The Janzen-Connell mechanism is proposed to maintain plant diversity: predators and diseases of seeds reduce the number of seeds that survive near a parent tree, but allow seeds far from the parent tree to grow into adulthood. In the area where seeds don’t survive, seedlings from other tree species which are not affected by the seed consumer can grow. At large scales, this effect is thought to increase overall plant diversity. Soil-borne pathogens can contribute to seed mortality in this way, but we don’t know how important different parts of their lifecycle are in creating Janzen-Connell patterns. To determine the role of soil-borne pathogens in the development of Janzen-Connell patterns, we constructed a simulation model to examine how tree and pathogen characteristics affect plant spatial patterns. Under specific combinations of tree and pathogen characteristics, we found that pathogens could create Janzen-Connell patterns. The most important parameters were how far trees dispersed their seeds, and how many seeds a tree produced in a year. These characteristics determined how much of an impact the pathogens were able to have on the tree population because they rely on the density of seeds to determine how far they can spread and how many spores they will produce.