published_or_final_version / Environmental Management / Master / Master of Science in Environmental Management

Thesis (M. Phil.)--University of Hong Kong, 1998. / Includes bibliographical references (leaves 115-120).

We applied culture-independent, next-generation sequencing (NGS) high throughput pyrosequencing, to characterize the microbial communities associated with near shore seawater in Broward County, FL. These waters flow over coral reef communities, which are part of the Florida reef tract, and are close to shore where bathers frequent. Through a close partnership with the NOAA FACE program, 38 total seawater samples were taken from 6 distinct locales -the Port Everglades and Hillsboro Inlets, Hollywood and Broward wastewater outfalls, and the associated reef waters-over the course of one year. Tagged 16S rRNA amplicons were used to generate longitudinal taxonomic profiles of marine bacteria and archaea for one year. 236,322 rRNA quality checked sequences with an average length of 250 base pairs were generated. Sequences were found to vary significantly due to seasonal effects, but depth showed no significant correlation. The most abundant taxa among these samples included Synechococcus, Pelagibacteraceae (SAR11), Bacteroidetes, various Proteobacteria, and Archaea, such as Thermoplasmata. Other taxa found, albeit in low numbers, were the Thiotrichales, and some members of which can indicate pollution, the Alteromonadales, a biofilm forming order. Inlet sequences were found to be significantly different from the outfall and reef communities by various analyses. Unifrac analysis of microbial beta diversity showed a significant clustering pattern for the inlet samples. Precipitation during the three days before and after sampling was low meaning there was little to no high terrestrial runoff during the sampling days. Higher levels of turbidity were seen at the inlet sites and significantly affected the growth of surface colonizing and biofilm forming bacterial families such at the Rhodobacteraceae and Flavobacteriaceae. This study represents one of the first to apply NGS analyses for a deep analysis of microbial community dynamics in these S. Florida waters.

published_or_final_version / Environmental Management / Master / Master of Science in Environmental Management

Thesis (Ph. D.)--Joint Program in Marine Geology and Geophysics (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), September 2003. / Includes bibliographical references.

Thesis (Ph. D.)--Joint Program in Marine Geology and Geophysics (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), September 2003. / Includes bibliographical references. / Groundwater discharge into estuaries and the coastal ocean is an important mechanism for the transport of dissolved chemical species to coastal waters. Because many dissolved species are present in groundwater in concentrations that are orders of magnitude higher than typical river concentrations, groundwater-borne nutrients and pollutants can have a substantial impact on the chemistry and biology of estuaries and the coastal ocean. However, direct fluxes of groundwater into the coastal ocean (submarine groundwater discharge, or SGD) can be difficult to quantify. Geochemical tracers of groundwater discharge can reflect the cumulative SGD flux from numerous small, widely dispersed, and perhaps ephemeral sources such as springs, seeps, and diffuse discharge. The natural radiocarbon content (A14C) of dissolved inorganic carbon (DIC) was developed as a tracer of fresh, terrestrially driven fluxes from confined aquifers. This A14C method was tested during five sampling periods from November 1999 to April 2002 in two small estuaries in southeastern North Carolina. In coastal North Carolina, fresh water artesian discharge is characterized by a low A14C signature acquired from the carbonate aquifer rock. Mixing models were used to evaluate the inputs from potential sources of DIC-A'4C to each estuary, including seawater, springs, fresh water stream inputs, and salt marsh respiration DIC additions. These calculations showed that artesian discharge dominated the total fresh water input to these estuaries during nearly all sampling periods. / (cont.) These new A14C-based SGD estimates were compared with groundwater flux estimates derived from radium isotopes and from radon-222. It is clear that these tracers reflect different components of the total SGD. The fluxes of low-A14C and of 222Rn were dominated by artesian discharge. Estuarine 226Ra showed strong artesian influence, but also reflected the salt water SGD processes that controlled the other three radium isotopes. The flux of 228Ra seemed to reflect seepage from the terrestrial surficial aquifer as well as salt water recirculation through estuarine sediments. The fluxes of 224Ra and 223Ra were dominated by salt water recirculation through salt marsh sediments. This multi-tracer approach provides a comprehensive assessment of the various components contributing to the total SGD. / by Carolyn M. Gramling. / Ph.D.