Diss. (sammanfattning) Uppsala : Sveriges lantbruksuniversitet, 2007. / Härtill 4 uppsatser.

Pour diversifier leur matériel génétique, s’adapter aux perturbations environnementales et coloniser de nouvelles niches, les bactéries utilisent plusieurs processus évolutifs dont l’acquisition de matériel génétique par transfert horizontal de gènes comme la conjugaison, la transduction et la transformation. À ces trois mécanismes naturels s’ajoute l’électrotransformation due aux phénomènes électriques liés à la décharge de foudre. La présence dans les nuages de bactéries aérosolisées capables de former des noyaux de glace à l’origine des précipitations et impliquées dans le déclenchement de la foudre, telles que la bactérie phytopathogène à répartition mondiale Pseudomonas syringae, nous a conduit à proposer que l’électrotransformation naturelle dans les nuages pouvait affecter les bactéries, contribuant ainsi à augmenter leur potentiel adaptatif. Dans un premier temps, nous avons déterminé si la bactérie glaçogène P. syringae pouvait survivre à des électroporations simulant des décharges de foudre et acquérir du matériel génétique exogène dans les nuages. Comparée à deux autres bactéries, P. syringae se révèle être mieux adaptée pour la survie et l’électrotransformation génétique, ce qui suggère qu’elle serait capable de survivre et d’évoluer durant son transport dans les nuages. Nous avons ensuite évalué l’impact d’électroporations simulant les décharges de foudre sur la survie, le potentiel d’électrotransformation et la diversité de bactéries présentes dans des échantillons de pluie comme substitut des communautés bactériennes des nuages. Ces dernières étaient plus résistantes que les souches de laboratoire et certaines étaient capables d’acquérir de l’ADN exogène par électrotransformation. Les bactéries de la pluie isolées provenaient de différentes origines et présentaient différents modes de vie, représentatifs des sources probables d’émissions de bactéries terrestres. Cette étude montre que les bactéries aérosolisées de divers écosystèmes terrestres sont susceptibles de se disséminer dans de nouveaux habitats grâce aux nuages tout en étant capable d’acquérir de nouveaux gènes par éléctrotransformation, et d’augmenter ainsi potentiellement leur diversité génétique. La dernière partie de mon travail a évalué si l’électrotransformation appliquée aux bactéries indigènes du sol pouvait être employée pour dépolluer les sols contaminés par un pesticide largement utilisé autrefois, le lindane. L’optimisation des expériences met en évidence l’incorporation par les bactéries indigènes d’un plasmide contenant le gène codant les premières déchlorinations du lindane au travers d’une combinaison de transformation naturelle et d’électrotransformation. En conclusion, nous avons montré que l’électrotransformation naturelle liée aux décharges électriques, comme celles se produisant dans les nuages ou atteignant le sol, peut être impliquée dans le transfert horizontal de gènes chez les bactéries et, considérant l’importance de la foudre à travers le monde, pourrait jouer un rôle dans l’adaptation et l’évolution de ces organismes. / To diversify their genetic material, allowing adaptation to environmental disturbances and colonization of new ecological niches, bacteria use various evolutionary processes, including the acquisition of new genetic material by horizontal transfer mechanisms such as conjugation, transduction and transformation. Electrotransformation mediated by lightningrelated electrical phenomena may constitute an additional gene transfer mechanism occurring in nature. The presence in clouds of bacteria capable of forming ice nuclei that lead to precipitations and are involved in the triggering of lightning, such as the global phytopathogen Pseudomonas syringae, led us to postulate that natural electrotransformation in clouds may affect bacteria, by contributing to increase their adaptive potential. We first determined if the ice nucleator bacterium P. syringae could survive when in clouds and acquire exogenous genetic material through lightning shock-simulating in vitro electroporation. In comparison to two other bacteria, P. syringae appears to be best adapted for survival and for genetic electrotransformation under these conditions, which suggests that this bacterium would be able to survive and evolve whilst being transported in clouds. Secondly, we evaluated the impact of lightning shock-simulating in vitro electroporation on the survival, the electrotransformation potential and the diversity of bacteria collected from rain samples. These isolates better resisted lightning than the laboratory strains and some were able to electrotransform exogenous DNA. The rain bacteria we isolated were of different origins and were representative of life modes of the various sources of bacterial emissions on Earth. Our study suggests that bacteria aerosolized from diverse terrestrial ecosystems can spread to new habitats through clouds whilst also being able to acquire new genetic material via lightning-based electrotransformation, thereby potentially enhancing their genetic diversity. The final part of our work consisted of evaluating whether electrotransformation could be applied to the engineering of indigenous soil bacteria in order to develop a tool for the bioremediation of lindane, a once widely used pesticide. Optimized experiments revealed that both natural and electrotransformation contributed to the incorporation of a plasmid harboring a gene encoding the first lindane dechlorination steps by indigenous soil bacteria. In conclusion, we showed that natural electrotransformation mediated by electrical discharges such as those occurring in clouds or reaching soils can be involved in the horizontal gene transfer process among bacteria and, considering the importance of lightning worldwide, may play a role in the adaptation and evolution of these organisms.

