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The dependency of maize (Zea mays L.) and bambara groundnut (Vigna subterranea) grown in acid tropical soils, on the mycorrhizal condition for improved growth and nutrient uptake, and the effects of various management practices on root infection by vesicular-arbuscular mycorrhizal fungi in maize plants were investigated. The effect of soil pH on mycorrhiza formation in perennial ryegrass and maize was also investigated using a temperate soil in which pH levels had been maintained in the field over a long period. Infection of roots of maize and bambara groundnut plants by vesicular-arbuscular mycorrhizal (VAM) fungi indigenous to the tropical soils, resulted in increased plant dry weights as well as increased uptake of nutrients. The population of VAM fungi in the soils consisted of several species in the genera Glomus and Gigaspora. The foliar application of two systemic fungicides (Triforine and calixin) to maize plants resulted in reduced infection with the application of calixin compared to control plants. Root infection by VAM fungi was not different from that of control plants when triforine was applied. Two phosphorus sources (triple superphosphate and Ghafsa phosphate rock) applied to soils at rates equivalent to 22kg ha-1 and 44kg ha-1 had varied effects on VAM fungal infection in maize roots. Phosphate rock applied at both rates and triple superphosphate applied at the lower rate (22kg ha -1) increased root infection compared to that for triple superphosphate at the higher rate. It was suggested that the increased availability of the relatively soluble triple superphosphate was responsible for the reduced infection. The effect of lime application on VAM fungal infection was dependent on the type of phosphorus fertilizer applied to the soils. Increased root infection occurred when lime was applied in addition to triple superphosphate in comparison to phosphate rock. Without lime application, increased infection occurred when phosphate rock was applied compared to triple superphosphate. In the temperate soil with pH maintained over a long period, no VAM fungal infection was found at pH values below 5.0 when ryegrass was the host, although infection occurred when maize was the host plant. There was an effect of host plant on the infectivity of the fungi present in the soils with low pH but infection was low in comparison with that in soil at pH values above 5.0 indicating that management practices which result in soil pH changes may influence mycorrhizal associations in different plant species to different extents. The application of phosphate rock was beneficial to mycorrhiza formation and it was suggested that fertilizer practices which involve the use of phosphate rock could confer additional benefits that can be derived from increased mycorrhiza formation.

abstract: Analytical solution of the pressure field for water uptake through a composite root, coupled with fully saturated soil is derived by using the slender body approximation. It is shown that in general, the resistance of the root and soil are not additive. This result can play a very important role in modelling water uptake through plant roots and determination of hydraulic resistances of plant roots. Optimum plant root structure that minimizes a single root’s hydraulic resistance is also studied in this work with the constraint of prescribed root volume. Hydraulic resistances under the slender body approximation and without such a limitation are considered. It is found that for large stele-to-cortex permeability ratio, there exists an optimum root length-to-base-radius ratio that minimizes the hydraulic resistance. A remarkable feature of the optimum root structure is that the optimum dimensionless stele conductivity depends only on a single geometrical parameter, the stele-to-root base-radius ratio. Once the stele-to-root base-radius ratio and the stele-to-cortex permeability ratio are given, the optimum root length-to-radius ratio can be found. While these findings remain to be verified by experiments for real plant roots, they offer theoretical guidance for the design of bio-inspired structures that minimizes hydraulic resistance for fluid production from porous media. / Dissertation/Thesis / Masters Thesis Mechanical Engineering 2016

Phytoremediation systems for petroleum hydrocarbons rely on a synergistic relationship between plants and their root-associated microbial communities. Plants exude organic compounds through their roots, which increase the density, diversity and activity of plant-associated microorganisms, which in turn degrade hydrocarbons. Understanding the mechanisms driving this relationship poses one of the more intriguing challenges in phytoremediation research. This study was designed to address that challenge. Plant-microbe interactions in a weathered-hydrocarbon contaminated soil were examined under controlled growth chamber, and field conditions. In both environments single-species grass treatments initially facilitated greater total petroleum hydrocarbon (TPH) degradation than <i> Medicago sativa </i> (alfalfa), mixed species, or control treatments. In growth chamber studies increased degradation was linked to increased aliphatic-hydrocarbon degrader populations within the rhizosphere. Under field conditions, specific recruitment of endophytic aliphatic-hydrocarbon degraders in response to high TPH levels may have facilitated increased degradation by the grass <i> Elymus angustus</i>(Altai wild rye, AWR). AWR stably maintained these communities during times of local drought, enabling them to act as subsequent source populations for rhizosphere communities. The broad phylogenetic diversity of AWR endophytes, compared to the <i> Pseudomonas</i>-dominated communities of other plants, contributed to the observed stability. The relative composition of exudates released by plants also impacted both degradation activity and potential. Alfalfa released higher concentrations of malonate, which hindered degradation by decreasing metabolic activity and concomitantly inhibiting catabolic plasmid transfer. In contrast, AWR exudates contained high levels of succinate, which was linked to increased catabolic gene expression and plasmid transfer. A reciprocal relationship between exudation patterns and endophytic community structure likely exists, and both parameters have a specific influence on rhizosphere degradation capacity. In this study, grasses were more successful in maintaining the specific balance of all parameters required for the transfer, preservation, and stimulation of hydrocarbon catabolic competency.

