Marshes and seagrass beds have been widely recognized as important habitat for estuarine species, but less has been done on how these habitats interact and function together, thereby limiting understanding of the variability of juvenile recruitment to coastal systems. Therefore, the objective of this study was to assess the interaction between fringing marsh and adjacent seagrass for the provision of habitat for juvenile nekton. Weekly seine net and benthic seagrass core sampling from June to November 2020 determine the relationship between nekton and marsh-edge and seagrass habitat. This study shows disparate results, in terms of the effects of proximity to marsh edge and seagrass biomass on nekton abundance and size, pointing to different selectivity of marsh edge versus seagrass by different species. In addition, there are no effects of proximity to marsh edge and seagrass biomass on community composition, but an interactive effect on community dispersion.