In the Pacific Northwest (PNW), concern about the impacts of climate and land cover change on water resources, flood-generating processes, and ecosystem dynamics emphasize the need for a mechanistic understanding of the interactions between forest canopies and hydrological processes. A detailed measurement and modeling program during the 1999 and 2000 hydrologic years characterized hydrological conditions and processes in a 500-600 year old Douglas fir-western hemlock seasonal temperate rainforest. The measurement program included sub-canopy arrays of radiometers, tipping bucket rain gauges, and soil temperature and moisture probes, to supplement a vertical temperature and humidity profile within the forest canopy. Analysis of the precipitation interception characteristics of the canopy indicated that the mean direct throughfall proportion was 0.36, and the mean saturation storage was 3.3 mm. Evaporation from small storms insufficient to saturate the canopy comprised 19% of the net interception loss, and canopy drying and evaporation during rainfall accounted for 47% and 33% of the net loss, respectively. Results of the measurement program were used to modify the Simultaneous Heat and Water (SHAW) model for forested systems. Changes to the model include improved representation of interception dynamics, stomatal conductance, and within-canopy energy transfer processes. The model effectively simulated canopy air and vapor density profiles, snowcover processes, throughfall, soil water content profiles, shallow soil temperatures, and transpiration fluxes for both a calibration period and for an uncalibrated year. Soil warming at bare locations was delayed until most of the snowcover ablated due to the large heat sink associated with the residual snow patches. During the summer, simulated evapotranspiration decreased from a maximum monthly mean of 2.17 mm day����� in July to 1.34 mm day����� in September, as a result of declining soil moisture and net radiation. Our results indicate that a relatively simple parameterization of the SHAW model for the vegetation canopy can accurately simulate seasonal hydrologic fluxes in this environment. Application and validation of the model in other forest systems will establish similarities and differences in the interactions of vegetation and hydrology, and assess the sensitivity of other systems to natural and anthropogenic perturbations. / Graduation date: 2002

This research examines the relationship between understory plant diversity and logs in a Pacific Northwest (PNW) Sitka spruce (Picea sitchensis)-western hemlock (Tsuga heterophylla) old-growth, coastal forest. These forests are renowned for their high forest productivity, frequent wind storms, and slow log decomposition rates that produce unmatched accumulations of coarse woody debris (CWD) yet few studies have examined the relationship between CWD and understory vegetation ecology. My research addressed this topic by comparing understory plant census data between paired fallen log and forest floor sites (n=20 pairs). My objectives were to: 1) determine the influence of substrate type on community composition and diversity, and 2) examine successional pathways and species assemblage patterns on CWD in various stages of decomposition. To meet these objectives I employed non-metric multidimensional scaling (NMDS) ordinations and unsupervised cluster analyses to identify and compare community assemblages on both substrates. These methods revealed similar species diversity and evenness between log and forest floor sites with compositional differences within and between substrates corresponding to habitat availability for colonization and light and moisture gradients. My results also suggest understory successional pathways related to decay class and characterized by an initial abundance of bryophytes, forbs, and seedlings followed by woody shrubs. Understory communities developing on logs also experienced increasing diversity, evenness, and divergence from forest floor communities consistent with log decomposition. These results differ from findings for boreal forests that reveal increasing similarity between substrate communities with increasing decay class. Recommendations for future research include the employment of a more robust sample size and direct measurements of environmental variables. Additional comparator studies are also needed to confirm the effects of forest type and decomposition on the relationship between CWD and forest understory communities. This study demonstrates how fine-scale wind disturbance fosters biodiversity through the creation of CWD substrate. My results and future research are essential for the development of silvicultural models designed to promote biodiversity in PNW coastal forests.

