Although fatigue is a common symptom in multiple sclerosis (MS), its pathomechanisms are incompletely understood. Glatiramer acetate (GA), an immunomodulatory agent approved for treatment of relapsing-remitting MS (RRMS), possesses unique mechanisms of action and has been shown to exhibit beneficial effects on MS fatigue. The objective of this study was to correlate clinical, neuropsychological, and immunological parameters in RRMS patients with fatigue before and during treatment with GA. In a prospective, open-label, multicenter trial, 30 patients with RRMS and fatigue were treated with GA for 12 months. Inclusion criterion was the presence of fatigue as one of the most frequent and disabling symptoms. Before and during treatment, fatigue was assessed using the Fatigue Severity Scale (FSS), the MS-FSS, and the Modified Fatigue Impact Scale (MFIS). In addition, fatigue and quality of life were assessed using the Visual Analog Scales (VAS). Laboratory assessments included screening of 188 parameters using real-time PCR microarrays followed by further analysis of several cytokines, chemokines, and neurotrophic factors. Fatigue self-assessments were completed in 25 patients. After 12 months of treatment with GA, 13 of these patients improved in all three scales (with the most prominent effects on the MFIS), whereas 5 patients had deteriorated. The remaining 7 patients exhibited inconsistent effects within the three scales. Fatigue and overall quality of life had improved, as assessed via VAS. Laboratory assessments revealed heterogeneous mRNA levels of cytokines, chemokines, and neurotrophic factors. In conclusion, we were not able to correlate clinical and molecular effects of GA in patients with RRMS and fatigue.

Amyloid β (Aβ) is a peptide known to form amyloid fibrils in the brain of patients suffering from Alzheimer’s disease. A complete mechanistic understanding how Aβ peptides form neurotoxic assemblies and how they kill neurons has not yet been achieved. Previous analysis of various Aβ40 mutants could reveal the significant importance of the hydrophobic contact between the residues Phe19 and Leu34 for cell toxicity. For some mutations at Phe19, toxicity was completely abolished. In the current study, we assessed if perturbations introduced by mutations in the direct proximity of the Phe19/Leu34 contact would have similar relevance for the fibrillation kinetics, structure, dynamics and toxicity of the Aβ assemblies. To this end, we rationally modified positions Phe20 or Gly33. A small library of Aβ40 peptides with Phe20 mutated to Lys, Tyr or the non-proteinogenic cyclohexylalanine (Cha) or Gly33 mutated to Ala was synthesized. We used electron microscopy, circular dichroism, X-ray diffraction, solid-state NMR spectroscopy, ThT fluorescence and MTT cell toxicity assays to comprehensively investigate the physicochemical properties of the Aβ fibrils formed by the modified peptides as well as toxicity to a neuronal cell line. Single mutations of either Phe20 or Gly33 led to relatively drastic alterations in the Aβ fibrillation kinetics but left the global, as well as the local structure, of the fibrils largely unchanged. Furthermore, the introduced perturbations caused a severe decrease or loss of cell toxicity compared to wildtype Aβ40. We suggest that perturbations at position Phe20 and Gly33 affect the fibrillation pathway of Aβ40 and, thereby, influence the especially toxic oligomeric species manifesting so that the region around the Phe19/Leu34 hydrophobic contact provides a promising site for the design of small molecules interfering with the Aβ fibrillation pathway.

Background: Tractography has become a standard technique for planning neurosurgical operations in the past decades. This technique relies on diffusion magnetic resonance imaging. The cutoff value for the fractional anisotropy (FA) has an important role in avoiding false-positive and false-negative results. However, there is a wide variation in FA cutoff values. Methods: We analyzed a prospective cohort of 14 patients (six males and eight females, 50.1 ± 4.0 years old) with intracerebral tumors that were mostly gliomas. Magnetic resonance imaging (MRI) was obtained within 7 days before and within 7 days after surgery with T1 and diffusion tensor image (DTI) sequences. We, then, reconstructed the corticospinal tract (CST) in all patients and extracted the FA values within the resulting volume. Results: The mean FA in all CSTs was 0.4406 ± 0.0003 with the fifth percentile at 0.1454. FA values in right-hemispheric CSTs were lower (p < 0.0001). Postoperatively, the FA values were more condensed around their mean (p < 0.0001). The analysis of infiltrated or compressed CSTs revealed a lower fifth percentile (0.1407 ± 0.0109 versus 0.1763 ± 0.0040, p = 0.0036). Conclusion: An FA cutoff value of 0.15 appears to be reasonable for neurosurgical patients and may shorten the tractography workflow. However, infiltrated fiber bundles must trigger vigilance and may require lower cutoffs.

