<p>Diversity in coloration is a common phenomenon in marine invertebrates, although the ecological significance of the diversity is often unknown. Patterns of geographic variability, particularly with respect to color phenotypes, are evident in many organisms and may provide visual evidence of natural selection. </p><p>This dissertation examined the geographic and genetic variability of color patterns and morphology of the sea urchin <italic>Lytechinus variegatus </italic>. This study had 3 objectives: 1) to describe and quantify phenotypic diversity--color and morphology--throughout the geographic range; 2) to determine the heritability of color in genetic crosses between individuals with similar and differing phenotype; 3) to assess the degree of genetic divergence between and within the regions and congruence between the phylogenetic mitochondrial COI data and color phenotypes seen in the field.</p><p>The distribution of color phenotypes in the field is highly variable across the geographic range which stretches from Beaufort NC to southern Brazil and throughout the Gulf of Mexico and Caribbean. Urchins in each of the 5 regions sampled (Beaufort, Gulf, Keys, Panama and Brazil) have a distinct phenotypic composition despite the presence of similar color morphs. The two regions at the extremes--Beaufort and Brazil--demonstrate the most homogeneous phenotypes, each with a single dominant color morph. The Keys has the most heterogeneous composition with all 14 color morphs present. Morphological diversity mirrors color diversity in being highly variable across the range. Urchins in Beaufort are significantly different morphologically from urchins in the central portion of the range, with thicker, flatter tests and longer more robust spines.</p><p>The heritability of color phenotypes and morphology suggests that genes rather than environment have a major role in color phenotype and patterning as well as morphology in test, spines and lanterns. F₁ and F₂ offspring of Beaufort and Tavernier Key crosses resemble the parental phenotypes in both morphology and color phenotype. Hybrids from crosses between regions have a mixed color palette and intermediate morphological characteristics. The crosses establish that in <italic>L. variegatus </italic>the white phenotype is a dominant autosomal trait and green and purple are recessive and co-expressed. Patterning of the test and spines is dominant to non-patterning. </p><p>Analysis of the mitochondrial COI gene in urchins from Beaufort, Gulf and Keys regions revealed two clades. Clade 1 composed exclusively of Keys urchins differed significantly (F_ST = 0.89, <italic>P</italic> < 0.001) from Clade 2 composed of urchins from Beaufort, Gulf and Keys. Genetic differentiation within Clade 2 was zero, indicating that urchins in these regions are genetically identical. The genetic split between phenotypically indistinguishable Keys urchins suggests cryptic species. Genetic differentiation does not concord with phenotypic and morphological differentiation. No structure was detected with regards to color phenotype in either clade or region of origin in Clade 2.</p> / Dissertation

The natural instability of hydrothermal vents creates variable environmental conditions among habitat patches. Habitat differences correspond to phenotypic variation in Ridgeia piscesae, the only ‘vent tubeworm’ on the spreading ridges of the Northeast Pacific. Ridgeia piscesae that occupy high fluid flux habitats have rapid growth rates and high reproductive output compared to tubeworms in habitats with low rates of venting fluid delivery. As recruitment occurs in all settings, worms in the “optimal habitat” may act as source populations for all habitat types. Ridgeia piscesae is a foundation species in the Endeavour Hydrothermal Vents Marine Protected Area of the Juan de Fuca Ridge. The objective of this thesis was to assess fine scale population structure in Ridgeia piscesae within the Endeavour vent system using genetic data. Population structure was assessed by analysis of the mitochondrial COI gene in 498 individuals collected from three vent sites of the Juan de Fuca Ridge; Middle Valley (n=26), Endeavour Segment (n=444) and Axial Volcano (n=28). Genotyping using microsatellite markers was attempted but all loci developed for closely related tubeworm species failed to amplify microsatellites in Ridgeia piscesae. Sequence analysis identified 32 mitochondrial COI haplotypes; one dominant haplotype (68%), three common haplotypes (4%-7%) and the remainder were rare (<2%). Axial Volcano was differentiated from Middle Valley and Endeavour. Within Endeavour, genetic sub-structuring of Ridgeia piscesae occurred among vent fields (Clam Bed, Main Endeavour and Mothra) and habitat types < 10 km apart. Patterns of genetic variation and coalescent based models suggested that gene flow among vent fields moved in a north to south direction in individuals from high flux habitat but from south to north in individuals from low flux