The objective of this study was to develop and implement an advanced generation breeding programme at the Institute for Commercial Forestry Research (ICFR) to manage and integrate the many and disjunct breeding and production populations of Eucalyptus nitens established by various entities over the past 30 years at multiple sites in South Africa. To develop such a breeding strategy, a good understanding of the population genetics, and the underlying assumptions made by tree breeders about the species, was needed. Eucalyptus nitens is an important forestry species grown for pulp and paper production in the temperate, summer rainfall regions of South Africa. A tree improvement programme has been ongoing at the ICFR for three decades. The measurement and statistical analysis of data from eight F1 trials established during the 1980s and 1990s have enabled characterisation of the ICFR’s breeding population. Provenance testing showed that the more northerly New South Wales (Australia) Eucalyptus nitens provenances of Barren Mountain and Barrington Tops are distinctly better suited to growth in South Africa than the southern New South Wales provenances and the Victorian provenances, Penny Saddle and Bendoc. Generally, the species was not badly affected by Coniothyrium canker. High Type B genetic correlations for all sites pairs, except one comparison, ranged from 0.75 to 0.99 for diameter at breast height at 76 to 113 months, indicating very little, or no, genotype by environment interaction for diameter at breast height for the genotypes tested in the F1 generation. Narrow sense heritability estimates ranged from 0.01 to 0.34, indicating that the species provides a breeding opportunity for improvement of diameter growth. High genetic correlations of greater than 0.90 between diameter measurements at 52 to 62 months after establishment and diameter measurements at 94 or 113 months were found, indicating that selections can be made reliably at five or six years. Diameter measurements at both 60 months and full rotation (94 to 113 months) were highly correlated with the final height measurements in these trial series (rg > 0.71 and > 0.83, respectively). Predicted genetic gains for the F2 over the F1 generation were highest in the trials at Goedehoop and Arthur’s Seat, with predicted increases in diameter at breast height of 3.07 cm (17.1%) and 3.17 cm (20.7%), respectively, at full rotation. Genetic improvement in the species has been slower than anticipated due to delayed and infrequent flowering and seed production. Three genetic gain trials were established, firstly, to quantify the gains that have been made in the first generation of improvement in the breeding programme; and secondly, to establish whether a number of seed source and orchard variables influence the performance of the progeny. These variables were: the number of flowering trees in the seed orchard, year of seed collection, seed orchard origin and composition of seed orchard seed bulks. Diameter at breast height and tree height were measured in the trials at between 87 and 97 months after establishment, and timber volumes and survival were calculated. Improved seed orchard bulks performed significantly better (p < 0.01) than unimproved controls in the field trials, and genetic gains ranging from 23.2 to 164.8 m3ha-1 were observed over the unimproved commercial seed. There were significant differences (p < 0.01) in progeny growth between the levels of flowering, with higher levels of flowering (R 40 %) producing substantially greater progeny growth than lower flowering levels (S 20 %). The seed orchard origin had no effect on progeny growth in this trial series. This suggests that seed collected from any of the four seed orchards tested will produce trees with significant improvement in growth. Various scenarios investigating a range of assumptions were developed and used to predict genetic gain in the F2 populations. These were compared with realised gains achieved in the genetic gain trials. The family nested within provenance scenarios proved to be closer to realised gain than the family across provenance predictions. Two scenarios were used for family nested within provenance: Firstly, actual flowering for family nested within provenance; and secondly, estimated flowering after a 30% roguing of poor families. For both scenarios, a coefficient of relationship of 0.33 predicted gains closest to the realised gains. Indications were that the effects were additive, and that very little or no heterosis had occurred. The statistical information suggested that outcrossing in the seed orchards was > 80%. This study provides an objective and quantitative assessment of the underlying assumptions used for estimating genetic parameters, and predicting gain in this population of Eucalyptus nitens. At the same time that genetic gain trials were established, F2 trials were planted, using seedlots collected from F1 seed orchards. Analysis of the two F2 trials showed that realised gains for diameter at breast height at 87 months were close to the predicted values and ranged from 1.02 cm to 1.90 cm. Two exceptions were the sites at Helvetia and Babanango, where gains were under- and over-predicted, respectively. Realised heritability estimates, which are related directly to the realised gain and the actual selection intensities used in the seed orchards, reflected this trend. Estimation of breeding values allowed for selection of elite individuals in top families. Both grand-maternal provenance origin and F1 maternal effects were significant in the F2 trials. A Type B genetic correlation of 0.61 for diameter at 87 months indicated the possible presence of genotype by environment interactions for the two F2 sites. A low narrow sense heritability estimate of 0.06 for diameter at breast height at 87 months at one F2 site indicated that more emphasis should be placed on family information rather than individual information at this site. A heritability estimate of 0.17 for diameter at breast height at 87 months at the second site, however, indicated that further improvement is possible in this population of Eucalyptus nitens. Modelling of predicted genetic gain using various breeding strategy scenarios can be a useful tool in assisting with the decision on which strategy or management plan will deliver the most genetic gains per unit time. Such modelling, using the parameters established in the first part of the study, played an important role in developing the advanced generation breeding strategy for Eucalyptus nitens. In addition, the modelling exercise highlighted various management options which could be used to increase gains in the existing production populations or orchards. Indications are that additional roguing of 1) existing Clonal Seed Orchards based on results of F2 trials (i.e., backward selection); and 2) F1 Breeding Seed Orchards based on stricter provenance selection, will markedly increase the quality of the seed produced from these orchards within one season. This study also highlighted the importance of shortening the breeding cycle in Eucalyptus nitens, particularly in view of the delays caused by reticent flowering and seed production in the species. The information and understanding gathered from this study led to the development of a proposal for an advanced generation breeding strategy in Eucalyptus nitens. This proposal uses parental reconstruction of open-pollinated progeny to secure pedigree information of forward selections, thus combining the benefits of increased genetic gain with a shortened breeding cycle. Recommendations on the management and adaption of current production populations to increase gains have been made, because establishment and management of improved material in seed orchards to ensure a sustainable supply of improved seed to the South African forestry industry, is a key objective of the ICFR Eucalyptus nitens breeding programme. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

