A study under controlled conditions of ovarian development and rematuration in the yabby (Cherax destructot) was undertaken. The purpose of the study was to improve fundamental understanding of the reproductive biology of the species and provide a basis for application to hatchery management in culture. A review was made of the current status of yabby culture in Australia and the present understanding of reproductive biology of decapod Crustacea. The review emphasised factors controlling several aspects of ovarian development, in particular the processes of vitellogenesis. The subsequent study was designed within the context of current hatchery practice and was based on existing knowledge of decapod reproduction, The sexual differentiation of the yabby after hatching was investigated by serial histological sections, and experiments were carried out to investigate the possibility of sex reversal of males. Most of this Investigation was concerned with removing the influence of the androgenic gland in directing male development, with the intent of observing the development of the elementary gonadal tissue into ovary. It was found that in contrast to other crustacean species, the sex of the yabby becomes fixed before the development of external secondary sexual characteristics, and before the androgenic gland can be discerned. Ovarian tissue developed in females at less than 8 weeks after hatching. A preliminary examination was undertaken for feminising parasites in gonadal tissue of a hermaphrodite yabby. Investigation of the ovary after spawning demonstrated that whilst the female was held under constant conditions of temperature and photoperiod, little rematuration occurred. Except for generation of previtellogenic oocytes during the first two days, the gonaciosomatic index remained low for up to 5 months after spawning. If the temperature of the female was reduced to 10°C and maintained constant, the previtellogenic oocytes were partially resorbed over a three week period. Rematuration then commenced, albeit at a low rate because of the reduced temperature, A method for standardising gonadosomatic indices was developed which took into account differences in hepatopancreatic nutrient reserves of individuals and loss of one or more appendages. This part of the study also considered constraints to rematuration and developed a method of accounting for differences in the ability of females to remature after spawning. Experiments were carried out to investigate the effect of crowding and temperature manipulation on initiating ovarian rematuration and to determine the rate of rematuration at 22°C once initiated. The duration of low temperature had no effect on rematuration; an overnight cooling was sufficient to initiate the process, Rematuration to the end of stage 2 vltellogenesis was substantially complete within 10 days. Crowding of females suppressed rematuration, but less than ideal water quality was not found to have any effect. The presence of a male initiated rematuration at a similar rate, but also led to stage 3 vitetlogenesis and spawning. A study was made of the pheromonal influence of the male through water borne factors without success. Rematuration could not be induced in ovigerous females. The literature review indicated that ovarian rematuration was under the control of an ovary stimulating hormone produced by the thoracic nerve ganglia. Attempts were therefore made to stimulate ovarian rematuration by incorporating the thoracic nerve into the diet of females. Attempts were also made to induce the release of ovary stimulating hormone from the thoracic nerve with 5-hydroxytryptamine, and also with octopamine. No effects were found, but a significant difference between the neurophysiology of the yabby and northern hemisphere crayfish was observed, and the implications of this finding are discussed. The study did not produce any conclusive evidence of an ovary stimulating hormone for the yabby. A model of ovarian rematuration which collects the findings of the experimental investigations was developed, and was used to suggest a hatchery broodstock management protocol. This model differs from existing models in that rematuration triggers and nutritional status are considered.

Thesis (M.S.)--University of North Carolina at Wilmington, 2004. / Includes bibliographical references (leaves : 53-58).

Economic viability of fish production in recirculating aquaculture system (RAS) facility depends on minimizing the energy requirements of operating such facilities. The fish growth and water quality aspects of RAS have been studied in considerable details. However, the understanding of the thermal environment of RAS lags behind. A step-wise steady-state thermal model was developed to simulate the daily heating, ventilation, water pumping, biofilter operation, and lighting energy requirements over a production cycle. The model was validated using temperature and energy data collected from RAS facility of Virginia Tech during 1992. Model simulations were performed with various production scenarios. The energy cost of fish production ($/kg) was used to evaluate different scenarios with and without heat recovery from discharged system water. Building heating required the most (40 % - 70 % of total) energy followed by water pumping, biofilter operation, lighting, and ventilation. Water replacement was the most dominant factor in determining the facility’s heating energy requirement. Heat recovery from discharged system water indicated significant drop (up to 40 %) in energy cost of fish production. / Master of Science