habitat. Tubeworms from low flux habitat had more nucleotide polymorphisms and haplotypes than those from high flux habitats. Estimates of the number of immigrants per generation moving from high flux to low flux subpopulations was four times higher than in the reverse direction. The effective population size was estimated to be three times greater in high flux habitat when the generation times for individuals from each habitat type were considered. Demographic tests for population equilibrium identified a recent and rapidly expanding metapopulation at Endeavour. Models of gene flow in Ridgeia piscesae reflected the general oceanographic circulation described at Endeavour. Genetic data illustrate that dispersing larvae exploit the bi-directional currents created through plume driven circulation within the Endeavour axial valley and suggest that adult position on or near chimneys may influence larval dispersal trajectories upon release. Building on known ecological and biological features, this study also showed that Ridgeia piscesae from limited and ephemeral high flux habitat act as sources to the overall metapopulation and that asymmetrical migration and habitat stability sustain high genetic diversity in low flux sinks. The overall metapopulation at Endeavour experiences frequent extinction and recolonization events, differences in individual reproductive success, and source-sink dynamics that decrease the overall effective size and genetic diversity within the population. These factors have important implications for the conservation of a foundation species. / Graduate / 0307 / 0329 / 0369 / lcpuetz@uvic.ca

Le charançon de la carotte (Listronotus oregonensis) s’avère un ravageur important des cultures d’apiacées en Amérique du Nord. Une recrudescence des dommages a été observée ces dernières années, et ce, malgré toutes les mesures de contrôle mises en place. Cette étude visait à déterminer la structure génétique des populations du charançon de la carotte en Amérique du Nord et d’évaluer le rôle de la distance géographique et de la plante hôte sur leur niveau de différenciation génétique. La préférence olfactive envers la plante hôte sur laquelle les charançons d’une même population s’y sont développés a aussi été analysée. La caractérisation de la structure génétique de L. oregonensis s’appuyait sur la discrimination des haplotypes (ADNmt COI) et des nucléotides (SNPs) par génotypage-par-séquençage (GBS). Dix-huit populations incluant 220 individus ont été échantillonnées au Québec, en Ontario, en Nouvelle-Écosse (Canada) et en Ohio (États-Unis). L’olfactométrie examinait la réponse olfactive de trois populations du Québec (195 femelles) en fonction de quatre plantes hôtes (carotte, céleri, céleri-rave et persil). Nos résultats ont montré que la distance géographique s’avère un facteur important de différenciation génétique entre les régions échantillonnées. Les analyses de GBS identifient la Nouvelle-Écosse comme étant la région la plus différenciée de toutes les populations analysées contrairement aux analyses de l’ADNmt COI qui suggèrent une différenciation récente. La plante hôte n’entraîne pas de signature génétique distincte chez le ravageur au Québec, et les trois populations testées n’ont pas présenté de préférence marquée pour une plante hôte, hormis la population issue du champ de carotte. Ces résultats suggèrent une capacité de dispersion limitée du charançon de la carotte à travers l’Amérique du Nord. / The carrot weevil (Listronotus oregonensis) is a major pest of apiaceae crops in North America. An upsurge in damage has been observed in recent years, despite all the control measures deployed. This study aimed to determine the genetic structure of carrot weevil populations in North America and to assess the role of geographic distance and host plants on their level of genetic differentiation. The olfactory preference of carrot weevils for the host plant on which the populations were collected was also analyzed. The characterization of the genetic structure of L. oregonensis was based on the discrimination of haplotypes (COI mtDNA) and nucleotides (SNPs) by genotyping-by-sequencing (GBS). Eighteen populations including 220 individuals were sampled in Quebec, Ontario, Nova Scotia (Canada) and Ohio (United States). Olfactometry examined the olfactory response of three populations in Quebec (195 females) according to four host plants (carrot, celery, celeriac and parsley). Our results showed that geographic distance was an important factor in genetic differentiation between the regions sampled. GBS analyzes identify Nova Scotia as the most differentiated region of all populations, unlike COI mtDNA analyzes, which suggest recent differentiation. The host plant did not demonstrate a distinct genetic signature in Quebec, and the three populations tested did not show a marked preference for a host plant, apart from the carrot field population. Finally, these results suggest limited dispersal of the carrot weevil across North America.