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Au Yuen-yee. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2001. / Includes bibliographical references (leaves 140-152). / Abstracts in English and Chinese. / Abstract --- p.iii / Acknowledgements --- p.v / Chapter Chapter One: --- General Background and Introduction --- p.1 / Chapter 1 -1 --- Introduction --- p.1 / Chapter 1-2 --- Three-Bond Coupling Constants (3J) --- p.1 / Chapter 1-2-1 --- Development of the Karplus Equation --- p.1 / Chapter 1-2-2 --- Application of3J in the Conformational Analysis of Nucleic Acid --- p.4 / Chapter 1-2-3 --- Problem of Accuracy for3 J Measurement --- p.7 / Chapter 1-3 --- Two-Bond Coupling Constants (2J) --- p.7 / Chapter 1-3-1 --- The Use of the Projection Method --- p.7 / Chapter 1-3-2 --- 2J Coupling Constant Involving Hydrogen Bonds --- p.8 / Chapter 1-4 --- One-Bond Coupling Constants (1J) --- p.10 / Chapter 1-5 --- Conclusion --- p.11 / Chapter Chapter Two: --- Experimental Section / Chapter 2-1 --- Introduction --- p.12 / Chapter 2-2 --- Heteronuclear Multiple-Quantum Coherence (HMQC) Experiment --- p.12 / Chapter 2-3 --- Experimental Section --- p.15 / Chapter 2-3-1 --- Sample Preparation --- p.15 / Chapter 2-3-2 --- NMR Spectroscopy --- p.16 / Chapter Chapter Three: --- Theory of Nuclear Spin-Spin Coupling Constants --- p.18 / Chapter 3-1 --- Introduction --- p.18 / Chapter 3-2 --- Application of Finite Perturbation Theory on Nuclear Spin-Spin Coupling --- p.18 / Chapter 3-3 --- Methodology --- p.22 / Chapter Chapter Four: --- DFT and NMR Study of1JCH Coupling Constants --- p.28 / Chapter 4-1 --- Introduction --- p.28 / Chapter 4-2 --- Nomenclature and Definition of Structural Parametersin DNA and RNA --- p.28 / Chapter 4-2-1 --- "Nomenclature, Symbols and Atomic Numbering Schemes" --- p.28 / Chapter 4-2-2 --- Definition of Torsion Angles and their Rangesin Nucleotides --- p.31 / Chapter 4-2-3 --- Description of the Furanose Ring --- p.31 / Chapter 4-3 --- Results and Discussion --- p.37 / Chapter 4-3-1 --- Basis Set Effect --- p.37 / Chapter 4-3-2 --- Relative Conformational Energy Profiles --- p.37 / Chapter 4-3-3 --- Comparison of the Dependence of 1JCH Coupling Constants on Conformational Changes With and Without the DNA Backbone --- p.40 / Chapter 4-3-4 --- Effect of Backbone 3'- and 5'-Phosphate --- p.42 / Chapter 4-3-5 --- Effect of Glycosidic Torsion Anglex --- p.49 / Chapter 4-3-6 --- Effect of Ring Conformation with Fixed Glycosidic Torsion Anglex --- p.52 / Chapter 4-3-7 --- Effect of Torsion Angle α --- p.52 / Chapter 4-3-8 --- Effect of Torsion Angle β --- p.53 / Chapter 4-3-9 --- Effect of Torsion Angle γ --- p.56 / Chapter 4-3-10 --- Effect of Torsion Angle ε --- p.59 / Chapter 4-3-11 --- Effect of Torsion Angle ζ --- p.61 / Chapter 4-3-12 --- Effect of Base Pairing --- p.65 / Chapter 4-3-13 --- Effect of Base Stacking from the (n-1) and (n+1) Base --- p.65 / Chapter 4-3-14 --- Comparison of Experimental and Theoretical Data --- p.68 / Chapter 4-4 --- Conclusion --- p.74 / Chapter Chapter Five: --- DFT Study of 2JCH and 3JCH Coupling Constants --- p.79 / Chapter 5-1 --- Introduction --- p.79 / Chapter 5-2 --- Results and Discussion on 2JCH Coupling Constants --- p.79 / Chapter 5-2-1 --- Effect of Backbone 3'- and 5'-Phosphate --- p.79 / Chapter 5-2-2 --- Effect of Ring Conformation with Fixed Glycosidic Torsion Anglex --- p.82 / Chapter 5-2-3 --- Effect of Glycosidic Torsion Anglex --- p.87 / Chapter 5-2-4 --- Effect of Torsion Angleγ --- p.87 / Chapter 5-2-5 --- Effect of Torsion Angle ε --- p.90 / Chapter 5-2-6 --- Effect of Base Pairing --- p.90 / Chapter 5-2-7 --- Effect of Base Stacking from the (n-1) and (n+1) Base --- p.90 / Chapter 5-3 --- Results and Discussion on 3JCH Coupling