Thesis (M. Tech. (Agriculture)) - Central University of Technology, Free state, 2013 / The objectives of the study were to find the relationship between live performance and testis traits of South African indigenous cockerels on Naked Neck, Ovambo and Potchefstroom Koekoek (Trial 1). Characterise Naked Neck, Ovambo and Potchefstroom Koekoek cockerels’ semen macroscopically and microscopically (Trial 2). To investigate the relationship between phenotypic and sperm traits of the South African indigenous cockerels Naked Neck, Ovambo and Potchefstroom Koekoek. (Trial 3). Quantification of indigenous cockerels sperm traits measured by Computer Assisted Sperm Analysis (CASA) technology and the relationship to fertility (Trial 4). The cockerels shank, comb and wattle length were recorded with a vernier calliper. A total of 198 ejaculates were collected from 33 cockerels; Ovambo (n=11), Potchefstroom Koekoek (n=11) and Naked Neck (n=11) by means of an abdominal massage technique. Following analysis, 0.25 ml undiluted semen dose from Naked Neck (NN, 11), Ovambo (OV, 11) and Potchefstroom Koekoek (PK, 11) cockerels were inseminated NN (30), OV (30) and PK (30) hens once per week for 6 weeks. Semen was analysed macroscopically and microscopically. The sperm motility rate was evaluated with the aid of the Computer Assisted Sperm Analysis (CASA) called Sperm Class Analyser (SCA) system. Breed significantly (P< 0.05) affected the body weight of Ovambo (2.5±0.4kg), Naked Neck (2.0±0.3kg) and Potchefstroom Koekoek (2.3±0.3kg) cockerels, OV was statistically heavier than NN and PK. The semen volume of Naked Neck (0.5±0.2ml) breed was significantly higher, when compared to Ovambo (0.4±0.2ml), but similar to Potchefstroom Koekoek (0.3±0.2ml) breed. The overall sperm motility rate of Ovambo (95.0±7.2%), Potchefstroom Koekoek (86.0±13.7%) Naked Neck (76.4±22.2%) group was significantly different. The normal sperm morphology in the Naked Neck (76.4±22.2%) was significantly lower when compared to Potchefstroom Koekoek (86.0±13.7%) and Ovambo (95.0±7.2%) cockerels. A positive correlation existed between body weight and semen volume for Potchefstroom Koekoek (r=0.1477) cockerels only. Moreover, there was a positive correlation between the body weight and total sperm motility for Naked Neck (r=0.3848), Ovambo (r=0.4871) and Potchefstroom Koekoek (r=0.2230) cockerels. However, a negative correlation existed between body weight and semen volume for Naked Neck (r=-0.4502) and Ovambo (r=-0.1244). There was no significant differences (P>0.05) on the shank length (SL), comb length (CL) and wattle length WL) of Naked Neck (8.4, 5.4 and 5.6 cm), Ovambo (8.3, 5.8 and 6.0 cm) and Potchefstroom Koekoek (7.7, 5.9 and 5.6). There was a positive correlation between shank length and wattle length, comb length, semen volume, sperm concentration, semen pH and live normal sperm, inversely, a negative correlation of body weight and total sperm motility was observed. Introspective a negative correlation existed between body weight and total motility. Ovambo (11.45±0.9 g) had the highest live weight of testis, it was significantly different from Naked Neck (9.2±0.8g) and Potchefstroom Koekoek (8.9±0.8 g). For average length of the testis there was a significant difference amongst all breeds, Ovambo (4.0±0.5 cm), Naked Neck (3.4±0.3 cm) and Potchefstroom Koekoek (3.7±0.4 cm). Following Al, significant differences were recorded in Potchefstroom Koekoek and produced eggs that had highest average egg weight (55.5 g), fertility (68.2 %), hatchability (78.6 %), percentage of normal chicks (80.1%) and chick weight (37.9 g) compared to Ovambo (40.4 g, 5 2.1 % , 70.2 %, 71.5 %, 32.8 g and Naked Neck (37.1 g, 50.6 %, 71.1 %, 75.8 % and 23.5 g). In order to achieve the highest level of fertility and hatched of fertile eggs, an adequate number of active males that are producing high quality semen should be maintained in the breeder house at all times. In conclusion, body weight positively affected semen volume and sperm motility rate but this was breed dependent. The Sperm of Potchefstroom Koekoek and Ovambo resulted in a better motility and morphology rate. The Sperm Class Analyser or CASA provided more precise, repeatable and objective information. Evaluation of the sperm motility rate of South African indigenous cockerels holds potential for future use in semen evaluation. Body weight of all three indigenous breeds was positively correlated with sperm concentration, semen pH, and total sperm motility. Shank and wattle length of all three indigenous breeds were positively correlated with semen volume, sperm concentration, and semen pH but not with total sperm motility. However, comb length was positively correlated with semen volume and pH, sperm concentration, and total motility. In conclusion, there is no correlation between live performance and testis traits. Though the study suggests that body weight and testicular length are good indicators of sperm production. Simple and indirect method of estimation is still needed to predict the fertility of the breeding cockerels. In order to achieve the highest level of fertility and hatch of fertile eggs, an adequate number of active males that are producing high quality semen should be maintained in the breeder house at all times. The Potchefstroom Koekoek, Ovambo and Naked Neck donated quality semen as well as in improving the fertility and hatchability traits of the indigenous chicken breeds. Chicken hatched from larger eggs had higher body weight, hatchability and fertility therefore breeders should select bigger egg sizes probably of 50-55g for breeding programmes. Consequently, the local cockerels have higher potential for use in natural mating and Al programmes since seminal traits could be a viable index for selection of breeding cockerels.

