Membrane fusion plays a crucial role in many biological processes from virus infection to release of neurotransmitters (Hughson 1999). Membrane -bound surface glycoproteins are involved in the fusion process. The enveloped animal virus infection is initiated by interactions between the virus and the cell membrane through the surface glycoproteins called fusion glycoproteins (Eckert and Kim 2001). The fusion glycoproteins are responsible for both receptor binding and membrane fusion activity. The fusion proteins are characterized by a large ectodomain containing fusion peptides, a transmembrane (TM) domain, and a cytoplasimic domain. The viruses can enter cells either at neutral pH or at acidic pH. When exposed to appropriate conditions, the fusion protein undergoes conformational changes, which in turn drives the fusion process. The fusion glycoproteins can be classified as Class I and Class II fusion proteins (Lescar eta/. 2001 ). The Class I fusion proteins are synthesized as a precursor molecule, which then undergoes proteolytic cleavage to generate a mature molecule containing the hydrophobic fusion peptide at the N -terminal. The class II fusion glycoproteins are not synthesized as precursor molecules, and they have internal fusion peptides. The vesicular stomatitis virus (VSV) glycoprotein G is a class Ill fusion protein. It has a neutral internal fusion peptide and upon exposure to low pH, the protein undergoes reversible conformational change (Gaudin 2000, Yao eta/. 2003). A 62kDa soluble ectodomain of VSV G (Gs) has been generated by limited trypsin digestion. The SDS PAGE gel electrophoresis indicates that the trypsin has possibly cleaved near the transmembrane (TM) domain. Liposome binding experiment suggests that Gs can bind to liposomes in a pH dependent manner. Liposome fusion studied by RET assay suggests that the Gs can induce significant amount of hemifusion. However, it failed to induce any content mixing mainly due to considerable amount of membrane leakage activity. This indicates that the binding to the membrane through the TM domain is required for complete membrane fusion. Unlike TBE E soluble ectodomain, Gs can form dimers and trimers at neutral and fusion active pH. Light scattering experiment shows that the aggregation of Gs increases with a decrease in pH. The conformational change with changes in pH was evident from the trypsin sensitivity assay and CD spectroscopy. It was observed that Gs became resistant to trypsin digestion at low pH and a-helicity content of the molecule increased upon lowering the pH. However, the maximum amount of a-helicity was observed at pH 6. The removal of the TM domain also shifts the optimum fusion pH towards more acidic pH in comparison to VSV G. These results indicate that the TM domain is not required for the oligomerization of G protein, but some role has been reserved for the TM domain during membrane fusion. The CD spectroscopic data also indicated that the G protein undergoes structural rearrangement between pH 7.4-6, which could be responsible for the exposure of fusion peptide and subsequent target membrane binding. / Thesis / Master of Science (MSc)

Relatively little is known about the vesicular stomatitis virus (VSV) glycoprotein G fusion mechanism. Vesicular stomatitis virus has a single type 1 integral membrane glycoprotein G embedded in the viral membrane. It is the only viral protein required for VSV induced low pH mediated fusion. Mutations in four regions (H2, A5, A4 and HI0) of the VSV G ectodomain have been shown to abolish the fusion activity of the viral glycoprotein (Li et al.,l993). One region H2 (a.a 117-139) has been suggested to be the fusion peptide (Zhang and Ghosh, 1994)(Fredericksen and Whitt, 1995). Amino acids 59-221 of the G protein, an area that encompasses the H2 region, has recently been shown to interact with liposomes through hydrophobic photolabeling experiments (Durrer et al., 1995), suggesting that the H2 region (fusion peptide)is able to interact with hydrophobic target bilayers at low pH. A soluble VSV G protein lacking the transmembrane anchor and cytoplasmic tail of VSV G is not fusogenic, suggesting that G must be anchored to the plasma membrane to promote syncytia (Florkiewicz and Rose, 1984). To better understand the steps involved in the fusion mechanism of VSV G it is important to identify domains within the protein that are involved in the fusion process. To determine the contributions of the transmembrane anchor and cytoplasmic tail to the VSV fusion mechanism chimeric G proteins were constructed. The transmembrane anchor alone or in conjunction with the cytoplasmic tail ofVSV G was replaced with equivalent domain from other viral proteins, HSV-1 glycoproteins gB and gD, adenovirus E3 11.6 K gene, that are not involved in low-pH fusion and the cellular protein CD4. All chimeras were expressed in COS-1 cells, glycosylated, oligomerized, transported to the cdl