Phytoremediation systems for petroleum hydrocarbons rely on a synergistic relationship between plants and their root-associated microbial communities. Plants exude organic compounds through their roots, which increase the density, diversity and activity of plant-associated microorganisms, which in turn degrade hydrocarbons. Understanding the mechanisms driving this relationship poses one of the more intriguing challenges in phytoremediation research. This study was designed to address that challenge. Plant-microbe interactions in a weathered-hydrocarbon contaminated soil were examined under controlled growth chamber, and field conditions. In both environments single-species grass treatments initially facilitated greater total petroleum hydrocarbon (TPH) degradation than <i> Medicago sativa </i> (alfalfa), mixed species, or control treatments. In growth chamber studies increased degradation was linked to increased aliphatic-hydrocarbon degrader populations within the rhizosphere. Under field conditions, specific recruitment of endophytic aliphatic-hydrocarbon degraders in response to high TPH levels may have facilitated increased degradation by the grass <i> Elymus angustus</i>(Altai wild rye, AWR). AWR stably maintained these communities during times of local drought, enabling them to act as subsequent source populations for rhizosphere communities. The broad phylogenetic diversity of AWR endophytes, compared to the <i> Pseudomonas</i>-dominated communities of other plants, contributed to the observed stability. The relative composition of exudates released by plants also impacted both degradation activity and potential. Alfalfa released higher concentrations of malonate, which hindered degradation by decreasing metabolic activity and concomitantly inhibiting catabolic plasmid transfer. In contrast, AWR exudates contained high levels of succinate, which was linked to increased catabolic gene expression and plasmid transfer. A reciprocal relationship between exudation patterns and endophytic community structure likely exists, and both parameters have a specific influence on rhizosphere degradation capacity. In this study, grasses were more successful in maintaining the specific balance of all parameters required for the transfer, preservation, and stimulation of hydrocarbon catabolic competency.

Drought causes considerable reduction of legume productivity and significantly threatens the food security, and this situation is expected to be aggravated due to climate change. In soybean and common bean, water resource capturing through plant root architectural plasticity and the role of symbiotic nitrogen fixation have not been investigated in greater detail yet. This study was therefore conducted to identify and apply useful morphological and physiological performance markers (traits) for selection of drought-tolerant common bean and soybean cultivars under both controlled phytotron and field conditions that might be applicable as markers in future legume breeding programs. In soybean, traits related to above ground performance, such as photosynthesis, biomasses, and stomatal conductance, were related to parameters for nitrogen acquisition in nodules. The ability to maintain vigorous shoot growth under drought-induced nitrogen limitation was identified as an important trait that can be used to select for improved drought tolerance. Further, experiments carried out growing different common bean inbred lines under controlled phytotron conditions revealed the importance of growth and gas exchange parameters as well as nitrogen fixing ability as performance markers to select superior performing bean lines for growth under drought. As a further result, the strong association of symbiotic nitrogen fixation with CO2 assimilation and stomatal conductance was also ascertained. In field experiments the effective use of water through enhanced lateral root development and maintaining the water status of the plant was found to be crucial for enhanced productivity under drought, with root morphology traits (root length, area and volume) as well as root architectural traits (first whorl angle, basal root number and adventitious root branching density) significantly related to seed yield. Measurement of these traits might be added to future bean varietal improvement programs. Further, a direct relationship between both water use efficiency (WUE) estimated using carbon isotope discrimination (CID) and nitrogen fixation (15N abundance) with root morphological and architectural traits (root length, area and volume, basal root number, 1st as well as 2nd whorl angles) was identified. CID (WUE) and 15N abundance (SNF ability) had a direct relationship with each other and also with productivity traits (seed yield and pod harvest index). Soybean field experiments verified the importance of root system architecture and morphology for providing drought tolerance with root architectural traits, tap and lateral roots (diameter and branching density) and morphological traits (root length, surface area and volume) contributing to better performance under drought. Moreover, the strong association of CID (WUE) with ä15N (SNF), root traits as well as seed yield in soybean exposed to drought was ascertained. Findings suggested that higher performance in CID under drought stress may be due to higher CO2 assimilation and better N2 fixation resulting in better root system architecture and morphology of the drought-tolerant cultivar through maintenance of the water status of the plant for efficient biological activity. Overall the study has generated new knowledge about the use of physiological markers (traits) that can be used widely for legume evaluation under drought suitable for both phytotron and field studies. / Thesis (PhD)--University of Pretoria, 2012. / Plant Science / unrestricted

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