Intensive aquaculture of Atlantic cod is fast developing in both Northern Europe and Canada. The last six years have seen major improvements in the larval rearing protocols and husbandry techniques for this species. Although breeding programmes are currently being developed by both governmental and private institutions in the main cod producing countries (i.e. Norway, Iceland and Canada), most hatcheries still rely on the mass spawning of their own broodstock. Mass spawning tanks are complex systems where fish are left to spawn naturally and fertilised eggs are collected with the overflowing water, with little or no control over the matings of the animals. Few published studies in other commercial marine species (i.e. turbot and sole) have attempted to analyse the output from such systems using microsatellite markers and several parentage analysis software programs. A review of these publications exposed a lack of consistency in the methods used to analyse such complex datasets. This problem was addressed by carrying out a detailed comparison of two analytical principals (i.e. assignment by strict exclusion and assignment by probabilities) and four parentage software programmes (i.e. FAP, VITASSIGN, CERVUS and PAPA), using the DNA profiles, at 5 loci, from 300 cod fry issued from the mass spawning of a large hatchery cod broodstock tank (consisting of 99 fish). This study revealed large discrepancies in the allocation outcomes between exclusion-based and probability-based assignments caused by the important rate of typing errors present in the dataset. Out of the four softwares tested, FAP (Taggart, 2007) was the most appropriate to use for handling such a dataset. It combined the most conservative method of assignment with the most informative output for the results displayed. In an attempt to study the breeding dynamics in a cod commercial hatchery, parental contributions to five groups of 300 fry (from five single days of spawning and from two commercial mass spawning cod tanks) were analysed, based on the genotyping data from eight loci. The parentage results from the exclusion-based analyses revealed that, on a single day, at least 25 to 30% of the total breeding population contributed to fertilised eggs that resulted in viable offspring at 50 and 83 days post-hatch. Family representations were highly skewed - with the marked dominance of a few males - and effective breeding populations were consistently low (approx. 5% of the total breeding population). Parental contribution to a group of 960 codlings - produced following intensive commercial practices (i.e. including successive size gradings and mixing of batches) and belonging to a single graded group - was also analysed, based on the genotyping data from eleven loci. The effective breeding population size of the juvenile batch (c. 14% of the total broodstock population) was two to three times greater than the effective size observed on a single day of mass spawning. The per-generation rate of inbreeding was however relatively high, for this batch alone, at 2.5%. Based on these results, suggestions were made to manage hatchery cod broodstock populations and implement genetic selection. Early maturation of farmed cod in sea cages (at two or three years old) is a major concern for ongrowers. Understanding the mechanism(s) behind sex determination in cod would probably help the development of a method to control sexual maturation. In an attempt to elucidate sex determination in cod, a protocol to induce gynogenesis was developed. Gynogenetic fish were successfully produced by irradiating cod milt with UV and applying a cold shock (at -6oC) to newly fertilised eggs. However, due to poor survival during larval rearing, only one gynogenetic fish survived long enough to be sexed; not enough to conclude anything on the sex determination mechanism(s) in cod.

