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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Cooperative behavior of motor proteins

Beeg, Janina January 2007 (has links)
The cytoskeletal motor protein kinesin-1 (conventional kinesin) is the fast carrier for intracellular cargo transport along microtubules. So far most studies aimed at investigating the transport properties of individual motor molecules. However, the transport in cells usually involves the collective work of more than one motor. In the present work, we have studied the movement of beads as artificial loads/organelles pulled by several kinesin-1 motors in vitro. For a wide range of motor coverage of the beads and different bead (cargo) sizes the transport parameters walking distance or run length, velocity and force generation are measured. The results indicate that the transport parameters are influenced by the number of motors carrying the bead. While the transport velocity slightly decreases, an increase in the run length was measured and higher forces are determined, when more motors are involved. The effective number of motors pulling a bead is estimated by measuring the change in the hydrodynamic diameter of kinesin-coated beads using dynamic light scattering. The geometrical constraints imposed by the transport system have been taken into account. Thus, results for beads of different size and motor-surface coverage could be compared. In addition, run length-distributions obtained for the smallest bead size were matched to theoretically calculated distributions. The latter yielded an average number of pulling motors, which is in agreement with the effective motor numbers determined experimentally. / Kinesin-1 (konventionelles Kinesin) ist ein Motorprotein des Zytoskeletts, das für den schnellen intrazellulären Lastentransport auf Mikrotubuli verantwortlich ist. Das Hauptinteresse vieler Studien lag bisher auf der Erforschung der Transporteigenschaften von Einzelmotormolekülen. Der Transport in der Zelle erfordert aber gewöhnlich kollektive Arbeit von mehreren Motoren. In dieser Arbeit wurde die Bewegung von Kugeln als Modell für Zellorganellen, die von Kinesin-1 Molekülen gezogen werden, in Anhängigkeit von der Motorendichte auf der Kugeloberfläche und unterschiedlichen Kugeldurchmessern in vitro untersuchten. Die Transportparameter Weglänge, Geschwindigkeit und die erzeugte Kraft wurden gemessen. Die Ergebnisse zeigen, dass die Transportgeschwindigkeit leicht abnimmt, wohingegen die Weglänge und die erzeugten Kräfte mit steigender Molekülkonzentration zunehmen. Die tatsächliche Anzahl der Motoren, die aktiv am Transport der Kugeln beteiligt sind, wurde bestimmt, indem die Änderung des hydrodynamischen Durchmessers der mit Kinesin bedeckten Kugeln mittels dynamischer Lichtstreuung gemessen wurde. Außerdem wurden sterische Effekte des verwendeten Transportsystems in die Berechnung einbezogen. Damit werden Ergebnisse vergleichbar, die für unterschiedliche Kugeldurchmesser und Motorkonzentrationen ermittelt wurden. Zusätzlich wurden die Verteilungen der Weglängen für die kleinste Kugelgröße mit theoretisch ermittelten Verteilungen verglichen. Letzteres ergab durchschnittliche Anzahlen der aktiv am Transport beteiligten Motormoleküle, die mit den experimentell bestimmten Ergebnissen übereinstimmen.
2

Regulating Valvular Interstitial Cell Phenotype by Boundary Stiffness

Kural, Mehmet Hamdi 01 June 2014 (has links)
"A quantitative understanding of the complex interactions between cells, soluble factors, and the biological and mechanical properties of biomaterials is required to guide cell remodeling towards regeneration of healthy tissue rather than fibrocontractive tissue. The goal of this thesis was to elucidate the interactions between the boundary stiffness of three-dimensional (3D) matrix and soluble factors on valvular interstitial cell (VIC) phenotype with a quantitative approach. The first part of the work presented in this thesis was to characterize the combined effects of boundary stiffness and transforming growth factor-β1 (TGF-β1) on cell-generated forces and collagen accumulation. We first generated a quantitative map of cell-generated tension in response to these factors by culturing VICs within micro-scale fibrin gels between compliant posts (0.15-1.05 nN/nm) in chemically-defined media with TGF-β1 (0-5 ng/mL). The VICs generated 100 to 3000 nN/cell after one week of culture, and multiple regression modeling demonstrated, for the first time, quantitative interaction (synergy) between these factors in a 3D culture system. We then isolated passive and active components of tension within the micro-tissues and found that cells cultured with high levels of stiffness and TGF-β1 expressed myofibroblast markers and generated substantial residual tension in the matrix yet, surprisingly, were not able to generate additional tension in response to membrane depolarization signifying a state of continual maximal contraction. In contrast, negligible residual tension was stored in the low stiffness and TGF-β1 groups indicating a lower potential for shrinkage upon release. We then studied if ECM could be generated under the low tension environment and found that TGF-β1, but not EGF, increased de novo collagen accumulation in both low and high tension environments roughly equally. Combined, these findings suggest that isometric cell force, passive retraction, and collagen production can be tuned by independently altering boundary stiffness and TGF-β1 concentration. In the second part, by using the quantitative information obtained from the first part, we investigated the effects of dynamic changes in stiffness on cell phenotype in a 3D protein matrix, quantitatively. Our novel method utilizing magnetic force to constrain the motion of one of two flexible posts between which VIC-populated micro-tissues were cultured effectively doubled the boundary stiffness and resulted in a significant increase in cell-generated forces. When the magnetic force was removed, the effective boundary stiffness was halved and the tissue tension dropped to 65-87% of the peak value. Surprisingly, following release the cell-generated forces continued to increase for the next two days rather than reducing down to the homeostatic tension level of the control group with identical (but constant) boundary stiffness. The rapid release of tension with the return to baseline boundary stiffness did not result in a decrease in number of cells with α-SMA positive stress fibers or an increase in apoptosis. When samples were entirely released from the boundaries and cultured free floating (where tension is minimal but cannot be measured), the proportion of apoptotic cells in middle region of the micro-tissues increased more than five-fold to 31%. Together, these data indicate that modest temporary changes in boundary stiffness can have lasting effects on myofibroblast activation and persistence in 3D matrices, and that a large decrease in the ability of the cells to generate tension is required to trigger de-differentiation and apoptosis. "

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