Les organochlorés (OCs) -molécules utilisées dans des procédés industriels et en applications agricoles dont la plupart sont interdites d'utilisation de nos jours- sont considérés comme des polluants très persistants représentant une menace pour les eaux de surfaces et souterraines, le sol et l'atmosphère. Des méthodes alternatives de décontamination de sites pollués aux OCs sont développées utilisant des technologies in situ d'écoremédiation. L'objectif du projet de thèse est d'étudier les capacités de phytoremédiation des OCs par deux plantes modèles, Zea mays et Phragmites australis. Les OCs choisis dans cette étude sont, le lindane (γHCH), le monochlorobenzène (MCB), le 1,4-dichlorobenzène (DCB) et le 1,2,4-trichlorobenzène (TCB). Notre approche a été de considérer l'impact sur les fonctions physiologiques des plantes de chaque OC en mono-exposition, puis de comparer ces mêmes réponses physiologiques en multi-exposition. Ce travail a permis de mettre en évidence un effet synergique de l'action du mélange des OCs. Toutefois, Z. mays et P. australis tolérent des concentrations OCs largement supérieures aux concentrations environnementales mesurées in situ. La phytoextraction des OCs a été démontrée par nos expériences en conditions contrôlées et en utilisant des molécules 14C-OCs. Les OCs sont majoritairement bioconcentrés au niveau des organes souterrains des plantes. Enfin, cette étude montre une adaptation de la microflore bactérienne de la rhizosphère en présence d'un gradient d'exposition aux OCs (multi-exposition). Les approches d'isolement et d'études d'empreintes moléculaires (ARNr 16S, SSCP, pyroséquançage 454) ont permis de détecter des souches potentiellement capables d'assurer une rhizodégradation des OCs.

To diversify their genetic material, allowing adaptation to environmental disturbances and colonization of new ecological niches, bacteria use various evolutionary processes, including the acquisition of new genetic material by horizontal transfer mechanisms such as conjugation, transduction and transformation. Electrotransformation mediated by lightningrelated electrical phenomena may constitute an additional gene transfer mechanism occurring in nature. The presence in clouds of bacteria capable of forming ice nuclei that lead to precipitations and are involved in the triggering of lightning, such as the global phytopathogen Pseudomonas syringae, led us to postulate that natural electrotransformation in clouds may affect bacteria, by contributing to increase their adaptive potential. We first determined if the ice nucleator bacterium P. syringae could survive when in clouds and acquire exogenous genetic material through lightning shock-simulating in vitro electroporation. In comparison to two other bacteria, P. syringae appears to be best adapted for survival and for genetic electrotransformation under these conditions, which suggests that this bacterium would be able to survive and evolve whilst being transported in clouds. Secondly, we evaluated the impact of lightning shock-simulating in vitro electroporation on the survival, the electrotransformation potential and the diversity of bacteria collected from rain samples. These isolates better resisted lightning than the laboratory strains and some were able to electrotransform exogenous DNA. The rain bacteria we isolated were of different origins and were representative of life modes of the various sources of bacterial emissions on Earth. Our study suggests that bacteria aerosolized from diverse terrestrial ecosystems can spread to new habitats through clouds whilst also being able to acquire new genetic material via lightning-based electrotransformation, thereby potentially enhancing their genetic diversity. The final part of our work consisted of evaluating whether electrotransformation could be applied to the engineering of indigenous soil bacteria in order to develop a tool for the bioremediation of lindane, a once widely used pesticide. Optimized experiments revealed that both natural and electrotransformation contributed to the incorporation of a plasmid harboring a gene encoding the first lindane dechlorination steps by indigenous soil bacteria. In conclusion, we showed that natural electrotransformation mediated by electrical discharges such as those occurring in clouds or reaching soils can be involved in the horizontal gene transfer process among bacteria and, considering the importance of lightning worldwide, may play a role in the adaptation and evolution of these organisms.

