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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Genetic Determinants of Enhancer Activation in Human Colon Cancer Epigenomes

Hung, Stevephen January 2019 (has links)
No description available.
2

Non-coding constraint mutations impact the gene regulatory system in osteosarcoma

Pensch, Raphaela January 2021 (has links)
The non-coding space makes up around 98 % of the genome, but cancer-driving mutations have so far mostly been discovered in protein-coding regions. The majority of somatic non-coding mutations are neutral passenger mutations and identifying non-coding mutations with driving roles in cancer poses a challenge. In this work, evolutionary constraint was used to explore the non-coding space in human osteosarcoma to improve our understanding of how evolutionary constraint can be applied to identify non-coding driver mutations in cancer and describe the unknown role of non-coding mutations in osteosarcoma. Evolutionary constraint scores derived from an alignment of 33 mammals were used to extract non-coding mutations in functional elements from somatic variants of 38 osteosarcoma samples and genes with an enrichment of non-coding constraint mutations in their regulatory regions were identified. The investigation of those genes revealed that non-coding constraint mutations are likely involved in key osteosarcoma pathways. Furthermore, novel osteosarcoma genes and mechanisms were proposed based on the non-coding constraint mutation enrichment analysis. The regulatory potential of individual non-coding constraint mutations was evaluated based on regulatory annotations, functional evidence, transcription factor affinity predictions and electrophoretic mobility shift assays. We concluded that the analysis of non-coding constraint mutations is an efficient way to discover non-coding mutations with functional impact in osteosarcoma which likely play an important role in the disease.

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