Adventitious rooting in stem cuttings of Eucalyptus grandis Hill ex Maid. was thought to be influenced by a putative inhibitor. In previous studies it has been usual to infer the presence of putative rooting inhibitors and promoters from the mung bean bioassay, but the possibility was raised that treatment responses in this assay could be mediated more by the concentration of the treatment solution than by the chemical identity of the solute. This appeared to be so: several solutes, including hydrochloric acid and common salt, were found to promote the rooting of mung bean cuttings when present in the treatment solution at an apparently injurous concentration. The concept of promoters and inhibitors of adventitious rooting, as constituted at present, was considered to be an unfavourable approach for further studies. Stem cuttings must contain a morphogen, broadly defined, which operates the 'switch' from stem to adventitious root. The leaves and buds of E.grandis stem cuttings did not appear to be sole sources of a morphogen (as is often assumed), but nevertheless the activity of the leaves and buds was good for rooting. This activity was reflected in the pattern of root emergence. A slight preponderance emerged from the leaf trace sectors of the stem, suggesting that the leaves and buds cause a morphogen (of unknown origin) to circulate in the cutting. The existence of a vascular morphogen was confirmed and it proved to be very mobile in the stem, suggesting that it is well distributed circumferentially at the base of the cutting rather than confined to the leaf trace sectors. It appeared to be super-abundant at the base of easy-to-root cuttings, but it was not possible to tell to what extent the morphogen was rendered accessible to the sites where roots initiate. In general, the rate of efflux from the transporting tissues, the rate of attenuation of the morphogen after efflux, and the number of potential sites for root initiation must interact on a small scale to determine rooting ability. The relative prominence of these groups of factors would be expected to vary with circumstances, for example at different locations within a single stem cutting, so the traditional concept of a limiting morphogen ('rhizocaline') is unhelpful in its simplest form. Nevertheless, the rhizocaline concept provides a starting point towards a more comprehensive view of adventitious rooting, which is required in order to predict and improve rooting ability. This view remains a remote objective because many of the factors which could be important have recieved very little attention and will be difficult to elucidate. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1988.

Photocopy of typescript. / Thesis (Ph. D.)--University of Hawaii at Manoa, 1978. / Bibliography: leaves [174]-183. / Microfiche. / xviii, 183 leaves ill. (some col.)

