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Soybean (Glycine max [L.] Merr.) is one of the most important crops in the world. The average annual yield losses due to soybean diseases and pests are estimated to be around 11% in the United States. Soybean yield losses due to sudden death syndrome (SDS), caused by the fungus Fusarium virguliforme O'Donnell & T. Aoki have been problematic in majority of the soybean producing states. In recent years, reniform nematode (RN, Rotylenchulus reniformis Linford and Oliveira) and frogeye leaf spot (FLS), caused by the fungus Cercospora sojina K. Hara have emerged as a major problem in the southern soybean producing states. Planting resistant cultivars is one of the most cost-efficient methods in managing SDS, RN, and FLS, therefore it would be critical to identify and map the quantitative trait loci (QTL) that underlie their resistances. Two soybean populations were evaluated in this study. The ‘Essex’ × ‘Forrest’ 77 near-isogenic lines were screened in the field to evaluate the disease index of SDS. The Essex × Forrest and ‘Flyer’ × ‘Hartwig’ recombinant inbred lines were screened in the greenhouse to assess the reproduction index of RN and the disease severity of FLS. The BARCSoySNP6k chip was used to genotype the two populations. Four QTL that underlie SDS resistances were mapped in the same region as Rfv06-01, Rfv06-02, Rfv13-01, and Rfv19-01. The Rfv06-02 interval in this study was smaller than the one previously reported. Rrr08-01, Rrr13-01, Rrr15-01, Rrr18-01, and Rrr18-02 were reported to confer resistances to RN. Rrr08-01, Rrr13-01 and Rrr15-01 were novel whereas Rrr18-01, and Rrr18-02 were mapped in previous studies. cqSCN-001 (soybean cyst nematode, Heterodera glycines Ichinohe) was identified in the same region as Rrr18-01, and Rrr18-02 whereas cqSCN-006 was identified in the same region as Rrr15-01. These findings provide further evidence that there are common sources of genetic resistances to RN and SCN. Rcs15-01 and Rcs15-02 were reported to confer resistances to FLS. Rcs15-01 was novel and Rcs15-02 was mapped at the same region as an Rcs mapped in a previous study. This indicated that Rcs15-02 has dual resistances to C. sojina races. Candidate genes were inferred in this study. The QTL mapped in this study could potentially be used in soybean breeding programs that aim to introgress genetic resources that confer resistances to SDS, RN, and FLS.

The tarnished plant bug, Lygus lineolaris (Palisot de Beauvois), is the most important insect pest of cotton, Gossypium hirsutum (L.), in Mississippi. This research project was initiated to gain a better understanding of selected crop production factors that can improve tarnished plant bug integrated pest management. Results suggest that irrigation strategies and varietal pubescence can significantly influence tarnished plant bug management in cotton. Most notably, delaying irrigation for as long as possible and planting hairy varieties can minimize the impact of tarnished plant bug on cotton yields and reduce the number of insecticides needed to manage this pest. Additionally, these results show that tarnished plant bug management is most critical during the first four weeks of flowering. Results from these experiments will be used to improve the current integrated pest management program for tarnished plant bug in cotton and make cotton production more sustainable for Mississippi producers.

Frogeye leaf spot is a foliar disease of soybean caused by Cercospora sojina Hara, which until recently had been successfully managed by quinone outside inhibitor (QoI) fungicides. After widespread resistance to the QoI fungicides was reported throughout Mississippi, the next step in characterizing C. sojina was to study the fitness of selected isolates. Fitness measurements of resistance stability, colony growth, conidia production and germination, and virulence were assessed. A phylogenetic analysis was also conducted to assess the genetic similarity of the QoI-resistant and -sensitive C. sojina isolates. All isolates remained stable in terms of QoI resistance. Results of all fitness measurements indicated no significant differences between the QoI-resistant and -sensitive C. sojina isolates. The phylogenetic analysis supported these results revealing similarity between QoI-resistant and -sensitive C. sojina isolates. Based on these results no indication of a fitness cost is associated with QoI resistance in C. sojina isolates from Mississippi soybean.

Abiotic stress tolerance and biotic stress resistance have long been targets for trait improvement in the field of plant breeding. To date, much of the target crop focus has been centered on commodity crops such as corn, soybean, wheat, and rice. However, little work has been conducted on improvement of these traits in forage grasses. This is due to a number of issues, particularly that most species are obligately outcrossing, the traits are governed by many genes at unknown loci, and are greatly affected by environmental variation. This creates major complications in successfully selecting and breeding populations of forage grasses tolerant to extreme high or low temperatures, as well as disease resistance. Recurrent phenotypic selection was used to select elite individuals of annual ryegrass (Lolium multiflorum Lam.) and orchardgrass (Dactylis glomerata L.) that expressed improved germination at high temperature. Selections were conducted within growth chambers at fixed temperature and light regimes (40/30 DEGREES C, 12/12 hr, light/darkness) to eliminate environmental variation. Following three cycles of selection, we observed gains (P LESSTHAN 0.001) in selection over the base population for both species. Annual ryegrass mean cumulative germination for cycle 3 peaked at 45.8%, and orchardgrass mean cumulative germination for cycle 3 peaked at 82.67%. Further selection of annual ryegrass for freezing tolerance was also conducted. Flats of unselected germplasm were grown to the three-leaf stage, then frozen for nine hours. Significant differences (P LESSTHAN 0.05) in freezing tolerance were observed between selected germplasm in both cycle 1 (0.076%) and cycle 2 (0.125%) over the unselected cycle 0 (0.025%). Finally, initial stages of resistance breeding work were conducted involving gray leaf spot (causal agent Pyricularia grisea Cke. [Sacc.]) on annual ryegrass. Isolates of the pathogen were obtained and stored for future use. It was determined that the actual pathogen species responsible was Pyricularia oryzae Cavara. Future work for annual ryegrass and orchardgrass germplasm that germinates at high temperatures will involve variety testing and cultivar release. Freezing tolerance and disease resistance work will require larger-scale screening methodology that was able to be conducted in this work to acquire sufficient population sizes for breeding.

