Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Biology; and the Woods Hole Oceanographic Institution), 2012. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Despite widespread concerns about the effects of anthropogenic noise on baleen whales (suborder Mysticeti), we lack basic information about their auditory physiology for comprehensive risk assessments. Hearing ranges and sensitivities could be measured if customized equipment and methods were developed based on how baleen whales receive sound. However, sound reception pathways in baleen whales are currently unknown. This thesis presents an integrative approach to understanding hearing in baleen whales through dissections, biomedical imaging, biochemical analyses, and modeling sound propagation through a whale head using the Finite Element Method (FEM). We focused on the minke whale (Balaenoptera acutorostrata) because it is one of the smallest and most abundant mysticete species, reducing logistical difficulties for dissections and experiments. We discovered a large, well-formed fat body extending from the blubber region to the ears and contacting the ossicles. Although odontocetes, or toothed whales, are thought to use specialized "acoustic fats" for sound reception, no such tissues had been described for mysticetes to date. Our study indicates that the basic morphology and biochemical composition of the minke whale "ear fats" are very different from those of odontocete acoustic fats. However, the odontocete and mysticete fatty tissues share some characteristics, such as being conserved even during starvation, containing fewer dietary signals compared to blubber, and having well-defined attachments to the tympano-periotic complex, which houses the middle and inner ears. FE models of the whale head indicated that the ear fats caused a slight increase in the total pressure magnitude by the ears, and this focusing effect could be attributed to the low density and low sound speed of the ear fats in the models. Fatty tissues are known to have lower densities and sound speeds than other types of soft tissues, which may explain why they are an important component of the auditory system of odontocetes, and perhaps mysticete cetaceans as well. In an aquatic habitat where the pinna and air-filled ear canal are no longer effective at collecting and focusing so'und towards the ears, we propose that both odontocete and mysticete cetaceans have incorporated fatty tissues into their auditory systems for underwater sound reception. / by Maya Yamato. / Ph.D.

Thesis (M. Eng. in Ocean Engineering)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 1999. / Includes bibliographical references (leaves 97-103). / by Rachel H. Levine. / M.Eng.in Ocean Engineering

Thesis: S.M., Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2015. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 63-66). / Denmark Strait Overflow Water (DSOW) constitutes the densest portion of North Atlantic Deep Water, which feeds the lower limb of the Atlantic Meridional Overturning Circulation (AMOC). As such, it is critical to understand how DSOW is transferred from the upstream basins in the Nordic Seas, across the Greenland-Scotland Ridge, and to the North Atlantic Ocean. The goal of this study is to characterize the hydrographic structure of the different DSOW constituents at the sill before the water descends into the Irminger Sea using temperature and salinity (T/S) data from 111 shipboard crossings in the vicinity of the sill, collected between 1990 and 2012. The individual realizations indicate that weakly stratified "boluses" of DSOW frequent the sill and contribute the densest water to the overflow. This study also characterizes the structure, size, and location of the boluses and relates them to the T/S modes found at the sill. Lastly, historical hydrographic data from the Nordic Seas are used to make inferences regarding the origin of the boluses. / by Dana M. Mastropole. / S.M.

Thesis (S.M.)--Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2007. / Includes bibliographical references (p. 81-85). / Harmful algal blooms (HABs) of A. fundyense, more commonly known as "red tides", are a serious economic and public health concern in the Gulf of Maine. Until recently, there was very little known about the mechanisms regulating the observed spatial and temporal distributions of A. fundyense in this region. In the beginning of this work a review of previous research on A. fundyense and the mechanisms controlling their spatial and temporal distributions in the Gulf of Maine is presented. One of the major conclusions that can be drawn from previous work is that a thorough understanding of the interactions between river plumes is essential to our understanding of this problem. The rest of this thesis intends to contribute to the understanding of these plume interactions and their effect on the transport of A. fundyense. Mixing between two interacting river plumes with various buoyancies is investigated through laboratory experiments. These experiments indicate that under these idealized conditions, there was little mixing between the plumes after their initial interaction. A numerical model is used to explore the effects of river mouth size and flux variations on the interaction between two plumes. It is shown that based on river mouth geometry and flow rates the effect of the southern plume on the path of the northern plume can be predicted. In the final section a simple NP model is coupled with the physical model to explore the possible effects of river plume interaction on the distribution of A. fundyense. Based on our modeled results, it appears as if the southern river under certain conditions could temporarily act as a shield preventing A. fundyense from reaching the coast but that this was not a permanent state. / by Christie L. Wood / S.M.

