M.Sc. (Aquatic Health) / Yellowfish and specifically Labeobarbus marequensis are a charismatic species targeted by anglers throughout South Africa. Their population are limited to the north-western parts of the country including the lower reaches of the Crocodile River that flows through the Kruger National Park (KNP). Despite conservation efforts the Crocodile River in the KNP is still highly impacted. The effect of these impacts on the ecosystem is largely unknown. The main aim of the study was to determine the influence of changing water quantity and quality in the Crocodile River on adult L. marequensis. This was achieved by evaluating altered flows (discharge) on the behaviour of adult L. marequensis in the Crocodile River using biotelemetry over a two year period. The influence of altered water quality was assessed using metal bioaccumulation as an indicator of metal exposure in L. marequensis, Clarias gariepinus and Hydrocynus vittatus in the Crocodile and Sabie Rivers during a high and low flow season. Biotelemetry was used on 16 L. marequensis and 12 H. vittatus to determine the habitat use and movement responses of the species. Fish were tagged with Advanced Telemetry Systems (ATS) and Wireless Wildlife (WW) tags and tracked remotely and manually. Home ranges were determined using Arc GIS ®, Habitat uses were analyzed using Windows Excel (© 2011, Microsoft inc.). Environment variables recorded were scored as primary and secondary and then combined with a weighting variable 2:1 ratio (primary variable: secondary variable). A mixed-model analysis of variance (ANOVA) approach with a random co-efficients model and Akaike’s information criteria (AIC) were used to test for significance. Analyses were conducted using SAS version 9 (SAS institute, Cary, NC)...

Ph.D. / The Crocodile River catchment, in Mpumalanga, is one the most intensively used catchments in South Africa. The large number of intensively cultivated crops grown in the middle and lower subcatchments; industrial discharges; highly intensive irrigation; and extensive areas of exotic afforestation in the upper and middle sub-catchments has dramatically changed land use patterns within the catchment. The Middle Crocodile River sub-catchment is also impacted by intensive urbanisation; around Nelspruit, KaNyamazane and Matsulu. The Kaap River sub-catchment has been intensively mined for minerals and the impacts of these mining operations are still reflected in the water quality of streams and rivers in this sub-catchment. The downstream uses of the Crocodile River's water quality are the aquatic ecosystem, the Kruger National Park (as the river is the southern boundary of the park) and Mozambique (international obligations). The Crocodile River catchment supports one of the richest fish species diversities in South Africa. It is therefore important to determine the impacts of these land use activities on the fish populations and the potential human health risks if fish are consumed. In the present study data from five gauging stations for each of the main tributaries draining the five sub-catchments (the Upper, Middle and Lower Crocodile River, Kaap and Elands Rivers) were used. The water quality and quantity was determined from Department of Water Affairs and Forestry's (DWAF) National Hydrological Chemical Data Bank. Assessments of water quality (chemical, physical), sediment characteristics, and fish biological characteristics were undertaken at each of the chosen sampling sites. Water and fish samples were collected seasonally on ten sampling trips during the study period, June 1989 to September 1992. Eleven species of fish were collected, by means of gill and seine nets, at eight sites. The biological characteristics of the larger fish captured were measured and tissue (gills, liver, muscle, intestine, ovaries, testes and abdominal fat) samples were collected. These samples were analysed for eleven metals and Pyrethroid, Carbamate, Organochlorine, Organophosphate and Triazine pesticides. Sediment core samples were collected and determinations made of particle size, percentage organics, metals and pesticides. Standard methods were used for the determination of .the metal and pesticide concentrations in the water, sediment and fish tissues. The pesticide use per crop for South Africa was determined from a data-base. This data was used to determine the potential pesticide runoff from the different crops in the sub-catchments and to compare with the sediment and fish tissue levels recorded. The water quality status of the Crocodile River catchment is impacted by a variety of diffuse and point sources of pollution. The water quality indicated that diffuse sources of pollution originated from afforestation in the Upper, Middle and Kaap River sub-catchments; current and abandoned mining activities in the Kaap River sub-catchment; runoff from irrigated lands in the Middle, Lower and Kaap River sub-catchments; and wastes from industrial activities in the Elands and Middle sub-catchments. Point sources of pollution in the Crocodile River include ndustrial and waste water treatment works discharges mainly in the Middle sub-catchment.