Typescript. / Bibliography: leaves 80-90. / viii, 90 l illus

Scleroderma, a genus of ectomycorrhizal (ECM) fungi, is often associated with trees in disturbed habitats and is therefore considered to be suitable for use in plantation forestry. This study investigated aspects of Scleroderma and its mycorrhizas with the view to its future use in plantation forestry in south China. Spores were chosen as inoculum as they are preferred by nursery managers in south China, due to the lack of on-site fermentation and storage facilities. To determine the need for inoculation, Eucalyptus plantations in south China were sampled for sporocarps and mycorrhizas over two years. This study revealed a low diversity of ECM fungi consisting of 15 taxa fruiting beneath Eucalyptus plantations. The most common genera were Scleroderma and Pisolithus, but they were infrequent and the extent of root colonization was poor. Bioassay trials with E. urophylla as a bait host, using soils collected from 8 eucalypt plantations, confirmed low levels of inoculum in field soil. It was concluded that introduction of suitable ECM symbionts into eucalypt nurseries in south China is desirable in the future. As the Scleroderma genus has not been well studied in Australasia or SE Asia, over 140 collections gathered mainly from eucalypt plantations in south China and south-western Australia were described using sporocarp and spore morphology. Twelve Scleroderma taxa were recognized from collections made from under eucalypt plantations in south-western Australia and 6 of these were collected from under eucalypt plantations in south China. In conjunction with classical taxonomy, 30 collections, including those used in inoculation trials, were further characterized by phylogenetic analyses of ITS or LSU rDNA sequences. These studies supported classical delineation of some Scleroderma species but not all. Although a limited number of collections were amplified, phylogenetic results showed that most collections in this study were distinct from the European and Malaysian taxa extracted from GenBank (89% bootstrap support for both LSU and ITS regions). In order to optimise spore germination and root colonization, two glasshouse trials were established to examine suitable spore density and spore storage conditions on E. globulus and E. urophylla. A spore density of 105 spores seedling-1 was identified as a suitable dose for promoting root colonization. Spores stored for 5 years at low temperate (4 0C) were almost as effective as freshly collected spores in forming mycorrhizas. As the compatibility of Scleroderma fungi with plantation trees is unknown, a glasshouse experiment examined the ability of 15 collections of Scleroderma to form mycorrhizas with seedlings of six plantation trees (Acacia mangium, A. mearnsii, E. globulus, E. urophylla, Pinus elliottii and P. radiata) in a nursery potting mix. Most collections were able to aggressively colonize eucalypts and pines, while roots of acacias were poorly colonized. As the Australian collections were more effective in colonizing short roots on eucalypts than the Chinese collections, it was concluded Scleroderma should be sourced from outside China for inoculating eucalypts in Chinese nurseries. To optimize nursery practices to meet the demand for high quality seedlings and clonal lines of E. urophylla and hybrids, for outplanting in south China, effects of rooting medium and inoculation with 6 Scleroderma collections on the growth of E. urophylla were examined in a nursery in south China. Four types of soil taken from eucalypt plantations in south China were compared to a potting mix composed of vermiculite, peat and sand. The inoculant Scleroderma fungi were able to out-compete indigenous mycorrhizal fungi in the rooting media. However, the potting mix was superior to soils both for plant growth and ECM development under nursery conditions. This research should facilitate the use of Scleroderma spores in eucalypt nurseries in south China. Spore orchards could be set up in China using Australian Scleroderma spp. from under eucalypts. Spores could be stored dry at 4 0C until they are required for inoculation in potting mixes in containerized nurseries. However, before commercial application, further work on persistence of Scleroderma in the nursery and field, and responses of trees in the field to inoculation, needs to be undertaken.