surface, showed a low-pH induced conformational change and were expressed on the cell surface at levels equivalent to wild-type G. The transmembrane hybrids show extensive syncytia formation at levels similar to wild-type G when induced at pH 5.6. The transmembrane-cytoplasmic tail hybrids showed reduced levels of syncytia as compared to wild-type Gat both pH 5.6 and 5.2. A glycosylphosphatidylinositollipid-anchored ectodomain of G (GGPI), which lacks both the transmembrane and cytoplasmic tail ofG, was expressed in COS-1 cells. The GGPI chimera was glycosylated, expressed on the cell surface,and oligomerized similar to wild-type G. However the chimera was fusion negative, could not promote lipid mixing and h~,d an altered tryptic digestion profile. A fusion negative chimera Gt12gBwas constructed by exchanging the TM of G with the equivalent domain from HSV-1 gB TM plus eight extra amino acids of the gB ectodomain. Deletion of the 11 extra gB amino acids (GgB3G) restored the fusogenic activity of this chimera. Another chimera G 10 DAF directly demonstrated that the fusion negative phenotype of GGPI, like chimera Gtii1Lll2gB, was a result of the 10 extra amino acids at the EC-TM interface. The ectodomain (EC)-transmembrane (TM) interface is highly conserved among 5 vesiculoviruses. Chimeras with a 9 amino acid insertion (GlODAF), deletion (G~9) or replacement (G~910DAF) were expressed in COS-1 cells. The expressed proteins were glycosylated, underwent a low-pH induced conformational change and were expressed on the cell surface at levels equivalent to wild type, but were fusion negative. Suggesting that both the sequence and spatial arrangement of amino acids at the EC-TM interface may affect VSV G fusion. Taken together the data suggests that the specific amino acid sequence of the transmembrane anchor of VSV G is not essential for fusion. Replacement of the TM of VSV G with equivalent domains from other viral and cellular proteins does not affect the fusion activity. The cytoplasmic tail of VSV G may form an entity alone or in conjunction with the transmembrane anchor that can regulate fusion. Another region in the ectodomain of VSV G renders the glycoprotein fusion sensitive in a cell-cell fusion assay and was characterized at the EC-TM interface. / Thesis / Master of Science (MS)

Age stratified seroepidemiological studies play a crucial role in the design and assessment of vaccination strategies. An existing multiplex bead immunoassay for measles, mumps, rubella and varicella zoster virus antibodies together with a newly developed multiplex bead immunoassay for herpes simplex virus type 1 and type 2 antibodies were used to investigate the age-related seroepidemiology of these viruses in England during 2012.To develop the HSV-1 and HSV-2 antibody assay, attempts were made to produce full length of HSV-1 and HSV-2 glycoprotein G using a baculovirus vector expression system. While HSV-1 gG protein was produced, the proteins were extensively aggregated. Native glycoprotein G molecules undergo partial removal of HSV-1 signal sequence and HSV-1 short membrane anchor sequence during post translational modification. It is possible that such post translational modification is not performed when protein is processed in insect cell culture. Attempts to produce an HSV-2 glycoprotein G were not successful. It is possible that the high GC-content of HSV-2 glycoprotein G led to poor fidelity of copying the PCR amplification sequence. Commercially available truncated HSV-1 gG and HSV-2 gG were therefore used to develop a duplex microbead immunoassay for the simultaneous detection of specific HSV antibodies in human sera. The resultant assays performed with low sensitivity and specificity (HSV-1 of 89% and 66%, respectively and for HSV-2 of 79% and 85%, respectively) compared to the reference HerpeSelect ELISA.The MMRV multiplex bead immunoassay proved rapid, and required minimal sample volume to semi-quantify MMRV specific antibodies. The seroepidemiology of MMR results was compared with previous seroepidemiological studies performed in 1996 in England. The comparison showed an increase in the proportion of individuals who were positive for mumps and measles antibodies in the 2012 survey. The proportion of individuals positive for rubella was essentially unchanged. The increase in the proportion of individuals positive for mumps and measles antibodies in 2012 show the effectiveness of the change in MMR vaccination policy for England from 1996 onward. For VZV, the proportion of individuals who were positive for varicella antibodies between the 1996 and 2012 serological surveys were essentially unchanged. The comparison showed that most young children are susceptible to VZV. At this level of immunity, it can be expected that varicella will continue to produce epidemics of infection in the population, unless varicella vaccination is implemented as a part of routine childhood vaccination.