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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Glycosylation reactions in secondary metabolism : glycosylation events in C-mannosylation and the biosynthesis of kijanimicin

White-Phillip, Jessica Ann 04 September 2015 (has links)
In this work, we examine two disparate aspects of glycosylation. The first project involves the elucidation of the glycosylation of the novel tetronolide natural product, kijanimicin. The biosynthesis of the deoxysugar TDP-L-digitoxose from the kijanimicin natural product pathway was achieved in vitro. The genes were identified from the cluster, cloned, expressed and the products were purified. Activity was demonstrated for the novel enzymes and the pathway was reconstructed in vivo using Streptomyces lividans. These strains of S. lividans were used to examine kijanimicin glycosyltransferase activity. We were able to demonstrate activity for 3 of 4 digitoxosyltransferases in the biosynthetic pathway and propose a biosynthetic scheme by which the tetrasaccharide chain is formed. We identified two putative glycosidases with novel folds, and one glycosyltransferase that appears to have unprecedented activity, attaching 2 if not 3 sugars in sequence. In the second portion of this work, we attempted to identify the eukaryotic C-mannosyltransferase enzyme and demonstrate its activity in vitro and in vivo. Here, we describe our efforts to identify the CMT. Through in silico analysis, putative C-mannosyltransferase genes were identified. These genes were expressed in E. coli and S. cerevisiae, however gene expression was apparently toxic to E. coli. S. cerevisiae expression was acceptable, but extraction proved to be somewhat problematic. We describe our efforts to develop a CMT assay for use in vitro by expressing the putative CMT in insect cells, which was much more promising. We also attempted to knock down the putative CMT genes using shRNA, which demonstrated that the genes of unknown function that were identified were essential for cellular viability. This work has contributed to the fields of both C-mannosylation and natural product glycosylation. We have elucidated the biosynthetic pathway of a novel deoxysugar, and identified potentially valuable tools for glycoengineering including a glycosyltransferase that appears to exhibit novel polymeric activity, as well as identifying two glycosyltransferase proteins that are apparent glycosidases. Our attempts to identify the CMT provided valuable insight into the future development of a C-mannosylation assay, and we have identified several promising protein candidates that are apparently essential for H. sapiens cellular viability.
2

DEVELOPMENT OF A NOVEL LUCIFERASE REPORTER TOOL FOR HIGH THROUGHPUT GENE EXPRESSION ANALYSIS IN STREPTOMYCES

Smith, Margot 10 1900 (has links)
<p>Streptomycetes biology and genetics encompasses a variety of interesting features including multicellular growth, rich secondary metabolite production, and extensive environmental sensory and response systems. The characteristically large genomes of streptomycetes makes studying the diverse external stimuli intricate and internal regulation of these gene systems a challenge. Currently, there does not exist an efficient, cost-effective method of high throughput gene expression analysis in streptomycetes. Luciferase reporters have been used successfully in <em>Streptomyces coelicolor</em> to measure select promoter activity, however, they have demonstrated limited success in other strains and are not favourable to gene expression studies on a larger scale. Here, I present pLHR, a novel luciferase-based reporter tool designed specifically for high throughput gene expression studies in streptomycetes as well as the preliminary results which support the further development of this tool for gene expression profiling in <em>S. coelicolor</em>. Once developed, pLHR may be used to generate libraries of <em>Streptomyces</em> reporter stains to measure promoter activity repeatedly under variable conditions for the duration of the organism’s complex lifecycle.</p> / Master of Science (MSc)

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