The three insecticides of interest were lindane (an organochlorine), malathion (an organophosphate) and piperonyl butoxide (PBO; a synergist). Based on minimum cytotoxicity (> LC25), the following concentrations were chosen for the pesticide mixture studies: 70μM lindane (Lind), 50μM malathion (Mal) and 55μM PBO. In the AlamarBlue cytotoxicity assay, individual pesticide and mixtures of malathion/PBO (MP) and malathion/lindane (ML) prompted cytotoxicity with varying intensities (Mal 18.8%, Lind 20.4%, PBO 23.5%, ML 53.6% and MP 64.9%). Cytopathological analysis revealed apoptotic features in treated cells and the DNA Ladder Assay confirmed the presence of DNA fragments. The specific mode of cell death was examined via the 7-aminoactinomycin D (7-AAD) Staining Assay. Apoptosis was detected in each treatment (Mal 6.5%, Lind 12.0%, PBO 13.2%, ML 19.3% and MP 23.4%). Furthermore, 7-AAD staining in combination with fluorescent-labeled monoclonal antibodies, PE-CD45RB/220 and FITC-CD90, was performed. B-cells were more susceptible to Mal and PBO treatments than were T-cells. The pro-oxidant activity of the pesticides was monitored via the Dichlorofluorescin Diacetate assay. Exposure to pesticides for 15 minutes increased H2O2 production above the controls, Mal 21.1%; Lind 10.8%; PBO 25.9%; ML 26.8%; MP 37.8%. The activities of antioxidant enzymes, glutathione peroxidase (GSH-Px) and glutathione reductase (GR) were altered by these treatments. GR was significantly reduced for the pesticide mixtures only (control: 51.7; Mal: 48.2; Lind: 50; PBO: 52.3; ML: 40.5; MP: 42 Units/mg). GSH-Px activity was severely reduced for all the pesticide treatments (control: 44.9; Mal: 30.2; Lind: 30.6; PBO: 32.4; ML: 21.1; MP: 21.1 Units/mg). These results indicate that exposure to these pesticide and pesticide mixtures induces apoptosis and oxidative stress. / Master of Science

M. Tech. (Biotechnology) Vaal University of Technology / One of the major problems encountered in qualitative and quantitative determination of residual pesticides by gas chromatography is the matrix effects. Matrix components have a considerable effect on the way analysis is conducted and the quality of results obtained, introducing problems such as inaccurate quantification, low analyte delectability and reporting of false positive or even false negative results. It was aimed to develop and validate a suitable method for counteracting the matrix effects so as to improve the detection and quantification of selected organochlorine pesticide residues from real water samples. The real water samples used were sampled from three points along the Jukskei River catchment area in Gauteng, South Africa for a period of 7 months from January to July 201 0 so as to create a representative sample. An automated solid phase extraction (SPE) method coupled to Gas ChromatographyMass Spectrometry (GC-MS) method for the analysis of 20 selected organochlorine pesticides was developed and validated for the purposes of studying the matrix effects. The analytical method showed a significant degree of validity when tested against parameters such as linearity, repeatability and sensitivity. Endosulphan beta, 4,4' Dichlorodiphenyldichloroethane, and Heptachlor-epoxide had the broadest linear calibration ranges of 1 ppm- 0.0156 ppm. Benzene hexachloride (BHC) delta and Lindane had the lowest statistical limits of detection of 0.018 ppm. Statistical hypothesis testing indicated that there was significant linearity in all selected organochlorine calibration curves. Four different reversed sorbent phases, including LC18, SC18- E and Strata-X (styrene divinyl benzene) were tested for organochlorine retention efficiency. The LC-18 200 mg cartridge proved to be the most robust and effective sorbent phase as it produced better recoveries varying from 90-130% for most analytes. A breakthrough volume of 100 ml for the LC-18 200 mg cartridge was determined using an optimum matrix load curve. It was then concluded that the method developed was suitable for further research towards the influence of the matrix on selective determination of the selected organochlorine pesticides. Four different calibration methods, namely matrix-free external standard, matrixmatched external standard, matrix-free internal standard and matrix-matched internal standard were applied to test the efficiency of computing recoveries. All calibration curves for the 20 organochlorine pesticides showed significant linearity > 0.99 when plotted on both Chemstation and Excel. The calibration methods were tested on three different matrices composed of a high sample matrix (synthetic matrix), a low sample matrix (real sample matrix) and a no sample matrix (ultrapure water). Statistical hypothesis testing led to the decision that there are significant differences between the mean recoveries of the three water sample matrices and also that the differences in the mean recoveries of the three sample matrices are independent of the both the two calibration techniques (internal standard and external standard) and calibration types (matrix-matched and matrix-free) applied. This led to the overall conclusion that the matrix effects have an overwhelming influence on the selective determination of the selected organochlorine pesticides.