The capercaillie is a rare species of forest bird which is once again facing extinction in Britain. Working pine forests are thought to represent the future for capercaillie in Scotland. However, few studies have focused on capercaillie within working forests and as a result current management recommendations are based on studies conducted within semi-natural pinewoods. Therefore study of the ecology of capercaillie within working forests is vital for the survival of the species in Scotland. The present study investigated the ecology of capercaillie, based on indirect measures of capercaillie use, within Morangie Forest, a pine plantation managed by the Forestry Commission. Monthly dropping counts were collected over a 30 month period to gain insight into the capercaillie population at Morangie Forest, and to explore the use of faecal counts as a non-invasive monitoring tool. Habitat analysis, dietary analysis of droppings and genetic analysis of feathers were further conducted to fully explore ecology of capercaillie within Morangie Forest. Results showed that the capercaillie population in Morangie Forest was subject to seasonal movements and that movements were not confined to the bounds of the forest. Substantial mixing occurred with capercaillie from neighbouring Novar Forest. In addition, capercaillie within Morangie Forest selected habitat at a radius of 50m and beyond. The population of capercaillie at Morangie Forest was estimated at around 65 individuals based on measures from dropping counts and genetic determination of individuals from feathers. Results also suggested that winter dropping counts could represent a useful tool for forest managers to monitor the size and movement of capercaillie populations frequenting their forests. In addition winter dropping counts could be used in conjunction with habitat data to plan management of habitat for capercaillie. The present study contributes towards future management strategies for the conservation of capercaillie within working forests and suggests further research priorities for capercaillie in Scotland, particularly those focused at a landscape scale.

Forest elephant (Loxodonta africana cyclotis) sociality is relatively little-studied due to the difficulties of making direct observations in rainforests. In Central Africa elephants aggregate at large natural forest clearings known as bais, which have been postulated to offer social benefits in addition to nutritional resources. This thesis explores the role of these clearings as social arenas by examining bai use within three main themes; ecology, sociality and risk factors. Seasonal changes in elephant use of the Maya Nord bai (Republic of Congo) are described, along with the demography of the visiting population. Elephant visit rate was highly variable; the number of elephants using Maya Nord in an observation day ranged from 0 to 117 animals. This variability was unrelated to local resource availability and productivity suggesting that bai use occurs year round. Elephants in Odzala-Kokoua do not show high fidelity to a single clearing; 454 elephants were individually identified and re-sighted an average of 1.76 times (range 1-10) during the twelve month study period. Previous bai studies have yet to quantify how elephants associate with one another within the bai area. This study examines socio-spatial organisation and associate choice using two measures of association within the 0.23 km2 bai area; aggregations (all elephants present in the clearing) and parties (elephants spatially co-ordinated in activity and movement) and distinguishes these from parties that range together (i.e. arrive and leave together). Social network analyses (SocProg) were used to describe inter- and intra-sexual multi-level organisation in the bai environment, and to illustrate the non-random nature of elephant aggregations and parties. Bais were shown to function as social arenas; female elephants showed active choice of certain associates and active avoidance of others when creating parties, whereas males were less discriminatory. Parties formed in the clearing (mean size= 3.93, SE= 0.186) were larger than ranging parties (mean size= 2.71, SE= 0.084) and elephants stayed for 50% longer in the clearing when they associated with individuals from outside their ranging party. Inter- and intra-sexual relationships were maintained within the clearing, and these are suggested to offer elephants essential opportunities for social learning. The patterning and nature of the relationships observed at the Maya Nord clearing indicates that forest elephants use a fission-fusion social structure similar to that of savannah elephants (Loxodonta africana africana); relationships are significantly structured by age- and sex- and underpinned by individual identity. Old experienced females hold key roles for forest elephants, and male relationships are superimposed on the network of female associations. Odzala-Kokoua elephants use bais to maintain their social relationships despite being highly sensitive to the anthropogenic risks involved in using these open areas. The results of this study suggest that forest and savannah elephants lie on the same social continuum, balancing social “pulls” to aggregate against the ecological “pushes” that force groups to fission. Previous models of savannah elephant sociality construct levels of association and social complexity upwards from the basic mother-calf unit (e.g. Wittemyer & Getz 2007). My results suggest that it may be more appropriate to consider elephant sociality and associations as in dynamic equilibrium between social and ecological influences acting at all levels of grouping, and to explicitly test how these underlie the opportunity costs that elephants are willing to pay in order to maintain social groupings.