Constants --- p.95 / Chapter 5-3-1 --- Effect of Backbone 3'- and 5'-Phosphate --- p.95 / Chapter 5-3-2 --- Effect of Ring Conformation with Fixed Glycosidic Torsion Anglex --- p.95 / Chapter 5-3-3 --- "Effect of Different Torsion Angles (X,α,β,γ,ε,and ζ)" --- p.100 / Chapter 5-3-4 --- Effect of Base Pairing --- p.100 / Chapter 5-3-5 --- Effect of Base Stacking from the (n-1) and (n+1) Base --- p.105 / Chapter 5-4 --- Conclusion --- p.105 / Chapter Chapter Six: --- Conclusion --- p.111 / Appendix A Product Operator Formalism on HMQC Pulse Scheme --- p.113 / Appendix B Finite Perturbation Theory --- p.115 / Appendix C Supplementary Figures of Chapter Four --- p.118 / Appendix D Some of the NMR Spectra --- p.134 / References --- p.140

Thesis. 1976. Ph.D.--Massachusetts Institute of Technology. Dept of Physics. / Microfiche copy available in Archives and Science. / Vita. / Includes bibliographies. / Ph.D.

A pesquisa bioquímica no campo da Metabolômica/Metabonômica tem se intensificado consideravelmente nos últimos anos, por sua capacidade de adquirir uma grande quantidade de informação a respeito do comportamento de um organismo através de seu metabolismo. Para isso, frequentemente faz uso da aplicação das mais diversas técnicas analíticas, como a Ressonância Magnética Nuclear. A Ivermectina é um fármaco de amplo uso no Brasil, dada a sua eficiência no controle de verminoses e pragas em gado (e humanos) e está aqui inserida no contexto metabolômico/metabonômico dadas as inúmeras violações ocorridas na carne brasileira exportada. A não observância dos períodos adequados de carência para abate dos animais tratados pode refletir seriamente na qualidade destes produtos. Assim, utilizou-se a Ivermectina como forma de provocar mudanças no metabolismo de bovinos e camundongos, procurando-se correlacionar as variações encontradas à dose aplicada. Através de ferramentas auxiliares, como RMN-2D e ferramentas quimiométricas exploratórias, fez-se a avaliação de amostras de plasma sanguíneo e urina bovinos, e plasma sanguíneo de camundongos Balb-C, após administração de Ivermectina. Os resultados obtidos mostram que a Ivermectina tem influência no balanço energético do organismo, interferindo nos níveis de lactato e β-hidróxibutirato, podendo estar ligada ao aparecimento de uma condição metabólica crítica em mamíferos, relacionada à alta concentração de corpos cetônicos na corrente sanguínea dos mesmos. / The biochemical research in the field of Metabolomics/ Metabonomics has grown considerably in recent years because its capability of acquiring a large amount of information about the behavior of an organism through its metabolism. For this, it often applies several analytical techniques such as Nuclear Magnetic Resonance. Ivermectin is a drug widely used in Brazil, for its effectiveness in controlling verminosis and pests in livestock (and humans) and is here inserted in the metabolomic/metabonomic context because of the numerous breaches occurred in brazilian beef exports. Failures to comply with the appropriate withdrawal periods for slaughtering treated animals may reflect seriously on the quality of these products. Thus, we used Ivermectin as a metabolism change inducer in cattle and mice, trying to correlate these variations to the applied dose. Through auxiliary tools such as 2D-NMR and chemometric exploratory tools, we evaluated samples of bovine blood plasma and urine, and blood plasma of Balb-C mice, after Ivermectin administration. The results show that Ivermectin has influence on the organism\'s energy balance, interfering with lactate and β-hydroxybutyrate which can be connected to the onset of a critical metabolic condition in mammals, related to the high concentration of ketone bodies in their blood stream.