Phenotypic plasticity and developmental instability in leaf traits are common in oak species but the role of environmental factors is not well understood. To decipher possible correlations between different leaf traits and effects of the position of leaves within the tree canopy, we quantified the plasticity of three leaf traits of 30 trees of Quercus alba L., Quercus palustris Muench and Quercus velutina Lam. We hypothesized that trees could modify the shape of their leaves for better adaptation to the variable microclimate within the canopy. Our results demonstrated that the south and north outer leaves were significantly smaller, more lobed and denser than those situated in the inner canopy. The order of leaves on the branch accounted for the plasticity of leaf traits in Q. alba only. Plasticity of lobing in Q. alba and Q. velutina depended on the height of the trees. We detected fluctuating asymmetry (FA) in all three species, but the source of variation depended on branch position in Q. velutina only. FA was more pronounced in north-facing leaves. Plasticity of the leaf traits ranged from small to medium. Plasticity of leaf area and leaf mass per area (LMA) depended on the branch position. However, the plasticity of lobation was not affected by the location of a branch within the tree canopy. Quercus alba and Q. palustris had similar plastic responses but the plasticity of Q. velutina was significantly smaller. We concluded that individual plants detect and cope with environmental stress through vegetative organ modification.

Gray leaf spot (GLS) of corn (Zea mays L.), caused by the fungus Cercospora zeaemaydis (CZM) (Tehon and Daniels) has increased in incidence and severity with increasing use of no-tillage and continuous corn practices. This disease can be yield limiting. Corn hybrids were evaluated under natural disease pressure for three years (1989, 90, and 91) at two locations (Montgomery and Wythe Co., VA). Yield losses ranged from 2127.4 kg/ha (Wythe Co., 1991) to 4242.2 kg/ha (Wythe Co., 1990). It was estimated that 77% of the variability in yield was due to GLS. Fungicides were evaluated for the control of GLS over three years on a susceptible hybrid, Pioneer Brand 3320. All fungicides, with the exception of mancozeb, provided significant control over nontreated check in all years. Benomyl, propiconazole and terbutrazole were the most effective fungicides. As much as 93% of the variablilty in yield was attributed to blighting. Reduction in blighting also increased the kernel weight. The toxin, cercosporin, produced by CZM was evaluated for its ability to elicit differential responses in corn germplasm by three methods, ie., vein inoculation, root, and shoot uptake. No consistant differential reponses were found with vein inoculation, but 31-day old plants were significantly more sensitive to the toxin than 21-day old plants, as measured by lesion width. Root and shoot uptake of the toxin by inbred germplasm produced lesions that resembled those produced by CZM in the field. Microscopic, yellow fluorescing crystals were found associated with necrotic tissue from toxin-treated inbreds. Significantly more injury occurred to toxin-treated inbreds exposed to light than to darkness. By chromatographic analysis, 407.1-1076.7 ng of toxin/g of tissue was recovered from leaf lesion extracts of plants exposed to light. Five inbreds (B73, H99, Va59, NC250a, and NC264) showed consistent and differential responses to the toxin. H99 and NC250a showed differential responses to the same concentration of toxin, thus suggesting that some germplasm are more sensitive to the toxin than others. Tests using the toxin as a means to identify resistant germplasm did not provide reliable predictions of germplasm response to CZM in the field. / Master of Science

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In north Mississippi, I evaluated fuel loads in the late dormant season and after leaf fall in unburned areas and after a dormant season burn. Fuel loads beneath winged elm (Ulmus alata) were assessed to determine if this shade-tolerant species impacts fine fuel loads in the area immediately near its bole. I found leaf litter fuel loads are higher after leaf fall suggesting that burns conducted closer to leaf fall may have increased burn intensity. Burning reduced leaf litter fuels and exposed mineral soil which returned to pre-burn levels following leaf fall. Declines in duff layer fuels were not evident until after leaf fall. Leaf litter fuels underneath winged elms had higher mass and percentage of winged elm litter beneath them compared to areas away from them. These results will help determine appropriate time for restoring prescribed fire and the implications of encroachment by non-oak species into upland oak forests.

Frogeye leaf spot (FLS), caused by Cercospora sojina Hara, is a foliar disease of soybean (Glycine max (L.) Merr.). FLS has re-emerged as an important disease due to the widespread QoI-resistant fungal population in Mississippi. Growers have transitioned from a stand-alone QoI fungicide to a multi-mode of action fungicide. One disadvantage of certain MOA’s is phytotoxicity. Phytotoxicity is a concern among soybean growers as to whether or not yield is lost. Disease, phytotoxicity, green stem, yield, plant morphology, and grain quality were analyzed to determine the impacts of fungicide phytotoxicity. Yield was significantly and negatively correlated as a result of phytotoxicity. Numerical differences in phytotoxicity severity were observed among all cultivars. Phytotoxicity severity were greatest in the Hornbeck 4950 LL with an average of 26.9%. Tank-mixing dodine with Manniplex B Moly, Megafol, and Veritas decreased phytotoxicity by 8.5, 2.7, 11.4% compared to dodine as a stand-alone treatment, respectively.