Thesis: Ph. D., Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2016. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 125-134). / The Southern Ocean is one of the most energetic regions of the world ocean due to intense winds and storm forcing, strong currents in the form of the Antarctic Circumpolar Current (ACC) interacting with steep topography, and enhanced mesoscale activity. Consequently, the Southern Ocean is believed to be a hotspot for enhanced oceanic mixing. Due to the remote location and harsh conditions, few direct measurernents of turbulence have been collected in the Southern Ocean. Previous studies have used indirect methods based on finestructure observations to suggest that strong mixing is ubiquitous below the mixed layer. Results from a US/UK field program, however, showed that enhanced internal wave finestructure and turbulence levels are not widespread, but limited to frontal zones where strong bottom currents collide with steep,, large amplitude topography. This thesis studies the processes that support turbulence and mixing in the surface boundary layer and at intermediate depths in the Drake Passage region. Direct measurements of turbulence show that previous estimates of mixing rates in the upper 1km are biased high by up to two orders of magnitude. These biases are discussed in the context of the internal wave environment and enhanced thermohaline finestructure. The dissipation rate of thermal variance is enhanced in the upper 1000m, with the highest values found in northern Drake Passage where water mass variability is the most pronounced. Double diffusive processes and turbulence both contribute to buoyancy flux, elevating the effective mixing efficiency above the canonical value of 0.2 in the upper 1km. Despite the prevalence of energetic wind events, turbulence driven by downward propagating near-inertial wave shear is weak below the mixed layer. The results of this study inform large-scale modeling efforts through parameterizations of mixing processes in the highly undersampled Southern Ocean. / by Sophia Tiare Merrifield. / Ph. D.

Thesis: S.M., Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2016. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 97-99). / In this thesis, we have studied the existence of vortex steady states in a sinusoidal background shear flow in a 1.75 layer quasi-geostrophic model. Trying to find vortex structures by integrating the Hamiltonian system has the drawback that the vortices lose enstrophy by filamentation and numerical dissipation, while continuing to deform and wobble. Adopting the local optimization technique of Hamiltonian Dirac Simulated Annealing overcomes this drawback and allows us to obtain steady/quasi-steady vortices that have roughly the same area as that of the initial vortex. The steady states that we have generated range from elliptical with major axis aligned with the flow in the prograde shear region to triangular at the latitude where prograde and adverse shear meet and back to elliptical but with the major axis aligned perpendicular to the shear flow at the center of the adverse shear region. The steady states calculated by the above technique can be used for further analysis and as an initial condition to study the merger of vortices in background shear. This result is directly applicable to the kind of dynamics visible on planets like Jupiter, where vortices residing in zonal shear are a common occurrence. / by Rohith Vilasur Swaminathan. / S.M.

Thesis: Ph. D., Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2018. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 259-268). / This work investigates how a Lagrangian perspective applies to models of two oceanographic flows: an overturning submesoscale eddy and the Western Alboran Gyre. In the first case, I focus on the importance of diffusion as compared to chaotic advection for tracers in this system. Three methods are used to quantify the relative contributions: scaling arguments including a Lagrangian Batchelor scale, statistical analysis of ensembles of trajectories, and Nakamura effective diffusivity from numerical simulations of dye release. Through these complementary methods, I find that chaotic advection dominates over turbulent diffusion in the widest chaotic regions, which always occur near the center and outer rim of the cylinder and sometimes occur in interior regions for Ekman numbers near 0.01. In thin chaotic regions, diffusion is at least as important as chaotic advection. From this analysis, it is clear that identified Lagrangian coherent structures will be barriers to transport for long times if they are much larger than the Batchelor scale. The second case is a model of the Western Alboran Gyre with realistic forcing and bathymetry. I examine its transport properties from both an Eulerian and Lagrangian perspective. I find that advection is most often the dominant term in Eulerian budgets for volume, salt, and heat in the gyre, with diffusion and surface fluxes playing a smaller role. In the vorticity budget, advection is as large as the effects of wind and viscous diffusion, but not dominant. For the Lagrangian analysis, I construct a moving gyre boundary from segments of the stable and unstable manifolds emanating from two persistent hyperbolic trajectories on the coast at the eastern and western extent of the gyre. These manifolds are computed on several isopycnals and stacked vertically to construct a three-dimensional Lagrangian gyre boundary. The regions these manifolds cover is the stirring region, where there is a path for water to reach the gyre. On timescales of days to weeks, water from the Atlantic Jet and the northern coast can enter the outer parts of the gyre, but there is a core region in the interior that is separate. Using a gate, I calculate the continuous advective transport across the Lagrangian boundary in three dimensions for the first time. A Lagrangian volume budget is calculated, and challenges in its closure are described. Lagrangian and Eulerian advective transports are found to be of similar magnitudes. / by Genevieve Elizabeth Brett. / Ph. D.