The main aim of this thesis is to reveal the chemical structures of the solid-liquid interphase in lithium ion batteries by NMR spectroscopy in order to understand the working mechanism of electrolyte additives for achieving stable cycling performance. In the first part, a combination of solution and solid-state NMR techniques, including dynamic nuclear polarization (DNP) are employed to monitor the formation of the solid electrolyte interphase (SEI) on next-generation, high-capacity Si anodes in conventional carbonate electrolytes with and without fluoroethylene carbonate (FEC) additives. A model system of silicon nanowire (SiNW) electrode is used to avoid interference from the polymeric binder. To facilitate characterization via one- and two-dimensional NMR, ^13C-enriched FEC was synthesized and used, ultimately allowing a detailed structural assignment of the organic SEI. FEC is found to first defluorinated to form soluble vinylene carbonate (VC) and vinoxyl species, which react to form both soluble and insoluble branched ethylene-oxide-based polymers. In the second part, the same methodology is applied to study the decomposition products of pure FEC or VC electrolytes containing 1 M LiPF_6. The pure FEC/VC system simplifies the electrolyte solvent formulation and avoids the interaction between different solvent molecules. Polymeric SEIs formed in pure FEC or VC electrolytes consist mainly of cross-linked PEO and aliphatic chain functionalities along with additional carbonate and carboxylate species. The presence of cross-linked PEO-type polymers in FEC and VC correlates with good capacity retention and high Coulombic efficiencies of the SiNWs anode. Using ^29Si DNP NMR, the interfacial region between SEI and the Si surface was probed for the first time with NMR spectroscopy. Organosiloxanes form upon cycling, confirming that some of the organic SEI is covalently bonded to the Si surface. It is suggested that both the polymeric structure of the SEI and the nature of its adhesion to the redox-active materials are important for electrochemical performance. Finally, the soluble decomposition products of EC formed during electrochemical cycling have been thoroughly analyzed by solution NMR and mass spectrometry, in order to explain the capacity-fading of Si anodes in a conventional EC-based electrolyte and address questions that arose when studying the additive-containing electrolytes. The detailed structures for the EC-degradation products are determined: a linear oligomer consist of ethylene oxide and carbonate units is observed as the major degradation product of EC.

O estudo de soluções iônicas tem grande importância na química analítica. Na RMN, vários pesquisadores se dedicam ao entendimento do papel de íons paramagnéticos nos tempos de relaxação longitudinal (T1) e transversal (T2). A maioria dos trabalhos nesta área se dedicou ao estudo destas influências no T1, que é uma medida bem mais lenta do que a de T2. Assim, neste trabalho se estudou as implicações da relaxometria de T2 por RMN no domínio do tempo (RMN-DT) em soluções de íons paramagnéticos. A partir deste estudo, demonstrou-se a correlação linear entre a taxa de relaxação transversal (1/T2) e a concentração dos íons paramagnéticos. Com isso, usou-se esta metodologia na determinação de constantes do produto de solubilidade (Kps) dos hidróxidos Fe(OH)3, Cu(OH)2 e Mn(OH)2. A determinação da constante de solubilidade (Kps) tem grande importância e aplicação em química, principalmente na separação de íons por precipitação. Foi possível determinar com grande precisão o Kps destes hidróxidos utilizando a metodologia proposta, o que é promissor e encorajador para trabalhos futuros. Estudou-se também a eletrodeposição dos íons Fe3+, Cu2+ e Mn2+ in situ com a RMN-DT. A eletrodeposição tem número considerável de aplicações, tanto na pesquisa, quanto na indústria. E a possibilidade de se monitorar a retirada de íons metálicos sem que esta tenha de ser parada e, além disto, não precisando controlar a viscosidade da solução ou adicionar indicadores químicos é muito interessante. Para este estudo in situ, foram construídas e testadas duas células eletroquímicas, realizadas voltametrias cíclicas para estudo prévio e, finalmente, a eletrodeposição in situ da das soluções. O melhor resultado obtido foi para o Fe3+, seguido do Cu2+, não sendo possível observar a eletrodeposição do Mn2+. / The study of ionic solutions is of great importance to analytical chemistry. In NMR, a significant number of researchers devote themselves to the understanding of the role that paramagnetic ions have on longitudinal (T1) and transverse (T2) relaxation times. However, most of the papers published until today have studied this influences on T1, which is whatsoever more complicated to measure than T2. Therefore, we applied we applied the time domain NMR (TD-NMR) transverse relaxometry to study paramagnetic ions in aqueous solutions. The first application was the determination of the Fe(OH)3, Cu(OH)2 and Mn(OH)2 solubility product constants (Ksp). The knowledge of these constants is of industrial and academic interest. Moreover, Ksp is studied as a direct consequence of chemical equilibrium, which prejudices the acquisition of a deeper understanding to the problematic. Thus, use of TD-NMR to study Ksp is a new approach to the already done, with great teaching potential. It was possible to almost precisely determine the Ksp hydroxide values through the proposed methodology, which is promising and encouraging to future studies. It was also explored Fe3+, Cu2+ and Mn2+ electrochemical-NMR in situ experiments. Electrodeposition has a considerable number of applications in research as in industry. And the possibility to monitor the withdrawn of paramagnetic ions from the solution without ceasing the reaction and without the worry of solution viscosity or the need to add chemical indicator is really interesting. To the in situ study two electrochemical cells were built and tested, cyclic voltammetry and amperometric deposition were made. The best result was for iron, followed by copper. Manganese electrodeposition wasn\'t observed.