Hepatitis B virus (HBV) is a leading cause of liver disease. Its success as a human pathogen is related to the immense production of subviral envelope particles (SVPs) contributing to viral persistence by interfering with immune functions. To explore cellular pathways involved in SVP formation and egress, we investigated host–pathogen interactions. Yeast-based proteomics revealed Sec24A, a component of the coat protein complex II (COPII), as an interaction partner of the HBV envelope S domain. To understand how HBV co-opts COPII as a proviral machinery, we studied roles of key Sec proteins in HBV-expressing liver cells. Silencing of Sar1, Sec23, and Sec24, which promote COPII assembly concomitant with cargo loading, strongly diminished endoplasmic reticulum (ER) envelope export and SVP secretion. By analysing Sec paralog specificities, we unexpectedly found that the HBV envelope is a selective interaction partner of Sec24A and Sec23B whose functions could not be substituted by their related isoforms. In support, we found that HBV replication upregulated Sec24A and Sec23B transcription. Furthermore, HBV encountered the Sec24A/Sec23B complex via an interaction that involved the N-terminal half of Sec24A and a di-arginine motif of its S domain, mirroring a novel ER export code. Accordingly, an interference with the COPII/HBV cross-talk might display a tool to effectively inhibit SVP release.

Climate and agricultural practice interact to influence both crop production and soil microbes in agroecosystems. Here, we carried out a unique experiment in Central Germany to simultaneously investigate the effects of climates (ambient climate vs. future climate expected in 50–70 years), agricultural practices (conventional vs. organic farming), and their interaction on arbuscular mycorrhizal fungi (AMF) inside wheat (Triticum aestivum L.) roots. AMF communities were characterized using Illumina sequencing of 18S rRNA gene amplicons. We showed that climatic conditions and agricultural practices significantly altered total AMF community composition. Conventional farming significantly affected the AMF community and caused a decline in AMF richness. Factors shaping AMF community composition and richness at family level differed greatly among Glomeraceae, Gigasporaceae and Diversisporaceae. An interactive impact of climate and agricultural practices was detected in the community composition of Diversisporaceae. Organic farming mitigated the negative effect of future climate and promoted total AMF and Gigasporaceae richness. AMF richness was significantly linked with nutrient content of wheat grains under both agricultural practices.

