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Transport and pathogenicity of Salmonella enterica subspecies in groundwater in vitro, in vivo, and in silico /Haznedaroğlu, Berat Zeki. January 2010 (has links)
Thesis (Ph. D.)--University of California, Riverside, 2010. / Includes abstract. Available via ProQuest Digital Dissertations. Title from first page of PDF file (viewed May 18, 2010). Includes bibliographical references. Also issued in print.
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A nanoscale investigation of pathogenic microbial adhesion in biomaterial systemsEmerson, Ray Jenkins. January 2006 (has links)
Dissertation (Ph.D.)--Worcester Polytechnic Institute. / Keywords: nanotechnology, biomaterials, atomic force microscopy, pathogenic. Includes bibliographical references. (p.337)
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Detection and quantification of pathogens, proteins, and molecules using piezoelectric-excited millimeter-sized cantilever (PEMC) sensors /Campbell, Gossett A. Mutharasan, Rajakannu. January 2006 (has links)
Thesis (Ph. D.)--Drexel University, 2006. / Includes abstract and vita. Includes bibliographical references (leaves 341-367).
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Comparative analysis and partial annotation of the genome of Bacillus Thuringiensis /Biliya, Shweta, January 2008 (has links)
Thesis (M.S.)--University of Texas at Dallas, 2008. / Includes vita. Includes bibliographical references (leaves 39-43)
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The pathogenic and toxic effects of the fungus Beauveria bassiana on Manduca sexta larvaeFoley, J. M. January 2000 (has links)
No description available.
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Studies of the lipopolysaccharide from the intracellular pathogens Francisella tularensis and Francisella novicidaCowley, Siobhán Clare 30 August 2017 (has links)
Francisella tularensis and Francisella novicida are closely related
facultative intracellular pathogens capable of survival and growth
within macrophages. In this work we present evidence to show that F.
tularensis uses phase variation to alter lipopolysaccharide (LPS)
antigenicity, macrophage nitric oxide (NO) production, and microbial
intramacrophage growth. The LPS and lipid A of F. tularensis LVS fail
to stimulate production of significant levels of nitric oxide by rat
macrophage monolayers. However, spontaneous variants of F. tularensis
expressing an antigenically distinct LPS induce rat macrophages to
produce increased levels of NO, thereby suppressing intracellular
growth. This new form of LPS produced by F. tularensis is also the predominant form of LPS found normally in F. novicida. Rat macrophages infected with F. novicida produce high levels of NO and exhibit suppression of intracellular growth. LPS and lipid A isolated
from F. novicida and variants of F. tularensis stimulate increased levels of NO production.
In addition, a reverse phase shift can occur which returns the LPS of the F. tularensis
variants to the original antigenic form, resulting in reduced macrophage NO production and restoration of intracellular growth. These results suggest that F. tularensis can
modulate macrophage NO production through phase variation of its LPS.
It was of interest to initiate a study that would ultimately
characterize the molecular mechanism of LPS phase variation in
Francisella tularensis . To this end, we used shuttle mutagenesis to
create a mutant library of F. novicida. We mutagenized a size-
restricted plasmid library of F. novicida with the erythromycin-
resistant transposon TnMax2. Putative F. novicida LPS mutants created
by shuttle mutagenesis were screened visually for aberrant colony
phenotypes on agar plates. Of 10464 mutants screened, 5 unique F.
novicida LPS mutants were isolated which exhibit three distinct LPS
phenotypes as determined by Western immunoblot. A single mutant from
each of the three phenotypic groups was further characterized with respect to DNA sequence analysis, intramacrophage growth, and sensitivity to detergent and serum complement. Furthermore, these three loci were shown to hybridize with a corresponding locus in F. tularensis LVS. However, there was no difference in the restriction pattern of the hybridizing bands between LVS and its LPS phase variants, thus indicating that no major genetic rearrangements or insertion/deletion of a large mobile genetic element occurs in these genes during the phase variation process of F. tularensis.
