Thesis (M.S.)--University of Missouri-Columbia, 2007. / The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. Title from title screen of research.pdf file (viewed on March 19, 2008) Includes bibliographical references.

Thesis (Ph.D.)--University of Delaware, 2008. / Principal faculty advisor: Tobin A. Driscoll, Dept. of Mathematical Sciences. Includes bibliographical references.

Thesis (M.S.)--University of Alabama at Birmingham, 2009. / Description based on contents viewed June 2, 2009; title from PDF t.p. Includes bibliographical references (p. 71-76).

Thesis (MTech (Mechanical Engineering))--Cape Peninsula University of Technology, 2009. / Includes bibliographical references (leaves 94-98). Also available online.

Kernel-based meshless methods for approximating functions and solutions of partial differential equations have many applications in engineering fields. As only scattered data are used, meshless methods using radial basis functions can be extended to complicated geometry and high-dimensional problems. In this thesis, kernel-based least-squares methods will be used to solve several direct and inverse problems. In chapter 2, we consider discrete least-squares methods using radial basis functions. A general l^2-Tikhonov regularization with W_2^m-penalty is considered. We provide error estimates that are comparable to kernel-based interpolation in cases in which the function being approximated is within and is outside of the native space of the kernel. These results are extended to the case of noisy data. Numerical demonstrations are provided to verify the theoretical results. In chapter 3, we apply kernel-based collocation methods to elliptic problems with mixed boundary conditions. We propose some weighted least-squares formulations with different weights for the Dirichlet and Neumann boundary collocation terms. Besides fill distance of discrete sets, our weights also depend on three other factors: proportion of the measures of the Dirichlet and Neumann boundaries, dimensionless volume ratios of the boundary and domain, and kernel smoothness. We determine the dependencies of these terms in weights by different numerical tests. Our least-squares formulations can be proved to be convergent at the H^2 (Ω) norm. Numerical experiments in two and three dimensions show that we can obtain desired convergent results under different boundary conditions and different domain shapes. In chapter 4, we use a kernel-based least-squares method to solve ill-posed Cauchy problems for elliptic partial differential equations. We construct stable methods for these inverse problems. Numerical approximations to solutions of elliptic Cauchy problems are formulated as solutions of nonlinear least-squares problems with quadratic inequality constraints. A convergence analysis with respect to noise levels and fill distances of data points is provided, from which a Tikhonov regularization strategy is obtained. A nonlinear algorithm is proposed to obtain stable solutions of the resulting nonlinear problems. Numerical experiments are provided to verify our convergence results. In the final chapter, we apply meshless methods to the Gierer-Meinhardt activator-inhibitor model. Pattern transitions in irregular domains of the Gierer-Meinhardt model are shown. We propose various parameter settings for different patterns appearing in nature and test these settings on some irregular domains. To further simulate patterns in reality, we construct different kinds of domains and apply proposed parameter settings on different patches of domains found in nature.

Radial basis function (RBF) methods for partial differential equations (PDEs), either in bulk domains, on surfaces, or in a combination of the formers, arise in a wide range of practical applications. This thesis proposes numerical approaches of RBF-based meshless techniques to solve these three kinds of PDEs on stationary and nonstationary surfaces and domains. In Chapter 1, we introduce the background of RBF methods, some basic concepts, and error estimates for RBF interpolation. We then provide some preliminaries for manifolds, restricted RBFs on manifolds, and some convergence properties of RBF interpolation. Finally, implicit-explicit time stepping schemes are briefly presented. In Chapter 2, we propose methods to implement meshless collocation approaches intrinsically to solve elliptic PDEs on smooth, closed, connected, and complete Riemannian manifolds with arbitrary codimensions. Our methods are based on strong-form collocations with oversampling and least-squares minimizations, which can be implemented either analytically or approximately. By restricting global kernels to the manifold, our methods resemble their easy-to-implement domain-type analogies, that is, Kansa methods. Our main theoretical contribution is a robust convergence analysis under some standard smoothness assumptions for high-order convergence. We simulate reaction-diffusion equations to generate Turing patterns and solve shallow water problems on manifolds. In Chapter 3, we consider convective-diffusion problems that model surfactants or heat transport along moving surfaces. We propose two time-space algorithms by combining the methods of lines and kernel-based meshless collocation techniques intrinsic to surfaces. We use a low-order time discretization for fair comparison, and higher-order schemes in time are possible. The proposed methods can achieve second-order convergence. They use either analytic or approximated spatial discretization of the surface operators, which do not require regeneration of point clouds at each temporal iteration. Thus, they are alternatively applied to handle models on two types of evolving surfaces, which are defined as prescribed motions and governed by geometric evolution laws, respectively. We present numerical examples on various evolving surfaces for the performance of our algorithms and apply the approximated one to merging surfaces. In Chapter 4, a kernel-based meshless method is developed to solve coupled second-order elliptic PDEs in bulk domains and on surfaces, subject to Robin boundary conditions. It combines a least-squares kernel-based collocation method with a surface-type intrinsic approach. We can thus use each pair for discrete point sets, RBF kernels (globally and restrictedly), trial spaces, and some essential assumptions, to search for least-squares solutions in bulks and on surfaces, respectively. We first analyze error estimates for a domain-type Robin-boundary problem. Based on this analysis and the existing results for surface PDEs, we discuss the theoretical requirements for the Sobolev kernels used. We then select the orders of smoothness for the kernels in bulks and on surfaces. Finally, several numerical experiments are demonstrated to test the robustness of the coupled method in terms of accuracy and convergence rates under different settings.

