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Halichoeres socialis Randall & Lobel, 2003, is the only wrasse species (Teleostei: Labridae) with a restricted distribution within the Caribbean Meso-American Barrier Reef (MABR), Central America. This study examined the early life history of H. socialis to gain insight into its natural history and to assess if any pattern in otolith microstructure could be linked to its endemism. The sagittal otoliths from 67 individuals (ranging 9.8–43.4mm SL) were analyzed to determine the daily age and increment profile. Results indicate that (1) H. socialis displays a typical “settlement mark”; (2) the pelagic larval duration (PLD) ranged from 22 to 32 (mean=27, n=59) days, which was similar to its congeners; and (3) the juvenile growth rate is 0.7mm/d, which was faster than most congeners. The endemism of H. socialis is not explained by its PLD. Alternatively, it is possible that larval behaviors (vertical migration and/or schooling) play a key factor in how H. socialis larvae are retained within the MABR region. / 2026-03-19T00:00:00Z

Submitted by Irene Nascimento (irene.kessia@ufpe.br) on 2016-10-11T18:18:10Z No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Versao atualizada Dissertação Camila Rodrigues da Silva.pdf: 4283237 bytes, checksum: b94bb3be2af7e3271536a1b017f891c6 (MD5) / Made available in DSpace on 2016-10-11T18:18:10Z (GMT). No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Versao atualizada Dissertação Camila Rodrigues da Silva.pdf: 4283237 bytes, checksum: b94bb3be2af7e3271536a1b017f891c6 (MD5) Previous issue date: 2011-05-27 / Cnpq / A idade e o crescimento do budiãoSparisomafrondosum capturado em Pernambuco, nordeste do Brasil, foram estimados utilizando 251 otólitos (121 machos e 130 fêmeas), observando-se 1 a 9 anéis em indivíduos de 13,1 a36,8 cm CT. A análise do incremento marginal nos otólitos indicou que a menor distância do último anel à borda ocorreu no mês de janeiro, sugerindo a formação de um anel a cada ano. Os parâmetros de crescimento foram estimados para os modelos de von Bertalanffy, Gompertz e Richards. O critério de informação de Akaike (AIC) foi utilizado para verificar qual modelo melhor se ajustava aos dados, demonstrando que a equação de crescimento de von Bertalanffy(L∞= 34,28 cm; K= 0,36; t0= - 0,17)para sexos agrupados foi o melhor modelo,descrevendo adequadamente o crescimento da espécie.A composição etária para a amostra total (n =251) indicou que 55% dos indivíduos estiveram concentrados entre 3 e 4 anos, com idade máxima de 9 anos. As fêmeas estiveram presentes em todas as classes etárias e os machos de 2 a 7 anos. As fêmeas maduras representaram 45% da composição das capturas, com idade de primeira maturação gonadal de 1,5 anos (17,62 cm CT), baseado na curva de crescimento estimada no presente estudo. A estrutura etária, os parâmetros de crescimento e o tamanho de primeira maturação gonadal estimados pela primeira vez para Sparisomafrondosum constituem contribuição essencial a planos de manejo devido a explotação dessaespécie hermafrodita protogínica cuja estratégia requer o alcance do tamanho mínimo para a reversão sexual. / Age and growth of parrotfish Sparisomafrondosum captured in Pernambuco, northeastern Brazil, were estimated using otoliths 251 (121 males and 130 females), looking up 1 to 9 rings in individuals from 13.1 to 36.8 cm CT. The analysis of marginal increase in otolith indicated that the shortest distance of the last ring on the edge occurred in January, suggesting the formation of a ring each year. Growth parameters were estimated for models of von Bertalanffy, Gompertz and Richards. The Akaike information criteria (AIC) was used to determine which model best fit the data, showing that the growth equation of von Bertalanffy (L∞ = 34.28 cm; K = 0.36; t0 = - 0, 17) for grouped sexes was the best model adequately describes the growth of the species. The age composition for the total sample (n = 251) indicated that 55% of individuals were concentrated between 3 and 4 years, with a maximum age of 9 years. The females were present in all age groups and males from 2 to 7 years. Mature females accounted for 45% of the catch composition, age of first sexual maturity of 1.5 years (17.62 cm CT) based on the growth curve estimated in this study. The age structure, growth parameters and the size of the first gonadal maturation estimated for the first time Sparisomafrondosum an essential contribution to management plans due to exploitation of this species hermaphrodite protogynous whose strategy requires the achievement of the minimum size for sex reversal.

As a region renowned for high biodiversity, endemism and extreme temperature and salinity levels, the Red Sea is of high ecological interest. Despite this, there is relatively little literature on basic broad scale characteristics of the biodiversity or overall reef fish communities and how they change across latitude. We conducted visual transects recording the abundance of over 200 species of fish from 45 reefs spanning over 1000 km of Saudi Arabian coastline and used hierarchical cluster analysis to find that for combined depths from 0m-10m across this geographical range, the reef fish communities are relatively similar. However we find some interesting patterns both at the community level across depth and latitude as well as in endemic community distributions. We find that the communities, much like the environmental factors, shift gradually along latitude but do not show distinct clusters within the range we surveyed (from Al-Wajh in the north to the Farasan Banks in the south). Numbers of endemic species tend to be higher in the Thuwal region and further south. This type of baseline data on reef fish distribution and possible factors that may influence their ranges in the Red Sea are critical for future scientific studies as well as effective monitoring and in the face of the persistent anthropogenic influences such as coastal development, overfishing and climate change.