Cord-forming fungi (CFF) are an assemblage of saprotrophic fungi which can use complex foraging organs of longitudinally arranged hyphae to join up disparate substrates in a patchy resource environment. Their importance to woodlands lies, mainly, in their ability to modify nutrient cycling and soil structure. Therefore, in order to enable woodlands to continue to thrive in terms of their health and ecosystem function, it is necessary to understand the factors contributing to the establishment, success and diversity of this group. Whilst work to date on CFF has focussed on their physiology and interactions in laboratory conditions, little work has been carried out on their taxonomy and establishment/presence in the field. The work in this thesis begins to address these crucial unanswered questions in CFF ecology. By carrying out investigations at a range of scales, from phylogenetic analysis to UK wide Species Distribution Modelling, this thesis reaches a number of surprising results with potentially important implications for woodland management. This is most evident in Chapter 3 where our hypothesis that fungal communities develop over time in plantations of different woodland ages was disproved, illustrating that even 13 years after planting, fungal communities in plantations on ex-agricultural land had not begun to reach those in established ASNW. These unexpected results continue into Chapter 4, where the thesis demonstrates that dominant canopy species has a greater impact on community composition than any other woodland factor. Chapter 5 continues this theme, by showing that removal of invasive species is not always beneficial for the cord-forming fungal communities, especially if it involves removing the woody substrate. The work described, detailed and analysed in this thesis has initiated further investigations, proposed changes to woodland management practices and laid the foundations for future work relating to CFF and their role and function in British woodlands.

One of the main elements of dendrochronological standardization is removing the biological trend, i.e. the progressive decline of ring width along a cross-sectional radius that is caused by the corresponding increase in stem size and tree age over time. The ‘‘conservative’’ option for removing this biological trend is to fit a modified negative exponential curve (or a straight line with slope ≤ 0) to the ring-width measurements. This method is based on the assumption that, especially for open-grown and/or shade-intolerant species, annual growth rate of mature trees fluctuates around a specific level, expressed by a constant ring width. Because this method has numerical and conceptual drawbacks, we propose an alternative approach based on the assumption that constant growth is expressed by a constant basal area increment distributed over a growing surface. From this starting point, we derive a mathematical expression for the biological trend of ring width, which can be easily calculated and used for dendrochronological standardization. The proposed C-method is compared to other standardization techniques, including Regional Curve Standardization (RCS), of tree-ring width from ponderosa pines (Pinus ponderosa Douglas ex P.Lawson & C.Lawson) located at the Gus Pearson Natural Area (GPNA) in northern Arizona, USA. Master ring-index chronologies built from ring area, RCS, and C-method reproduced stand-wide patterns of tree growth at the GPNA, whereas other standardization options, including the ‘‘conservative’’ one, failed to do so. In addition, the C-method has the advantage of calculating an expected growth curve for each tree, whereas RCS is based on applying the same growth curve to all trees. In conclusion, the C-method replaces the purely empirical ‘‘conservative’’ option with a theory based approach, which is applicable to individual ring-width measurement series, does not require fitting a growth curve using nonlinear regression, and can be rigorously tested for improving tree-ring records of environmental changes.

Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Faculty of Science University of Witwatersrand Johannesburg SOUTH AFRICA / A three-year study was undertaken In the province of Mpumalanga, South Africa to Investigate the competitive effects of the grass Setaria megaphylla on the growth of the tree species Pinus patula. A replacement series field trial, where six different competition regimes were Implemented, clearly demonstrated the suppressive effects of S. ( Abbreviation abstract ) / AC2017

A thesis submitted in the Faculty of Science, University of Witwatersrand, Johannesburg for the degree of Doctor of Philosophy. Johannesburg, 1996. / Litter accumulates on the forest floor in Pinus patula plantations in Mpumalanga, South Africa and as a result nutrients become immobilized and site productivity is reduced. Studies have correlated litteraccumulation with abiotic factors, such as high altitude sites, high rainfall soils derived from the timeball series (shale) have thick litter layers. This study focuses on the biotic factors involved in litter accumulation. [Abbreviated Abstract. Open document to view full version] / GR 2017