Thesis (MEng)--Stellenbosch University, 2014. / ENGLISH ABSTRACT: In this thesis we set out to design an algorithm for solving the all-pairs fixed-radius nearest neighbours search problem for a massively parallel heterogeneous system. The all-pairs search problem is stated as follows: Given a set of N points in d-dimensional space, find all pairs of points within a horizon distance of one another. This search is required by any nonlocal or meshless numerical modelling method to construct the neighbour list of each mesh point in the problem domain. Therefore, this work is applicable to a wide variety of fields, ranging from molecular dynamics to pattern recognition and geographical information systems. Here we focus on nonlocal solid mechanics methods. The basic method of solving the all-pairs search is to calculate, for each mesh point, the distance to each other mesh point and compare with the horizon value to determine if the points are neighbours. This can be a very computationally intensive procedure, especially if the neighbourhood needs to be updated at every time step to account for changes in material configuration. The problem also becomes more complex if the analysis is done in parallel. Furthermore, GPU computing has become very popular in the last decade. Most of the fastest supercomputers in the world today employ GPU processors as accelerators to CPU processors. It is also believed that the next-generation exascale supercomputers will be heterogeneous. Therefore the focus is on how to develop a neighbour searching algorithm that will take advantage of next-generation hardware. In this thesis we propose a CPU - multi GPU algorithm, which is an extension of the fixed-grid method, for the fixed-radius nearest neighbours search on massively parallel systems. / AFRIKAANSE OPSOMMING: In hierdie tesis het ons die ontwerp van ’n algoritme vir die oplossing van die alle-pare vaste-radius naaste bure soektog probleem vir groot skaal parallele heterogene stelsels aangepak. Die alle-pare soektog probleem is as volg gestel: Gegewe ’n stel van N punte in d-dimensionele ruimte, vind al die pare van punte wat binne ’n horison afstand van mekaar af is. Die soektog word deur enige nie-lokale of roosterlose numeriese metode benodig om die bure-lys van alle rooster-punte in die probleem te kry. Daarom is hierdie werk van toepassing op ’n wye verskeidenheid van velde, wat wissel van molekulêre dinamika tot patroon herkenning en geografiese inligtingstelsels. Hier is ons fokus op nie-lokale soliede meganika metodes. Die basiese metode vir die oplossing van die alle-pare soektog is om vir elke rooster-punt, die afstand na elke ander rooster-punt te bereken en te vergelyk met die horison lente, om dus so te bepaal of die punte bure is. Dit kan ’n baie berekenings intensiewe proses wees, veral as die probleem by elke stap opgedateer moet word om die veranderinge in die materiaal konfigurasie daar te stel. Die probleem word ook baie meer kompleks as die analise in parallel gedoen word. Verder het GVE’s (Grafiese verwerkings eenhede) baie gewild geword in die afgelope dekade. Die meeste van die vinnigste superrekenaars in die wêreld vandag gebruik GVE’s as versnellers te same met SVE’s (Sentrale verwerkings eenhede). Dit is ook van mening dat die volgende generasie exa-skaal superrekenaars GVE’s sal implementeer. Daarom is die fokus op hoe om ’n bure-lys soektog algoritme te ontwikkel wat gebruik sal maak van die volgende generasie hardeware. In hierdie tesis stel ons ’n SVE - veelvoudige GVE algoritme voor, wat ’n verlenging van die vaste-rooster metode is, vir die vaste-radius naaste bure soektog op groot skaal parallele stelsels.