The field of marine population connectivity is receiving growing attention from ecologists worldwide. The degree to which metapopulations are connected via larval dispersal has vital ramifications for demographic and evolutionary dynamics and largely determines the way we manage threatened coastal ecosystems. Here we addressed different questions relating to connectivity by integrating direct and indirect genetic approaches over different spatial and ecological scales in a coral reef fish in the Red Sea. We developed 35 novel microsatellite loci for our study organism the two-band anemonefish Amphiprion bicinctus (Rüppel 1830), which served as the basis of the following approaches. First, we collected nearly one thousand samples of A. bicinctus from 19 locations across 1500 km along the Saudi Arabian coast to infer population genetic structure. Genetic variability along the northern and central coast was weak, but showed a significant break at approximately 20°N. Implementing a model of isolation by environment with chlorophyll-a concentrations and geographic distance as predictors we were able to explain over 90% of the genetic variability in the data (R2 = 0.92). For the second approach we sampled 311 (c. 99%) putative parents and 172 juveniles at an isolated reef, Quita al Girsh (QG), to estimate self-recruitment using genetic parentage analysis. Additionally we collected 176 juveniles at surrounding locations to estimate larval dispersal from QG and ran a biophysical dispersal model of the system with real5 time climatological forcing. In concordance with model predictions, we found a complete lack (c. 0.5%) of self-recruitment over two sampling periods within our study system, thus presenting the first empirical evidence for a largely open reef fish population. Lastly, to conceptualize different hypotheses regarding the underlying processes and mechanisms of self-recruitment versus long-distance dispersal in marine organisms with pelagic larval stages, I introduce and discuss the concept of “origin effects”, providing the theoretical background to some of the questions that have arisen during this research. Overall, this thesis has generated significant new insights into the patterns of coral reef fish connectivity, specifically for the Red Sea, where such information has previously been scarce.

Severe weather events frequently affect important marine fish stocks and fisheries along the United States Atlantic and Gulf of Mexico coasts. However, the effects of these events on fish and fisheries are not well understood. The availability of self-reported data from two fisheries in a region frequently affected by tropical cyclones provided a unique opportunity to investigate short-term responses to past events. This study involved selecting severe weather events, calculating changes in effort and catch-per-unit- effort (CPUE), and analyzing those changes across various temporal, spatial, and species-specific scenarios. Responses in each variable were analyzed within and across scenario factors and explored for correlations and linear multivariate relationships with hypothesized explanatory variables. A negative overall directional change was identified for logbook fishing effort. Based on both correlations and linear models, changes in logbook fishing effort were inversely related to changes in average maximum wind speed. Severe weather events are more likely to affect fishing effort than catch rates of reef-fish species. However, lack of responses in CPUE may also relate to the ability of this study to detect changes. The temporal and spatial scales analyzed in this study may not have been adequate for identifying changes in effort for the headboat fishery, or in CPUE for either fishery. Although there was no region-wide response in CPUE associated with severe weather events, further research on this topic is necessary to determine if storm-induced changes in fishery data are likely strong, long-lasting, or widespread enough to influence the outcome of stock-wide assessments. / Master of Science

Latitudinal patterns in reef fish assemblages reflect the influence of long-term environmental conditions, evolutionary processes and the recent, short-term influence of fishing. Long-term processes generate the typically common latitudinal patterns in reef fish assemblages, such as decreases in diversity and herbivory towards higher latitudes. These patterns reflect the global gradient in water temperature and the isolation of temperate regions from the tropics. Fishing also influences reef fish assemblages in that it decreases the abundance of large-bodied carnivore species on reefs, often leading to over-exploitation, depletion and in some cases the extirpation of populations. Indirectly, the removal of these large-bodied carnivores can influence the abundance of their prey, leading to an increase in non-target species. This study examines the latitudinal patterns in reef fish assemblages across a unique biogeographic region, the temperate Western Australian coast, and incorporates an investigation of the influence of fishing on the structure of these assemblages. Seven regions across seven degrees of latitude and seven degrees of longitude covering approximately 1500 km of coastline were sampled. Fish assemblages were characterised at each region using diver operated stereo-video transects. At each region, four locations, and within each location, four reefs were surveyed totalling 1344 transects. A significant gradient in water temperature exists with latitude and longitude. Along the Western Australian coast, and in contrast to other regions species diversity of reef fish increased towards higher latitudes and there was no evidence for a decrease in the biomass and abundance of herbivorous reef fish. The presence of the poleward flowing warm water Leeuwin current combined with the absence of major extinction events means the temperate Western Australian coast contrasts with global latitudinal trends in reef fish assemblage structure. The unique biogeographic history of temperate Western Australia has also generated a high degree of endemism among reef fish. Nearly 30 % of the species found along the west coast in this study are endemic to Western Australia, with the narrow range of these species playing an important role in the large scale patterns and spatial vi heterogeneity in reef fish assemblage structure. Furthermore, many of these endemic species are large-bodied carnivores and targeted by fishers. The impact of fishing on the abundance of large-bodied carnivores throughout the Western Australian temperate region is clear both spatially and temporally. The distribution of fishing effort is greatest along the west coast and decreases towards the south following the gradient in SST. Along the west coast, high levels of fishing effort have reduced the biomass and abundance of target carnivores to well below the standing biomass of the south coast where a low level of fishing effort occurs. This reduction in biomass is related to the historical declines in catch per unit effort (CPUE) of many key target species. These target species include endemic species such as Choerodon rubescens, Glaucosoma herbraicum, Epinephilides armatus Nemadactylus valenciennesi and Achoerodus gouldii.