Anecdotal information indicates a resistance to change from federal fish hatchery staff regarding environmentally sustainable infrastructure renewal and hatchery operations. Qualitative research was conducted to investigate this phenomenon, using face-to-face interviews with nine hatchery staff across British Columbia. The interviews were audiotaped and transcribed verbatim, and participants‘ responses remained confidential, due to the relatively small hatchery community. Responses were grouped under two headings, Barriers to Change and Embracing Change, and four distinct themes emerged: Governance, Benefits, Education and Research, and Culture and Personal Beliefs. Barriers to change related to governance emerged as the dominant theme during interviews. This research examines the culture of hatcheries and their perceived governance structure, identifies barriers to implementing change, and makes recommendations to foster effective governance. Characterizing hatchery staff responses to change is a significant step in moving towards environmentally sustainable infrastructure renewal and environmentally sustainable program operations.

This report addresses the problem: how to improve approaches to fish seed production in smallholder aquaculture systems of Northeast Thailand? The work was carried out as a component of the U.K. Government Department for International Development Aquaculture Research Programme funded project, R7052: Improving freshwater fish seed supply and performance in smallholder aquaculture systems in Asia. From 1997 to 2003 the project worked in collaboration with regional partners in Bangladesh, Laos P.D.R., Thailand and Vietnam on constraints to seed production and distribution. The research problem called for improvement, implying that change was required in the way that seed was produced. The hypothesis that active collaboration in research by seed producers and institutional partners, facilitated by project staff would enable all participants to extend their understanding of the situation, contribute to the knowledge base and that resulting accommodations would lead to a continuous process of planning, action and reflection toward changes required for improvement. Reflection on the project outputs indicated that quality of fish seed was variable but there was no agreement on the nature of the problem among stakeholders. The decision was made to shift the research focus away from looking for technical problems and to focus instead on examining ways that existing knowledge could be integrated in a learning process with key stakeholders. The research problem then became to find an appropriate, effective and efficient methodology to achieve this; participatory action research was chosen for evaluation. Participatory action research is a collaborative approach involving the researcher in a facilitative role working with stakeholder groups to enable systematic investigation of issues, planning and action to resolve the issues. Outcomes should be action and public knowledge that feed in to further reflection and action in an ongoing learning cycle. Implementation of the methodology was carried out over two stages; the first planned set of activities involved extension of the existing collaborative arrangement with the Thai Government Department of Fisheries (DoF) and the Asian Institute of Technology Aqua Outreach Programme (AOP) in order to prepare a field research team and plan for field activities. The second stage was participatory action research field work which involved invitations to collaborate being extended to four formal groups and one informal group of hatchery operators in two Provinces of Northeast Thailand. Research facilitated by the research team used a range of participatory methods for identification and prioritisation issues, analysis, action planning, monitoring and evaluation. Actions were supported by the project logistically and financially. The exploratory approach to project planning meant that monitoring processes was as important as monitoring specific indicators. The output of the first set of activities was a formal agreement to collaborate however the strength of the collaboration was indicated by the low level of commitment shown by the DoF and AOP representatives in planning and team building. The lack of commitment had important implications for impact and sustainability of the research. Greater attention to the partnership process was an important lesson. Four of the hatchery operators’ groups approached accepted the invitation to collaborate with the project. This collaboration resulted in a range of knowledge outcomes, the development of social relations horizontally within the hatchery groups and vertically to include individuals from service providing agencies in the local administration. Participatory evaluation by participants and the DoF partners was positive. Evaluation of the project indicated that the approach was; appropriate in terms of the needs of primary stakeholders, the requirements of the donor and the circumstances under which it was carried out; effective in achieving knowledge outcomes that contributed to gains in livelihood assets for participants but ineffective in influencing the policies, institutions and processes that would have ensured sustainable impact from the collaboration as a result of the shortcomings in the institutional partnership arrangements; efficient in terms of resource use to obtain outputs and also in emergence of lessons to inform future practice.

In this report mark-recapture data are analyzed with the use of weighted log-linear models, mosaics, and computer drawings of fish. The data are from salmon hatcheries, subsequent returns to the hatcheries and commercial catches of salmon. The log-linear models were used to study the effects of several variables on catches and returns. It is shown that these variables may have opposite effects depending on the brood year of the fish, that hatchery returns and commercial catches do not respond in the same way to the variables, and that more research is needed to determine the causes of the brood year differences. The mosaics and fish drawings were used to study the migration of the salmon in the ocean. The results confirm that chinook salmon decrease their food intake during the return trip to the hatchery, and they are consistent with theories of ocean migration of other species of salmon. / Thesis / Master of Science (MSc)