Em muitos estudos ecológicos a distribuição dos organismos vivos era considerada aleatória, uniforme ou orientada ao longo de um simples gradiente. Ao contrário disso, sabe-se que eles podem se apresentar agregados em manchas, em forma de gradientes ou em outros tipos de estruturas espaciais. Dessa forma, a descrição e incorporação da estrutura espacial para a compreensão dos fenômenos ecológicos tem se tornado cada vez mais necessária. Neste trabalho, foram discutidos aspectos relacionados à amostragem e à modelagem da estrutura de continuidade espacial, por meio da geoestatística baseada em modelo, em quatro formações florestais do Estado de São Paulo. Nas quatro formações florestais foram instaladas parcelas permanentes de 320 × 320 m e todos os indivíduos arbóreos no interior das parcelas com diâmetro maior ou igual a 5 cm foram mapeados, georreferenciados, medidos e identificados. Os modelos geoestatísticos ajustados mostraram que a percepção da estrutura de dependência espacial foi influenciada pelo tamanho e pela forma da unidade amostral. As parcelas quadradas de 20×20 m foram as que melhor descreveram a estrutura de continuidade espacial e as parcelas retangulares captaram a variabilidade da floresta. As quatro formações florestais avaliadas apresentaram estruturas espacias distintas, sendo que a Savana e Ombrófila apresentam estruturas espaciais mais pronunciadas do que as formações Estacional e Restinga. Por fim, ao comparar as estimativas geradas pela abordagem baseada em delineamento (teoria da amostragem clássica) e a abordagem baseada em modelo (geoestatística) por estudos de simulação, verificou-se que mesmo com dependência espacial os estimadores clássicos fornecem estimativas e intervalos de confiança igualmente válidos. / In many ecological studies the distribution of living organisms was considered random, uniform or oriented along a single gradient. Unlike this, it is known that they can present aggregated in patches, in the form of gradients or other types of spatial structures. Thus, the description and the incorporation of spatial structure for understanding of ecological phenomena is becoming increasingly necessary. In this work were discussed aspects related to sampling and modeling the structure of spatial continuity through model-based geostatistics on four forest formations of Sao Paulo State. In the four forest formations were installed permanent plots of 320 × 320 m. All individual trees within the plots with a diameter greater than or equal to 5 cm were mapped, georeferenced, measured and identified. The adjusted geostatistical models showed that the perception of spatial structure of dependence was influenced by the size and shape of sampling unit. The structure of spatial continuity was best described by square plots of 20 × 20 m. The rectangular plots capture the variability of the forest. The four forest formations evaluated showed distinct spatial structures. The Savanna and Dense Rain formations have spatial structures more pronounced than the Seasonal Semideciduos and Restinga formations. Finally, to compare the estimates generated by the design-based approach (classical sampling theory) and model-based approach (geostatistics) for simulation studies, was found that even with the spatial dependence, the classical estimators provide estimates and confidence intervals equally valid.

The Brazilian pepper tree (BP, Schinus terebinthifolius), introduced to the United States in the 1800s, has since become a category one invasive plant in Florida, aggressively spreading to 3000 km2 of prime habitat. There is a serious dearth of knowledge on whether the rhizobiome plays any roles in the displacement of native flora and the range expansion of BP. This thesis discusses the well-established plant invasion mechanisms of the BP and highlights key emerging mechanisms and gaps in (a) the current understanding of the molecular, below-ground processes of BP invasion and (b) studies on the potential role of microbial interactions in the success of BP invasion already established for other select invasive species, and the intervention of soil metagenomic studies to elucidate plant invasive mechanisms. These poorly studied mechanisms could further explain the aggressive spread and resilience of BP and contribute significantly to the development of effective and sustainable control measures, enabling appropriate strategies for restoring native plants. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection