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Techniky pro zarovnávání skupin biologických sekvencí / Techniques for Multiple Sequence AlignmentsHrazdil, Jiří January 2009 (has links)
This thesis summarizes ways of representation of biological sequences and file formats used for sequence exchange and storage. Next part deals with techniques used for sequence pairwise alignment, followed by extension of these techniques to the problem of multiple sequence alignment. Additional methods are introduced, that are suboptimal, but on the other hand are able to compute results in reasonable time. Practical part of this thesis consists of implementing multiple sequence alignment application in Java programming language.
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Microbial Community Structure and Interactions in Leaf Litter in a StreamDas, Mitali 13 April 2006 (has links)
No description available.
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Statistické vyhodnocení fylogeneze biologických sekvencí / Statistic evaluation of phylogeny of biological sequencesVadják, Šimon January 2014 (has links)
The master's thesis provides a comprehensive overview of resampling methods for testing the correctness topology of the phylogenetic trees which estimate the process of phylogeny on the bases of biological sequences similarity. We focused on the possibility of errors creation in this estimate and the possibility of their removal and detection. These methods were implemented in Matlab for Bootstrapping, jackknifing, OTU jackknifing and PTP test (Permutation tail probability). The work aims to test their applicability to various biological sequences and also to assess the impact of the choice of input analysis parameters on the results of these statistical tests.
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