The F. novicida valAB locus has previously been cloned, sequenced, and
shown to be functionally homologous to the E. coli genes msbA/lpxK. In
order to investigate the hypothesis that valAB is involved in transport of LPS to the cell surface, an E. coli strain harboring an NTG-mutagenized temperature sensitive (t.s.) allele of valAB, a nonfunctional copy of msbA/lpxK, and an IPTG-inducible copy of the
gene encoding the Chlamydia trachomatis genus-specific LPS epitope
(gseA) was constructed. In this study, DNA sequencing was used to
locate the temperature sensitive mutations in the valAB locus. Two C
to T transitions were found in the valA coding region which result in
a S to F change at amino acid 543 and a T to I change at amino acid
458. The ability of E. coli cells harboring this t.s. copy of valAB to
transport the Chlamydia LPS epitope across the inner membrane at the
permissive and non-permissive temperatures was determined using
sucrose density gradient centrifugation and ELISA. It was determined
that there was increased association of the LPS epitope with the inner
membrane at the non-permissive temperature, thus suggesting that ValA
is required for transport of an LPS precursor across the inner membrane. / Graduate
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Detection of Vibrio cholerae and Vibrio parahaemolyticus by molecular and culture methods from source water to household container-stored water at the point-of-use in rural Vhembe communities in South AfricaNtema, Vusi McMillan 25 March 2010 (has links)
M.Tech. / With the recent cholera outbreak in Zimbabwe and the outbreak taking a sub-regional dimension with cholera cases being reported from neighbouring countries like Botswana and South Africa, there was a need to monitor drinking water from environmental water sources as well as household water-storage containers at the point-of-use in rural communities. Although conventional culture-based microbiological methods for the identification of Vibrio species from environmental water samples are reliable, they require several days to complete (Khan and Cerniglia, 1994). Culture dependent and culture independent methods for the detection of Vibrio cholerae and Vibrio parahaemolyticus from water samples were optimised during the current study. With these methods, the occurrence and distribution of V. cholerae and V. parahaemolyticus in source waters as well as in household container stored-waters at the point-of-use in the Nwanedi Catchment, was determined. The culture based approach analyses involved the enrichment of water samples in alkaline peptone water (APW) for 18 hours at 37°C followed by culture on selective thiosulfate-citrate-bile salts-sucrose (TCBS) agar. Typical colonies on TCBS agar were confirmed using the API 20NE as well as the two multiplex polymerase chain reactions (m-PCR). The culture independent PCR approach was done by filtering 100 ml of the water sample onto polycarbonate membranes followed by DNA extraction from the bacteria captured on the membranes using an adaptation of the in-house DNA extraction method used in the laboratory. This DNA was used as template for the m-PCR’s. For the culture based PCR detection, 100 ml water was filtered onto nitrocellulose membranes followed by 18 hours enrichment in APW. DNA was then extracted from the enrichment broth and subsequently used as template for the m-PCR’s. All water samples were analysed with all three methods to compare the results and determine the most effective method for the detection of the two-selected Vibrio species present in water samples. PCR analyses were performed using two m-PCR assays targeting the SodB (V. cholerae species), FlaE (V. parahaemolyticus species) and 16S rRNA (Vibrio and Enterobacteriacea species) genes (Multiplex 1) and the V. cholerae O1 and V. cholerae O139 rfb genes, ctxA (cholera toxin) gene and 16S rRNA gene (Multiplex 2). The 16S rRNA primers were included in the Multiplex PCR’s as an internal control. The m-PCR assays were 100% specific for total and toxigenic V. cholerae and total V. parahaemolyticus when using target bacteria and various other non-target bacteria. The m-PCR assays when coupled with an 18 hours enrichment step could detect as few as 4-10 V. cholerae and V. parahaemolyticus cells in pure cultures as well as in spiked environmental water samples. Fifty water-storage containers and 56 environmental water samples (river, spring and borehole) from rural households in the Vhembe district of the Limpopo Province of South Africa were tested for the presence of selected Vibrio’s, using (1) the standard culture based approach, (2) PCR detection without enrichment and (3) PCR with a brief pre-enrichment. Container water samples were collected before [referred to as free volume (FV) of water] and after dislodging of the biofilm [referred to as dislodged biofilm (BD)] from the inner sidewalls of containers. Of the samples analysed with the standard cultured based technique combined with colony confirmation using m-PCR 1, 34 (12.8%) tested positive for the presence of V. cholerae (SodB gene), 2 (1.3%) for the presence of V. parahaemolyticus (FlaE gene) and all the samples tested positive for the 16S rRNA gene. In contrast, only 1 (0.6%) tested positive for the presence of V. cholerae and 0 (0%) for the presence of V. parahaemolyticus when the isolates were confirmed with API 20NE. With the culture dependant PCR method, 65 (41.7%) of the samples tested positive for the presence of V. cholerae, 3 (1.9%) for the presence of V. parahaemolyticus and all the samples tested positive for the 16S rRNA gene. Seventeen (10.9%) of the samples tested positive for the presence of V. cholerae (SodB) and 16S rRNA genes, 0 (0%) for the presence of V. parahaemolyticus (FlaE gene) with the culture independent direct PCR detection protocol. All the samples that tested positive for V. cholerae with any of the three methods were tested for the presence of toxigenic V. cholerae species with the second multiplex PCR. Six of the source water samples tested positive for V. cholerae O1 as well as the cholera toxin genes. Of the 56 source water samples, 14 (25%) were positive for V. cholerae and 0 (0%) were positive for V. parahaemolyticus with one or all of the methods. Six (10.7%) of the V. cholerae positive samples tested positive for V. cholerae O1 rfb gene, and ctxA gene (cholera toxin). Thirty (60%) of the 50 FV and 28 (56%) of the DB water samples tested positive for V. cholerae, and 3 (6%) of the FV and 0 (0%) of the DB samples tested positive for V. parahaemolyticus with one or all of the methods. None of the positive V. cholerae samples tested positive for the presence of toxigenic V. cholerae. The results presented suggest that the use of culture-based techniques alone is inadequate for detection of selected Vibrio’s in the environmental water samples and that such techniques are not enough to guarantee satisfactory protection of human health. The combination of filtration, enrichment, DNA extraction and m-PCR method provide a sensitive and specific method for the detection of V. cholerae and V. parahaemolyticus in environmental water samples. This method proved to be the most effective for detection and identification of selected Vibrio’s when compared to the culture based method and PCR without enrichment method. The inclusion of an enrichment period allows for the detection of culturable bacteria which is crucial as PCR detection does not give indications on the viability of the detected material. The enrichment period will also dilute any inhibitors for the m-PCR’s that may be present. Detection of V. cholerae and V. parahaemolyticus in the source water used by the population and in the water-storage containers indicates possible seeding of containers with Vibrio species from the source water. Furthermore, the detection of these organisms in DB samples indicates that these organisms attach to containers’ inner sidewalls, forming biofilms, further sustaining their occurrence and proliferation. The detection of V. cholerae and V. parahaemolyticus in household water-storage containers certainly places the consumers at risk of infection of diseases caused by these organisms.
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Characterization of a putative pilus assembly and secretion system in Pseudomonas aeruginosa DSM 1707Van Schalkwyk, Antoinette 01 June 2005 (has links)
Please read the abstract in the section 00front of this document / Dissertation (MSc (Microbiology))--University of Pretoria, 2005. / Microbiology and Plant Pathology / unrestricted
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The potential of spice oils in the control of mycotoxin producing fungiJuglal, Sarla January 2000 (has links)
Submitted in fulfillment of the requirements for the Degree of Master of Technology: Biological Sciences at Technikon Natal, 2000. / Spice oils are known to exhibit antifungal activity and therefore have the potential to control mycotoxin production. There is a need in the food industry to find measures to control mycotoxins that are frequently associated with grains that form the staple diet of the majority of the population in South Africa. Clove, cinnamon, oregano, tumeric, eucalyptus, neem, aniseed, mace and nutmeg oils were tested to determine their inhibitory potential against growth of Aspergillus parasiticus and Fusarium moniliforme using the agar overlay technique. Varying concentrations of the spice oils, ranging from 0.1 ppm to 2.0 ppm, were incorporated into broth cultures of A. parasiticus and maize patty cultures ofF. moniliforme. Levels of production of aflatoxins and fumonisin were determined using standard thin layer chromatography and highpressure liquid chromatography methods. In addition, the active component of the spice oils were isolated, characterised and tested. The inhibitory potential of these compounds for field use was tested by incorporating clove oil, whole cloves and ground cloves in samp / M
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Effects of parental divergence on hybridization and hybrids in the human pathogenic CryptococcusYou, Man January 2021 (has links)
Hybridization refers to mating between species or between genetically differentiated populations of the same species. Although hybrid offspring may exhibit sterility and/or inviability, hybridization can generate novel genotypic and phenotypic diversities, leading to the origin of new traits and new species, the expansion into ecological niches outside of the parental range (e.g., host range), and altered virulence properties in pathogens. However, the relationship between parental genetic divergence and hybrid performance remains largely unknown. The human pathogenic Cryptococcus (HPC) is an ideal model to study the impacts of parental divergence on the genetic and phenotypic consequences of hybridization. HPC consists of a group of divergent lineages with various degrees of interfertility. These yeasts are the etiologic agents of cryptococcosis, a potentially lethal disease in humans and animals. In this thesis, I examined the effects of parental divergence on cryptococcal hybrids from multiple aspects. I conducted genetic crosses between different lineages to evaluate the mating success and the germination of sexual spores (i.e., basidiospores) under various environmental conditions. Then, I investigated the genotypic and phenotypic diversities among the hybrids under different environmental conditions. Furthermore, I examined the genome stability of diploid inter-lineage hybrids through laboratory experimental evolution and the effect of antifungal drug stress on the loss of heterozygosity (LOH) in these hybrids. We found that parental genetic divergence plays an important role in genotypic and phenotypic diversities among hybrid progeny in HPC. However, our results indicate that parental genetic di-vergence alone can’t explain most of the observed variations. Instead, genetic divergence along with specific parental strains, environmental factors, and their interactions all contributed to hybridization success and to hybrid genotypic and phenotypic variations. My findings will broaden the current understanding of the phenotypic and genotypic consequences of hybridization and explore the connection between genetic architecture and hybrid speciation in the human pathogenic Cryptococcus. / Thesis / Doctor of Science (PhD) / The role of hybridization in evolution can vary widely, giving rise to hybrid vigor and hybrid weakness. Hybridization plays an important role in plants and animals, especially crops, with advantages of increased yield and quality of products. However, the emergence of hybrid vigor in pathogens with increased virulence is an increasing threat to plant, animal, and human healths. My PhD thesis aimed at understanding the effects of parental divergence on hybridization and hybrids in the human pathogenic Cryptococcus. Here, I investigated basidiospore germination rate and hybrid progeny genotypes and phenotypes from diverse genetic crosses in this group of pathogens. My findings contribute towards understanding cryptococcal hybrids and establishing treatment plans against infections by these hybrids.
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