Die vorliegende Arbeit befasst sich mit der unspezifischen Peroxygenase (UPO), einer ausschließlich von Pilzen produzierten Oxidoreduktase. Die Dissertation besteht aus drei wesentlichen Teilen: 1.) Untersuchungen zum Substratspektrum zweier ausgewählter UPOs, 2.) Untersuchungen zur Inaktivierung von UPOs, und 3.) die Etablierung einer Kaskadenreaktion von UPOs und pilzlichen Oxidasen zur Oxidation von Hydroxymethylfurfural (HMF) zu 2,5-Furandicarbonsäure (FDCA). 1) Oxidation ausgewählter organischer Schadstoffe Die Mehrheit der getesteten organischen Schadstoffe (35 von 44 chemischen Verbindungen, vgl. Tabelle 6), inklusive verschiedener Xenobiotika wie chlorierte Benzole und deren Derivate, halogenierte Biphenylether, Nitroaromaten, PAK und Phthalate, wurden durch lediglich zwei UPOs (AaeUPO und MroUPO) oxidativ umgewandelt und damit aktiviert. Die von den UPOs katalysierten Reaktionen waren durch drei Substrat-Eigenschaften limitiert: 1.) sterische Hemmung, u.a. infolge einer hohen Zahl an Substituenten (z.B. Hexachlorbenzol) oder aufgrund der grundsätzliche Sperrigkeit (Größe) des Substrat-Moleküls (z.B. 6-Ring-PAK wie Benzo[g,h,i]perylen), 2.) Inaktivierung des aromatischen Ringes durch elektronenziehende Gruppen (z.B. im Nitrobenzol) und 3.) geringe Bioverfügbarkeit und Wasserlöslichkeit. Während die Verhinderung der Oxidation durch geringe Löslichkeit und sterische Hemmung bereits von Peter (2013) und Poraj-Kobielska (2013) beschrieben wurden, stellt die Limitation durch Substrat-Deaktivierung, wie im Fall des Nitrobenzols, einen neuen Befund. 2) Inaktivierung von UPOs Für alle getesteten UPOs konnte eine intrinsische Katalase-Aktivität nachgewiesen werden, wobei deren Ausmaß unter den getesteten Enzymen stark variierte. So unterschieden sich die katalytischen Effizienzen der Katalase-Aktivität von AaeUPO und rCciUPO um eine Größenordnung, während die der MroUPO sich dazwischen einordnete. Im Rahmen der Untersuchungen konnte für die AaeUPO die Bildung eines reaktionsträgen Intermediats, der UPO-Compound III (cpd-3), nach Exposition gegenüber hohen H2O2-Konzentrationen, gezeigt werden. Außerdem wurde Biliverdin als Abbauprodukt der H2O2-katalysierten Oxidation des UPO-Häms detektiert (inaktivierende Spontan-Oxidation). Diese Verbindung entstand höchstwahrscheinlich durch die Reaktion des Häms mit Hydroxyl-Radikalen (•OH), die wiederum ein Ergebnis der Reaktion der UPO-cpd-3 und H2O2 waren. Als Quintessenz dieser Untersuchungen kann zusammenfassend festgestellt werden, dass es für den schonenden Einsatz und die optimale Performance der UPOs notwendig ist, ein „optimales Verhältnis“ bezüglich der Konzentrationen des Zielsubstrates, des UPO-Proteins und des Peroxids einzustellen. Dieses Verhältnis muss für jede UPO-Substrat-Kombination experimentell empirisch ermittelt werden, wobei als Faustregel gilt: Je niedriger die lokale/stationäre Cosubstrat-Konzentration (H2O2) im Reaktionsmedium ist, desto geringer wird die schädigende Wirkung auf die UPO ausfallen. 3) HMF-Oxidation durch UPOs und pilzliche Oxidasen in einer Kaskaden-Reaktion Obwohl die AaeUPO prinzipiell in der Lage ist, HMF und nahezu jedes seiner primären und sekundären Derivate (mit Ausnahme von 5-Hydroxymethyl-2-furosäure) zu oxidieren, verläuft die vollständige Oxidation nur wenig effizient; insbesondere der letzte Schritt von der 5-formyl-2-furosäure (FFCA) zur FDCA ist reaktionslimitierend. Unter einfachen Reaktionsbedingungen (einmalige Zugabe von H2O2) würde das Peroxid von der AaeUPO unproduktiv verbraucht und das Enzym größtenteils inaktiviert, ohne dass dabei substanzielle Mengen an FDCA gebildet würden. Erst durch die Kombination einer UPO mit geeigneten Oxidasen (Arylalkoholoxidase - AAO und/oder Galactoseoxidase - GAO) konnte die FDCA-Ausbeute substantiell erhöht werden (7,9 mM in 10 mL). Hierbei sind zusammenfassend folgende positive Effekte hervorzuheben: 1.) Oxidasen stellen geeignetes H2O2 für die UPOs bereit, 2.) nur die GAO kann auch intermediär gebildetes HMFCA oxidieren und 3.) durch die schonende Bereitstellung von H2O2 für die UPO verringert sich die lokale Konzentration des Oxidationsmittels soweit, dass eine Schädigung des Enzyms vermieden wird (bei gleichzeitiger substantieller FFCA-Oxidation). Auf dieser Grundlage konnte eine dreistufige enzymatische Synthese von FDCA aus HMF realisiert werden.

Biomolecular condensates are dynamic intracellular structural units or distinct reaction spaces that can form by condensation of their constituents from the cytoplasm or the nucleoplasm. It is generally not clear yet, how dynamic, continuum-like condensate properties relevant for large-scale intracellular organisation emerge from the interplay of proteins and nucleic acids on the level of few individual molecules. With this work, we expand the portfolio of methods to investigate the role of protein-nucleic acid interactions in biomolecular condensates by introducing optical tweezers-based mechanical micromanipulation of single DNA molecules combined with confocal fluorescence microscopy to the field. We used this approach to characterise how the two landmark proteins1 Fused in Sarcoma and Heterochromatin Protein 1 form condensates with single DNA molecules. Fused in Sarcoma (FUS) is a key protein for various aspects of the nucleic acid metabolism and evidence is accumulating that biomolecular condensation is crucial for both, its physiological functions and its role in pathological aggregate formation. In this thesis, we directly visualised the formation of FUS condensates with single molecules of ssDNA and dsDNA. We showed that the formation of these microcondensates is based on nucleic acid scaffolding. We explored their mechanical properties and found that the mechanical tension that (FUS dsDNA) condensates can withstand or exert is in the range below 2 pN. We further demonstrated that already on this fundamental scale and with limited amounts of constituent molecules, dynamic properties like shape relaxations, reminiscent of viscoelastic materials, can emerge. Heterochromatin Protein 1 (HP1) is a prototypic chromatin organising factor that is in particular involved in the formation of dynamically compacted heterochromatin domains. HP1 forms biomolecular condensates and compacts DNA strands in vitro. In this work, we measured the influence of HP1 on the mechanical properties of individual DNA molecules and demonstrated the response of HP1-DNA condensates to different environmental conditions. We contributed a methodological framework to characterise viscoelastic-like systems on the single molecule level. Taken together, our optical tweezers-based approach revealed structural and mechanical properties of prototypic protein-DNA condensates and hence helped to elucidate mechanisms underlying their formation in unprecedented spatiotemporal and mechanical detail. We anticipate that this method can become a valuable tool to investigate how large-scale intracellular organisation based on protein-nucleic acid condensation emerges from interactions between individual building blocks.

