The Greater Cape Floristic Region (GCFR) of South Africa has one of the most biodiverse floras in the world. Although ecological speciation is thought to be a primary mechanism behind diversification in the GCFR, it has recently been hypothesised that non-ecological speciation may have an influential role in driving diversification in the montane “sky islands” of the GCFR, potentially resulting in cryptic species. This work seeks to test the relative importance of ecological versus non-ecological processes in powering speciation at different elevations in the GCFR, and to assess the existence of multiple, range-restricted cryptic species at high elevations. The Cape grass genus Ehrharta is an ideal system in which to investigate these processes, as it contains low-, mid-, and high-elevation lineages, with a previously documented adaptive radiation in the succulent karoo. Population-level phylogenetic analyses using targeted enrichment sequencing data show that E. rupestris and E. setacea, as currently defined, are polyphyletic, and reveal multiple distinct monophyletic lineages within the Ramosa, Rehmannii and Setacea clades of genus Ehrharta. Analysis of genotyping-by-sequencing and morphological data, together with evidence of sympatry, confirm these lineages to be distinct entities, resulting in 13 to 16 putative new species, of which several can be considered cryptic. The crown node of Ehrharta is found to have originated 28 Ma, which substantially antedates previous age estimates. Comparisons of morphological evolutionary rates, as well as rates of nonsynonymous to synonymous sequence evolution (��), provide little evidence to support the hypothesis that non-ecological processes have been more important at high elevations. Both the low- and high-elevation clades show evidence of divergent ecological selection, with the Lowlands clade exhibiting high functional trait variance, and the high-elevation Setacea clade showing subtle ecological differentiation and accelerated rates of morphological evolution and �� relative to the rest of Cape Ehrharta. It is instead suggested that diversification in the Cape Ehrharta is triggered by a combination of intrinsic and extrinsic factors unique to each clade, thus corroborating a growing body of research arguing that it is simplistic to generalise radiations as ‘adaptive’ or ‘non-adaptive’. Instead, mountain radiations require an integrated approach to untangle the subtle interaction of geographic, ecological and biological factors that drive diversification.

The Guadalupe Nipomo Dunes Complex (GNDC) is located within the California Floristic Province, a biodiversity hotspot characterized by high rates of endemism and exceptional loss of habitat. In 1980, the US Fish and Wildlife Service described the GNDC as, “the most unique and fragile ecosystem in the State of California,” and ranked it first on a list of 49 habitat areas needing state protection. It is the largest coastal dune area in California and it is one of the last remaining, relatively intact ecosystems of its type and size in the western United States. The growing recognition of species decline and the limited number of dollars allocated to conservation and restoration have led to development of new conservation planning software and conservation strategies. Marxan and Zonation were selected for this project due to their worldwide acceptance in biodiversity conservation planning as well as their specialization in identifying priority zones for conservation. This document describes the unique use of conservation planning software to select areas for resource allocation. It outlines the process of selecting conservation targets, the habitats and species important to overall health of an ecosystem, by using the expert involvement approach. Most importantly, this document outlines areas of high biodiversity that will later be used to allocate resources for the preservation and protection of biodiversity within the Guadalupe Nipomo Dunes Complex. Introduced species are the second-leading cause (after habitat degradation/loss), causing or contributing to the decline in species abundance and diversity. Ehrharta calycina Smith has become highly invasive in the coastal dune communities of Central and Southern California and currently holds a “high” CAL-IPC inventory rating, defined as a species with severe ecological impacts on physical processes, plant and animal communities and vegetation structure as well as reproductive biology and other attributes conducive to moderate to high rates of dispersal and establishment. Ehrharta calycina is a prolific seeder and stores its seeds annually in the soil, collecting a substantial seedbank. Little is known about E.calycina outside its native range, as its invasion into California coastal ecosystem is fairly recent. A field experiment in the Guadalupe Nipomo Dunes Complex assessed the contribution of seeds originating from the seedbank as compared to seeds from above ground either dropping from maternal plants or blown in from outside the plots to the establishment of new E. calycina cover. After a nine month perios, new E. calycina cover from both sources was not significantly different. Visible coverage of E. calycina began 77 days (November 24, 2015) after plot installation. After nine months of surveying, coverage reached 19% in the Seedbank Present treatment and 21% in the Seedbank Absent treatment. There was no significant effect associated with the slope and aspect of the experimental locations. This experiment will aid in management of this invasive species by educating land managers to focus on preventing current seed production of established individuals as those sources of seed were as important as those originating in the seedbank. Stimulating germination of seeds from the seedbank with a concomitant management strategy such as herbicide application or physical removal will likely be the most effective methods for dealing with seeds in the seedbank.