The purpose of this thesis was two fold: (i) The synthesis and characterization of SF5 containing dienes. (ii) The characterization of hydro/fluorocarbon compounds containing SF5/S02F groups via their 13C NMR spectra. A new SF5CH2CHBrCH2CF=CF2 was prepared and characterized as a precursor to new dielectric polymers. This new adduct was made from the reaction of pentafluorothio bromide with l,l,2-trifluoro-1,4-pentadiene. A SF5-diene was prepared from the reaction of pentafluorothio chloride with acetylene. This reaction involves a radical addition mechanism. The SF5 group is bonded to the carbon atom carrying the most hydrogens. SF5 - dienes are capable of undergoing different reactions, such as polymerization. Fluorocarbon sulfonyl fluorides (RS02F), which have been synthesized in our lab, were characterized by their 13C NMR spectra. The 13C NMR data of these sulfonyl fluorides show chemical shift values for the methyl and methylene groups next to a fluoroalkyl sulfonyl fluoride group in the 52.8-65.7 ppm range. The spectra showed that the inductive effect of electronegative substituents has a major influence on the 1Jc-F and 1Jc-H coupling. Infrared, 1H, 19F and 13C nuclear magnetic resonance and mass spectra are presented to support the assigned structure for the new compounds, SF5CH=CHCH=CHC1 and SF5CH2CHBrCH2CF=CF2.

The behavior of surfactants in solution has been and still is of scientific, technological, and industrial interest. The micelle forming compounds sodium N( octyloxycarbonyl)sarcosinate (NaOcSarc), and sodium N-(decyloxycarbonyl)sarcosinate (NaDecSarc) show in aqueous solution two lH NMR N-methyl peaks arising from a possible cis- or trans-conformation. The relative population of the N-methyl peaks depends mostly on the concentration of surfactant indicating micelle formation. Upon heating the two peaks start to coalesce and finally appear as one single peak . The temperature range in which this phenomenon occurs is from 25°C to 65°C. The primary interest of this study was to determine the activation parameters of rotation about the carbonyl-nitrogen (C-N) bond. Dynamic nuclear magnetic resonance spectroscopy was employed to approach this problem. A complete bandshape analysis was performed in order to calculate the free energy (G++), enthalpy (H++), and entropy (S++) of activation. The effect of a different counter ion (Li+) and sodium chloride salt addition were tested for possible changes of the activation parameters. Studies in nonaqeous solvents were conducted with the free acid form of the mentioned carbarnates. Dimethylsulfoxide and chloroform were chosen as organic solvents for these particular experiments. The critical micellar concentrations of all surfactants were determined, and the assignment of the individual N-methyl peaks to the correspondend conformation could be unambiguously shown by a two dimensional NMR experiment. The cmc's show strong salt dependence. The effect of a lithium as an alternative counter ion has a less drastic effect. Micellization seems not to occur in the free acid cases. Interestingly, the surfactants show stronger salt dependence than micellization dependence upon the activation parameters, indicating that solvent exposure occurs at the C-N partial double bond and considerable deformation of the ideal spherical shape.