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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Characterization of Fosfomycin-Resistant MurA from Borrelia burgdorferi, Fragment-based Inhibitor Design for AroA and DAHP Synthase

Jiang, Shan 10 1900 (has links)
<p>MurA catalyzes the first committed step of peptidoglycan biosynthesis and it is the target of the antibiotic fosfomycin. Due to a Cys-to-Asp substitution in the active site, MurAs from a number of pathogenic bacteria, including <em>Mycobacterium tuberculosis</em> and <em>Borrelia burgdorferi</em> (Lyme disease), are fosfomycin resistant. His-tagged <em>Borrelia burgdorferi</em> MurA (Bb_MurA) and its D116C mutant have been successfully expressed, purified and characterized. The <em>k</em><sub>cat</sub> value of wild-type Bb_MurA was 0.74 ± 0.01 s<sup>-1</sup>. The D116C mutant’s <em>k</em><sub>cat</sub> decreased by 25-fold and was fosfomycin sensitive. The pH profiles of <em>k</em><sub>cat</sub> for both Bb_MurA and its mutant were characterized. There was little difference in p<em>K</em><sub>a1</sub> values, but the p<em>K</em><sub>a2</sub> value shifted from 7.4 ± 0.2 in wild-type enzyme to a value >11 in the mutant. This demonstrated that the p<em>K</em><sub>a2</sub> of 7.4 was due to D116, and that it must be protonated for activity. Fosfomycin inactivation of Bb_MurA<sub>H6</sub>(D116C) was time-dependent and only proceeded in the presence of UDP-GlcNAc. The dissociation constant, <em>K</em><sub>i</sub>, was 5.7 ± 0.4 µM and rate of covalent modification, <em>k</em><sub>inact</sub>, was 0.021 ± 0.003 s<sup>-1</sup>.</p> <p>DAHP synthase catalyzes the first committed step in the shikimate pathway, and its catalysis has been proposed to proceed through two oxacarbenium ion intermediates. Pyruvate oxime, glyoxylate oxime and 4-imidazolecarboxylic acid have been evaluated as inhibitors of DAHP synthase. In the presence of glycerol 3-phosphate, the fitted <em>K</em><sub>i</sub> values of pyruvate oxime and glyoxylate oxime were 7.6 (± 0.9) × 10<sup>-5</sup> M and 7.4 (± 1.7) × 10<sup>-5</sup> M, respectively. 4-Imidazolecarboxylic acid’s inhibition was cooperative, and its binding was competitive with respect to PEP, and uncompetitive with respect to E4P. Its equilibrium dissociation constant was 3.0 (± 0.2) × 10<sup>-3</sup> M.</p> / Master of Science (MSc)

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