The impact of a canker disease of Corymbia calophylla (marri) in the southwest of Western Australia (WA) has increased substantially since it was first observed causing decline and death of this species in the 1970s. By the early 1990s there were expressions of concern and calls to determine the cause and management options. Despite this, there has been very little research into the incidence, severity and possible causes of the disease. There are, however, historical reports dating back to the 1920s of a canker disease of amenity planted C. ficifolia caused by Sporotrichum destructor, though the diagnosis and Latin description were never published. It has been suggested that there may be links between this species and the genus Quambalaria, a group containing leaf and shoot pathogens of species of Eucalyptus and Corymbia. This study examined the incidence and symptomology of the disease, the range of fungal species associated with healthy and diseased C. calophylla, and the pathogenicity of isolates obtained from these surveys. Also investigated was the identity of the pathogen, S. destructor, historically attributed to canker disease of C. ficifolia, to determine whether this pathogen is responsible for the current epidemic of C. calophylla canker and if it is synonymous with Quambalaria. Cankers were present on trees across the range of surveyed sites, with lesions occurring on trunks, branches or twigs of 25.7 % of the C. calophylla surveyed. Canker incidence was significantly greater on trees present at remnant sites, such as roadsides and in paddocks, than forest trees being 38 % and 13.3 %, respectively. Tree height, trunk diameter at breast height and crown position, size and health ratings were significant predictors of canker presence, with cankers more common on larger, older trees and trees with poor crown condition. Bark cracks exuding kino were present on 48 % of the surveyed trees, and when dissected, lesions were observed on 40 %, suggesting that these cracks could be the initial stages of canker disease. This was confirmed by the observation of a number of cracks that developed into perennial cankers during the three year study. Monitoring of canker development and the examination of transverse sections showed the circumvention of host defenses by the pathogen and the subsequential walling off response of the host (which typifies perennial cankers) was not necessarily an annual event, with no change observed in some cankers over the three year period, while others progressed rapidly in that time, occasionally to the point of girdling and killing the host. Initial surveys isolated 44 fungal species from healthy and diseased C. calophylla, with opportunistic pathogens including Endothiella eucalypti and Cytospora eucalypticola common. Subsequent surveys foccussed more on a potential pathogen in the genus Quambalaria, which was rarely isolated from active lesions, presumably because of its slow growth rate, but which sporulated consistently on the surface of older sections of the cankers. DNA sequences confirmed that Q. cyanescens and Q. pitereka are present in southwest WA, with the latter associated with leaf and shoot disease. A third and new species of Quambalaria was isolated from cankers. Comparisons of disease symptoms and conidiogenesis indicate this species is synonymous with S. destructor. The species is formally described here as Q. coyrecup T. Paap sp. nov. A pathogenicity trial was unsuccessful in causing disease symptoms in trees inoculated with core plugs taken from canker lesion margins of diseased trees, though the time frame and environmental factors may not have been adequate for disease development. The core plug inoculation method may also have failed because opportunistic pathogens which were frequently isolated from lesions out-competed Q. coyrecup (paralleling the results achieved by culturing from lesions). Quambalaria coyrecup caused symptoms matching those observed in natural infections when suitable hosts were inoculated, confirming it is the fungus responsible for the current canker disease of C. calophylla and C. ficifolia. Endothiella eucalypti also caused significant lesions, though these were not typical of natural infections, which together with its frequent isolation from both healthy and diseased trees suggests it is an opportunistic pathogen, potentially contributing to disease development in trees already infected with Q. coyrecup. Isolates of Q. pitereka from WA and eastern Australia both caused typical shoot blight symptoms in the WA hosts C. calophylla and C. ficifolia, and the eastern Australian host C. maculata, though a larger path trial is required to examine the possibility of host specificity. Quambalaria cyanescens was non-pathogenic in all inoculation trials. The current cause of cankers in C. calophylla is now known to be the same as the fungus historically implicated in the canker disease of C. ficifolia, when at the time it was described as an endophyte doing little or no damage in C. calophylla. Thus, it is of immediate importance to determine the factors driving this decline, and develop control and management options.