M.Sc. (Zoology) / The world’s ever increasing human population has lead to an almost unimaginable amount of waste being released in to the aquatic environment every day. Aquatic systems are faced with the greatest risk due to the fact that water is an indispensable resource required for industrial and agricultural processes. In recent years there has been a dire need for the monitoring and rehabilitation of aquatic systems. As a result many biological monitoring programmes were set into place in an attempt to manage this problem. The use of aquatic organisms as sentinels for biomonitoring studies has been wildly accepted with the majority of biomonitoring research focusing on the use of various fish and invertebrate species as aquatic sentinel organisms. However, the use of parasites as sentinel organisms is a relatively new field and as a result there has been little published work on the use of monogenean ectoparasites parasites as such sentinels. The bioaccumulation and subsequent biomagnification of metals by certain parasite species is well known, with bulk of the published work focusing on endoparasites (cestodes, acanthocephalans & nematodes), these published studies indicate that some species of endoparasites exhibit a remarkable ability to biomagnify metals in concentrations that far exceed that of their respective hosts as well as the ambient environment. Thus this project aims to assess the bioaccumulation and biomagnification of metals by the ectoparasitic diplozoon. The study site that was chosen for this project was the Vaal Dam; this site was deemed appropriate due to its near pristine condition and major economic importance. This meant that this particular site is ideal for the testing of a new biomonitoring system. All field sampling was performed around UJ Island (26°52.249’S; 20°10.249’E) from February 2011 to April 2011. A total of 29 Labeo umbratus (Smith, 1841) were collected with the aid of gill nets and three sediment samples were also taken using a grab sampler. Water quality data was obtained from the Rand Water Analytical Facility in Vereeniging as this organisation routinely monitors of the water quality parameters and the metal concentrations within the surface waters of the Vaal Dam, this information was obtained with the aid of data loggers situated in the dam...

Ph.D. / The current study evaluated a bio-monitoring technique developed in the USA by Adams, Brown and Goede, 1993. This project was sponsored by the Department of Water Affairs and Forestry (DWAF), to enable testing of the Health Assessment Index (HAI) under South African conditions. Testing took place in the Olifants River system, one of the most polluted river systems . in South Africa. Initially two river points were tested using Oreochromis mossambicus (Robinson, 1996), Clarias gariepinus (Marx, 1996) and Labeo rosae (Luus-Powell, 1997). The current study re-tested the HAI at the same two sample sites, namely Mamba and Balule in the Kruger National Park, using 0. mossambicus and C. gariepinus respectively. Two additional sites were tested in the upper catchment area, namely Loskop Dam and Bronkhorstspruit Dam. The current study further enabled the comparison of HAI results collected during drought and flood conditions. Results obtained after deployment of the HAI were corroborated using chemical analysis of water, sediment and biota. Water and sediment analysis was carried out by the Institute for Water Quality Studies using standard techniques. Bio-accumulation of aluminium, copper, iron, lead, manganese, nickel, strontium and zinc was assessed in the gills, liver, skin and muscle tissue of sample fish using standard Atomic Absorption Spectrometry techniques. Modifications made to the original HAI involved the inclusion of variable ranking in the assessment of fish parasites, with endo- and ectoparasites evaluated separately. Testing of this parasite hypothesis lead to the development of a Parasite Index component to the HAI. Assessment of water, sediment and fish tissue determined that the Olifants River system is indeed exposed to macro and heavy metal pollutants, which negatively affect aquatic health. Constituents posing the greatest threat are chlorides, fluorides, phosphates, total dissolved solids, copper and iron concentrations. Testing the HAI and parasite hypothesis using C. gariepinus, provided the most meaningful results. During testing of the parasite hypothesis both endo- and ectoparasite numbers conformed to the suggested idea that higher endoparasite numbers will occur at highly impacted areas, whereby ectoparasite numbers will be low. This was particularly evident in the lower catchment area, whereby comparisons between drought and flood conditions were carried out. Subsequent decreases in water quality directly after the flood were noted using water and sediment analysis. This observation reflects the results gathered using the HAT and during testing of the parasite hypothesis at all four sample sites. During statistical analysis of the HAI, using logistic regression analysis, parasite numbers, more specifically endoparasite numbers, were the most indicative of fish health. Environmental stressors (flood conditions) result in immunological responses observed in fish, and are reflected statistically using the HAI as changes in WBC %. It is suggested that endoparasites and WBC % provide the best overall assessment of fish condition. These variables should thus not be eliminated, in order to streamline the HAI evaluation procedures. Testing of this bio-monitoring technique under South African conditions provided meaningful results. This indicates that the HAI can be used to assess water quality, with existing water monitoring programmes further benefiting from its incorporation.