viability of mutants defective in DNA replication elongation, my study shows that mutants defective in DNA replication initiation require the Chk1 kinase, rather than Cds1. This suggests that failed initiation events can lead to activation of the DNA damage checkpoint independent of the intra-S phase checkpoint. This might result from reduced origin firing that leads to an increase in replication fork stalling or replication fork collapse that activates the G2 DNA damage checkpoint. I refer to the Chk1-dependent, Cds1-independent phenotype as the rid phenotype (for replication initiation defective). The data shows that Chk1 is active in rid mutants when grown under semi-permissive conditions, and rid mutant viability is dependent on the DNA damage checkpoint, and surprisingly Mrc1, an adaptor protein required for activation of Cds1. Mutations in Mrc1 that prevent activation of Cds1 have no effect on its ability to support rid mutant viability, suggesting that Mrc1 has a checkpoint-independent role in maintaining the viability of mutants defective in DNA replication initiation. Like Mrc1, Swi1 and Swi3 have been hypothesized as a part of the replication fork protection complex (RFPC). They are required for maintaining the viability of rid mutants, but are not essential for activation of Chk1 in response to failed initiation events. This suggests that Mrc1 in conjunction with Swi1 and Swi3 function in a similar pathway to alleviate replicative stress resulting from defects in DNA replication initiation. Using flow cytometry, I demonstrate that inhibition of DNA replication initiation has no significant impact on the duration of S phase, suggesting dormant origins might be activated in response to defects in DNA replication initiation. Fission yeast Rad22 is implicated in forming nuclear foci in response to damaged DNA. By tracking YFP-labeled Rad22, I screened for potential DNA damage in rid mutants grown at semi-permissive temperatures, and the results show that DNA damage occurs as the result of defects in DNA replication initiation. I also identified camptothecin, a DNA topoisomerase I inhibitor that can at low dose (2 µM) induce the rid phenotype, suggesting our assay (Chk1-dependent, Cds1-independent) can be used to screen small molecule inhibitors that interfere with the initiation step of DNA replication.

Thesis (Ph. D.)--University of Rhode Island, 2005. / Typescript. Includes bibliographical references (leaves 126-134).

When nuclear fuel, fabricated for the purpose of transmuting spent fuel is irradiated, significant amounts of He is produced from alpha particles mainly emitted when 242Cm decays into 238Pu. From irradiation experiments it is known that the presence of He in the solids alters the swelling behaviour of the material. The thesis presents the theoretical background from which nucleation models of He bubbles can be formulated. Such models are presented for He in metals, and the case of He in Mo is studied as an example. MgO, which together with Mo is suggested as a matrix material in transmutation fuel is also studied and the stability of He containing bubbles in this material is discussed. By calculating parameters for a rate theory model derived from atomistic modelling, it is shown that He can stabilise vacancy clusters and cause cluster growth at temperatures and irradiation doses where nucleation and growth would not otherwise occur. At the initial stages of nucleation He can stabilise small bubbles while larger bubbles are unstable. This results in an incubation time of swelling, which implies that He does not always cause increased swelling, but can at certain irradiation conditions slow down the growth of large vacancy clusters and thereby delay swell\-ing beyond the time of the irradiation. When comparing the behaviour of bubble nucleation in Mo and MgO, it is found that He has a significant impact even at very low concentrations in Mo. In contrast, the concentration of He has to be considerably higher in MgO to affect the swelling behaviour. For an inert matrix fuel, designed for transmutation purposes, this implies that the Mo matrix will have a tendency to swell considerably at rather high temperatures due to He stabilised vacancy clusters. If operated at lower temperatures, the swelling could instead be reduced due to the incubation time. In a MgO matrix, the swelling behaviour will instead depend largely on the production rate of He. For a low production rate, the material will have a swelling behaviour similar to the one seen when He is not present in the material. A high production rate implies that He will remain in vacancy clusters, thereby stabilising the clusters and enhancing the growth and swelling.