Phytophthora cinnamomi is an introduced soilborne phytopathogen to Western Australia (WA) and impacts on 2000 of the approximately 9000 plant species indigenous in the southwest of WA. Amongst these is Eucalyptus marginata (jarrah), the dominant and economically important hardwood timber species of the jarrah forest. This thesis aimed to investigate the morphological, pathogenic and genotypic variation in two local WA populations of P. cinnamomi isolates. The populations were selected from areas where jarrah clonal lines selected for resistance to P. cinnamomi may be used in the rehabilitation of infested jarrah forest and rehabilitated bauxite minesites in the southwest of WA. Resistance against a range of isolates using different inoculation methods. Seventy-three isolates of P. cinnamomi were collected from diseased jarrah and Corymbia calophylla (marri) trees from two populations located 70 km apart and these were examined for phenotypic and genotypic variation. Microsatellite DNA analysis showed that all isolates were of the same clonal lineage. In P. cinnamomi for the first time I show that there is a broad and continuous variation in the morphology and pathology between two populations of one clonal lineage, and that all phenotypes varied independently from one another. No relationship was found between morphological and pathogenic characters. The ability of isolates in both populations to cause deaths ranged from killing all plants within 59 days to plants being symptomless 182 days after inoculation. Single and multiple paragynous antheridia formed along with amphigynous ones in mating studies with all WA isolates and a sample of worldwide isolates. Developmental studies and cytological examination showed fertilisation tubes developed asynchronously or synchronously from both antheridial types and indicated that either antheridial type contributed a nucleus for fertilisation of the oosphere. This is the first report of paragynous antheridial associations in P. cinnamomi. Antheridial variation is a characteristic that needs to be adjusted in the taxonomic Phytophthora identification keys. In underbark and zoospore stem inoculations of three 1.5-year-old jarrah clonal lines (two ranked as resistant (RR) and one as susceptible (SS) to P. cinnamomi in the original selection trials) at 15, 20, 25 and 30°C, it was found that the method of inoculation did not produce comparable results, particularly at 25 and 30°C. At these temperatures, all three clonal lines had 100% mortality when inoculated underbark, but when inoculated with zoospores, one RR line had 60% survival and the SS and remaining RR line had 100% mortality. Generally, the level of resistance of all clonal lines declined with increasing temperature. Lesion development was measured at 20, 25 and 30°C for 4 days in detached branches of an RR and SS clonal line inoculated underbark with four different P. cinnamomi isolates. Detached branches were found to be a potential screen for jarrah resistance to P. cinnamomi and to allow the identification of susceptible and resistant clonal lines at 30°C. Lesion and colonisation development of P. cinnamomi isolates were assessed in situ (late autumn) of seed-grown and clonal lines of 3.5 to 4.5 year-old jarrah trees growing in a rehabilitated minesite jarrah forest in underbark inoculation of lateral branches (1995) or simultaneously in lateral branches and lateral roots (1996). Trees were underbark inoculated in lateral branches and lateral roots. Colonisation was more consistent as a measure of resistance than lesion length over the two trials because it accounted for the recovery of P. cinnamomi from macroscopically symptomless tissue beyond lesions, which on some occasions, was up to 6 cm. In the two trials, one RR clonal line consistently had small lesion and colonisation lengths in branches and roots. In contrast, the remaining two RR clonal lines had similar lesion and colonisation lengths to the SS clonal line and may, therefore, not be suitable for use in the rehabilitation of P. cinnamomi infested areas. The relative rankings of the jarrah clonal lines by colonisation lengths were similar between branch and root inoculations. Branch inoculations are a valid option for testing resistance and susceptibility of young jarrah trees to P. cinnamomi. The pathogen was recovered on Phytophthora selective agar 3–6 months after inoculation from 50% of samples with lesions and 30% of symptomless samples in a series of growth cabinet, glasshouse and field experiments. However, up to 11% of samples with and without lesions and from which P. cinnamomi was not initially isolated contained viable pathogen after leaching the plant material in water over 9 days. This indicates that the pathogen could be present as dormant structures, such as chlamydospores, where dormancy needs to be broken for germination to occur, or fungistatic compounds in the tissue need to be removed to allow the pathogen to grow, or both. These results have important implications for disease diagnosis and management, disease-free certification and quarantine clearance. No clonal line of jarrah was found to be 100% resistant using different inoculation methods, environmental conditions and when challenged by individuals from a large range of P. cinnamomi isolates. Even the most promising RR line had individual replicates that were unable to contain lesions or died with time. This suggests that further screening work may be required using more isolates varying in their capacity to cause disease and a broader range of environmental conditions. Jarrah clonal lines that survive such rigorous screening could then be expected to survive planting out in a range of environments in the jarrah forest and rehabilitated bauxite minesites.

Thesis (Ph. D.)--University of Melbourne, 1995. / Typescript. Includes bibliographical references (leaves [279]-287). Also available in electronic version via the World Wide.

Thesis (Ph.D.) -- University of Adelaide, Dept. of Horticulture, Viticulture and Oenology, 2000. / Bibliography: leaves 280-300.

Thesis (Ph.D.)--University of Tasmania, 2004. / Includes bibliographical references.