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Small molecule libraries have become essential for the development of drug discovery campaigns and chemical genetics. The studies towards the synthesis of a small molecule library, based upon the cis-ring fused phenanthridine core I, will be described. The first section of this thesis examines the development and application of a novel intramolecular Heck cyclisation to the synthesis of core phenanthridine structure II, via precursor III (Chapter 2).The second section (Chapter 3) describes the extension of this methodology towards the development of a library of phenanthridines IV. This includes methodology designed to incorporate the key principles of diversity-oriented synthesis, namely appendage, stereochemical and skeletal diversity. The final part of this thesis (Chapter 4) describes the merging of these various methodologies to generate a small library of novel phenanthridine analogues. Preliminary biological evaluation of the phenanthridine library using whole organism zebrafish phenotyping, will also be discussed.

In this project cyclisation chemistry using palladium and radical methodologies has been developed. The aim was to compare palladium and radical mediated cyclisations. Initially small molecules containing amine and amide functional groups were synthesised to screen the methodology. Later the design of these molecules was changed to be based on the imidoyl functional group. A series of N-benzyl protected aliphatic amine and amides were synthesised in the hope (with the aim of cyclisation) that they could be cyclised using both palladium and radical conditions. When these examples failed, which was attributed to the strain of the cyclic molecules, alternative precursors were sought. Initially, the N-protecting group was changed to a tosyl-group. However, when this had no positive effect, the size of the precursor molecules were examined. Two alternative amine precursors were designed which would remove the strain element in the cyclised molecules. The lengthy synthesis of these two molecules was not favourable for the development of methodology. Although it appeared that the cyclisations were now occurring it did not prove favourable to carry on down this path. The final part of this research project utilises imines and imidoyl selenides as radical and palladium cyclisation precursors respectively. A series of aromatic imines and imidoyl selenides were synthesised. The irnines were synthesised from amino-biphenyl and a range of p-substituted benza1dehydes. The corresponding imidoyl selenides were synthesised from amino-biphenyl and a range of p-substituted benzoyl chlorides to give the amides which in tum were converted to the target molecules via the imidoyl chlorides. The successful cyclisations using both methodologies resulted in a series of phenanthridines. This success of these cyclisations led to further precursors being developed which included bisphenanthridine, alkyne, alkyl and heteroaromatic precursors. However, most of the cyclisations of these molecules proved problematic and require further development of methodology.

Chapter 1: Reaction of benzoaldehyde with wittig agents or isophone to build up conjugate carbon chain, then combined with electron acceptor to furnished the chromophores. The charge-transfer chromophores, which have the first molecular hyperpolarizability

Doctor of Philosophy / Department of Chemistry / Sundeep Rayat / Research in our laboratory has focused on designing photoactivated DNA cleaving agents based on tetrazolethione scaffolds. The key step in the activation of these involves conversion of tetrazolethione moiety to carbodiimides upon irradiation. However, the mechanism of this reaction was not previously reported. Therefore, we undertook a study to elucidate the mechanism of photodecomposition of tetrazolethione as to identify reactive intermediates involved, that may interfere or aid with the activity of our synthesized DNA cleaving agents under physiological conditions. In Part 1 of this dissertation, we present mechanistic studies on this photodecomposition. Our results indicate the clean photoconversion of tetrazolethiones I to their respective carbodiimides IV via the expulsion of sulfur and dinitrogen. Photoirradiation in the presence of trapping agent (e.g. 1,4-cyclohexadiene) resulted into the formation of their corresponding thioureas. Thus, providing strong evidence for the intermediacy of a 1,3-biradical III, which is believed to be in its triplet spin multiplicity. Further investigations (triplet sensitization and quenching experiments) to determine the precursor of the biradical argued against the involvement of a triplet excited state (T[subscript]1). We believe that the mechanistic pathway that leads to the formation of a 1,3-triplet biradical III is a diradicaloid species II-II" generated directly from the singlet excited state of tetrazolethiones (S[subscript]1) after the expulsion of dinitrogen. Once formed, this diradicaloid species could be envisioned to undergo intersystem crossing to generate the 1,3 triplet biradical III which then undergoes desulfurization to form carbodiimides IV (Chapter 2). Bridgehead-nitrogen containing fused heterocycles are regarded as “privileged structure” in biology and have found widespread applications in pharmaceutical industry. These heterocycles have also been evaluated in electroluminescent devices and organic dyes. Part II of the dissertation present new, concise and low cost strategies to a unique class of bridgehead nitrogen-containing fused heterocyclic scaffolds which involves two sequential intramolecular cyclizations from heteroenyne-allenes in the presence of Lewis acids such as SnCl[subscript]4 and BF[subscript]3.OEt[subscript]2, and trace water. The starting heteroenyne-allenes VI can be prepared from commercially available substrates V in 4 – 5 steps following standard protocols (Chapter 3). Furthermore, we employed density functional theory to gain insights into the optoelectronic properties of select derivatives of phenanthridine-fused quinazoliniminiums (PNQs) VII and their free base in order to evaluate their scope in OLED technology. Our results show that the energies of the Highest Occupied Molecular Orbital (HOMO), Lowest Unoccupied Molecular Orbital (LUMO), the HOMO-LUMO energy gaps, the ionization potentials, electron affinities and the reorganization energies can be finely tuned by varying the substituents on these chromophores. In addition, we found that the introduction of an electron donating group (NMe[subscript]2) on the PNQs and their free base increases the energies of the HOMOs and decreases the ionization potentials, relative to its unsubstituted derivative, whereas substitution by an electron withdrawing group (NO[subscript]2) decreases the energies of the LUMOs and increases the electron affinities which in turn suggests an improvement in their hole and electron creating abilities, respectively (Chapter 4).