Lakes provide essential ecosystem services to humankind, with the provision of freshwater likely being their most important contribution to human well-being. Therefore, it is mandatory to prevent freshwater lakes from harm in order to protect our livelihood. Pollution is known to put the health of our planet at risk, including our aquatic ecosystems. For European lowland surface waters, certain key organisms, including algae, crustacea, and fish, have been shown to be impacted by chemical pollution. However, currently little is known about the influence on other key organisms (e.g. macrophyte communities) and the spatial extent of these impacts. To close these gaps in knowledge and generally develop a better understanding of the impact of chemical pollution on our aquatic environment, is key for its efficient protection and the preservation of its ecosystem services. This dissertation aims to close these knowledge gaps and thereby increase our understanding of the impact of organic chemicals on our aquatic environment. During the course of this dissertation, two field studies and one literature review were conducted. The first field study was performed in eight lowland lakes of Schleswig-Holstein. Goal was to demonstrate that contaminated sediments prevent macrophyte communities from reaching a good ecological state. It was possible to show that sediment toxicity, driven by antifouling biocides and polycyclic aromatic hydrocarbons, is one of the factors that limit the ecological quality macrophyte communities can reach. The second field study was performed in eight lakes of the French Pyrenees. In this case, the aim was to explore the exposure and risk for waterbodies as remote as mountain lakes by organic chemicals. It was found that also mountain lakes are exposed to a wide variety of organic chemicals, including substances introduced via the atmosphere and local sources. All lakes under investigation were experiencing a chronic toxic risk for crustacea and three of eight lakes were even exposed to an acute toxic risk for crustacea. As this risk was also reflected in lowered abundancies of crustacea, this demonstrated that also waterbodies as remote as mountain lakes are impacted by chemical pollution. Following up on these findings, a literature review was performed. While generally little investigated, the data that could be found support the idea that toxic effects on mountain lakes might be widespread. The results of this thesis add to the growing knowledge, indicating that chemical pollution is jeopardizing the ecological quality of our planet and thereby, causing it to become unhealthy and dysfunctional. To protect our aquatic ecosystems, and planetary heath in general, it will be necessary to reduce our emissions of organic chemicals and use of particularly toxic substances.

We investigated the fungus Aspergillus fumigatus PD-18 responses when subjected to the multimetal combination (Total Cr, Cd2C, Cu2C, Ni2C, Pb2C, and Zn2C) in synthetic composite media. To understand how multimetal stress impacts fungal cells at the molecular level, the cellular response of A. fumigatus PD-18 to 30 mg/L multimetal stress (5 mg/L of each heavy metal) was determined by proteomics. The comparative fungal proteomics displayed the remarkable inherent intracellular and extracellular mechanism of metal resistance and tolerance potential of A. fumigatus PD-18. This study reported 2,238 proteins of which 434 proteins were exclusively expressed in multimetal extracts. The most predominant functional class expressed was for cellular processing and signaling. The type of proteins and the number of proteins that were upregulated due to various stress tolerance mechanisms were post-translational modification, protein turnover, and chaperones (42); translation, ribosomal structure, and biogenesis (60); and intracellular trafficking, secretion, and vesicular transport (18). In addition, free radical scavenging antioxidant proteins, such as superoxide dismutase, were upregulated upto 3.45-fold and transporter systems, such as protein transport (SEC31), upto 3.31-fold to combat the oxidative stress caused by the multiple metals. Also, protein–protein interaction network analysis revealed that cytochrome c oxidase and 60S ribosomal protein played key roles to detoxify the multimetal. To the best of our knowledge, this study of A. fumigatus PD-18 provides valuable insights toward the growing research in comprehending the metal microbe interactions in the presence of multimetal. This will facilitate in development of novel molecular markers for contaminant bioremediation.

Humans use land to grow crops for food, and the farming methods we use can influence the organisms that live in the soil. Soil organisms do important work, like decomposing organic matter and releasing nutrients for plant growth. By adding more pesticides and fertilizers to farmland,we can producemore crops in a smaller space. But those methods can also harm soil organisms and the work that they do. In contrast,we can use gentlermethods to growcrops,which are better for soil animals, but those methods require more land. People in all countries need food from crops to live healthy lives. Because we all share one land surface, when we decide how to use land, we need to remember how agriculture influences soil animals.