Thesis: S.M., Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2016 / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 119-123). / Most traditional theories regarding upper oceanic response due to passing tropical cyclones involve an initial and predominant upwelling based on storms' strong cyclonic flow and resulting positive wind stress curl imparted on the sea surface. In August 2015, Air-Launched Autonomous Micro Observer float 9077 was intercepted by Hurricane Ignacio and its temperature measurements revealed a 40 m depression of the 26°C isotherm ahead of the device's closest point of approach with the storm and usual upwelling response. This unique finding motivated attempting to replicate the apparent downwelling ahead of Hurricane Ignacio and three others-Irma, Florence and Michael, using the Price-Weller-Pinkel 1/2 order closure model, via comparisons of the depth of the 26°C isotherm, tropical cyclone heat potential and vertical velocity. When modeling the total stress, two other traditional ideas were challenged. / First, many legacy drag coefficients linearly increase with wind speed, while the modem variety maximize near tropical cyclone strength, with varying asymptotic and/or decreasing end behavior. Second, it is believed that sea spray droplets are sheared off the largest wave crests, quickly accelerate in the high winds, but upon reentry, dampen the smaller waves and flux substantial amounts of momentum to the sea. Taken together, many traditional atmosphere-ocean models bulk parameterize air-sea interaction processes and employ a legacy drag coefficient and omit or crudely formulate sea spray. Therefore, this study aimed to simulate the aforementioned downwelling using 14 total forcing parameterizations, including seven different legacy or modem drag coefficients, with and without spray stress. / A combination of qualitative and statistical analyses illustrated downwelling was present in Hurricane Ignacio and every other storm by a large majority of variable indices, legacy drag coefficients were statistically significantly over-estimating outliers and should not be employed in tropical cyclone models, and while the explicit addition of sea spray to interfacial stress reduced model accuracy, this phenomenon remains paramount through modem drag coefficient selection. The confirmation of downwelling is physically founded in Ekman dynamics and may be significant in storm surge enhancement due to the accompanying surface height anomaly and near-shore depth limitations forcing water, with a negative vertical velocity, ashore. / Office of Naval ResearchN00014-15-12293 / Office of Naval ResearcN00014-18-12819 / U. S. Navy Civilian Institution Program / by Stephan D. Gallagher. / S.M. / S.M. Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)

Thesis: S.M., Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2020 / Cataloged from student-submitted PDF of thesis. / Includes bibliographical references (pages 91-94). / The Atlantic Water (AW) Layer in the Arctic Subpolar gyre sTate Estimate (ASTE), a regional, medium-resolution coupled ocean-sea ice state estimate, is analyzed for the first time using bounding isopycnals. A surge of AW, marked by rapid increases in mean AW Layer potential temperature and AW Layer thickness, begins two years into the state estimate (2004) and traverses the Arctic Ocean along boundary current pathways at approximately 2 cm/s. The surge also alters AW flow direction and speed including a significant reversal in flow direction along the Lomonosov Ridge. The surge results in a new quasi-steady AW flow from 2010 through the end of the state estimate period in 2017. The time-mean AW circulation during this time period indicates a significant amount of AW spreads over the Lomonosov Ridge rather than directly returning along the ridge to Fram Strait. A three-layer depiction of ASTE's overturning circulation within the AO indicates AW is converted to colder, fresher Surface Layer water at a faster rate than is transformed to Bottom Water (1.2 Sv vs. 0.4 Sv). Observed AW properties compared to ASTE output indicate increasing misfit during the simulated period with ASTE's AW Layer generally being warmer and thicker than in observations. / by Jeffrey Scott Grabon. / S.M. / S.M. Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)

Thesis (Ph. D.)--Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Science; and the Woods Hole Oceanographic Institution), 2002. / Includes bibliographical references (p. 134-138). / A numerical model of the tropical Atlantic ocean is used to investigate the upper layer pathways of the Meridional Overturning Circulation (MOC) in the tropical Atlantic. The main focus of this thesis is on those parts of the tropical circulation that are thought to be important for the MOC return flow, but whose dynamics have not been understood yet. It is shown how the particular structure of the tropical gyre and the MOC act to inhibit the flow of North Atlantic water into the equatorial thermocline. As a result, the upper layers of the tropical Atlantic are mainly fed by water from the South Atlantic. The processes that carry the South Atlantic water across the tropical Atlantic into the North Atlantic as part of the MOC are described here, and three processes that were hitherto not understood are explained as follows: The North Brazil Current rings are created as the result of the reflection of Rossby waves at the South American coast. These Rossby waves are generated by the barotropically unstable North Equatorial Countercurrent. The deep structure of the rings can be explained by merger of the wave's anticyclones with the deeper intermediate eddies that are generated as the intermediate western boundary current crosses the equator. The bands of strong zonal velocity in intermediate depths along the equator have hitherto been explained as intermediate currents. Here, an alternative interpretation of the observations is offered: The Eulerian mean flow along the equator is negligible and the observations are the signature of strong seasonal Rossby waves. The previous interpretation of the observations can then be explained as aliasing of the tropical wave field. / (cont.) The Tsuchyia Jets are driven by the Eliassen-Palm flux of the tropical instability waves. The equatorial current system with its strong shears is unstable and generates tropical instability waves. These waves cause a poleward temperature flux which steepens the isotherms which in turn generates are geostrophically balanced zonal flow. In the eastern part of the basin this zonal flow feeds the southeastward flow of the equatorial gyre. / by Markus Jochum. / Ph.D.