L’étude de la diversité des espèces de poissons habitant les récifs coralliens fascine les chercheurs du monde entier depuis plus de 200ans. Comment ces organismes qui n’occupent que 1% de la surface des océans du globe ont-ils pu former un des groupes les plus riches des vertébrés existants ? La complexité de cette question ne réside pas seulement dans l’exceptionnelle diversité de formes, de couleurs et de comportements de ces espèces mais aussi dans l’inégale répartition de cette richesse. Des explorations du lagon de Mayotte, des côtes Cubaines ou de la grande barrière de corail donneront des perspectives très différentes de la diversité des poissons coralliens. Ces différences très importantes sont le résultat de processus ayant modelé, pendant des millions d’années, la répartition des espèces coralliennes, leur morphologie et leur comportement. Pendant ces millions d’années d’évolution, les poissons coralliens, ainsi que les espèces de coraux qui les abritent, ont été confrontés à des changements drastiques des conditions climatiques et à la dérive des continents. C’est l’influence de ces facteurs sur la répartition et la diversité des poissons coralliens, que j’ai étudié pendant ma thèse. Comprendre comment les espèces et les écosystèmes ont réagi aux changements environnementaux passés peut nous apporter des clés essentielles pour anticiper les changements à venir des écosystèmes que nous connaissons, sous l’influence des changements globaux. Les récifs coralliens étant sous une menace de plus en plus présente, je me suis particulièrement intéressé à l’influence de la disponibilité de l’habitat corallien sur les processus d’extinction, de dispersion et de spéciation (formation de nouvelles espèces par divergence génétique) des poissons coralliens.Afin de répondre à ces objectifs, plusieurs méthodes ont été employées. Dans un premier temps, une approche descriptive basée sur la répartition de la co-occurrence entre espèces sœurs et une comparaison entre une reconstruction globale de la dynamique des habitats coralliens allant du Crétacé (≈ -140 millions d’années) et les taux de diversification de plusieurs grands groupes de poissons récifaux, ont permis de montrer que les taux de diversification de plusieurs familles de poissons récifaux étaient dépendant de la fragmentation des habitats coralliens, et d’observer la concordance entre des évènements climatiques et tectoniques majeurs et l’évolution de la biodiversité des poissons coralliens.Après avoir identifié un lien entre fragmentation de l’habitat corallien et la diversification des poissons, une grande question demeure : Comment cette dynamique de l’habitat influence-t-elle dans l’espace et le temps la diversité des poissons récifaux ? Pour répondre à cette question, une approche unique permettant de modéliser la dispersion, la spéciation et l’extinction des espèces dans un espace formé de grilles d’habitat dynamique a été développée et appliquée à plusieurs clades d’organismes marins côtiers (coraux, palétuviers et poissons). Cette approche a permis de démontrer comment la dérive des continents a contraint la dynamique de l’habitat corallien et a façonné les gradients de diversité de plusieurs groupes d’organismes marins côtiers. Enfin, l’extension de cette approche aux récifs tempérés, a permis de montrer l’interaction entre l’influence de la dérive des continents et des processus écologiques sur la colonisation et le maintien d’espèces de poissons récifaux dans les milieux tempérés, expliquant en partie la formation du gradient latitudinal de diversité des poissons récifaux.Ces travaux ouvrent la voie vers l’utilisation d’une nouvelle génération de modèles spatialisés de diversification et la prise en compte de la dynamique des habitats passés dans l’étude des processus de diversification. / The exceptional diversity of fishes that inhabit coral reefs fascinates researched from all over the world since over 200years. How can those organisms, that only occupy 1% of the surface of the oceans, form one of the richest group of extant vertebrates? The complexity of this question does not only lie in the extraordinary diversity of morphologies, colors and behaviors, but also roots in the heterogeneous repartition of that richness. Explorations of Mayotte’s lagoon, Cuban coasts or the great barrier reef will show different perspectives of coral-reef fish’ diversity. Those pervasive differences are the result of processes that shaped, during millions of years the repartition of coral-reef species, their morphology and their behavior. During those millions of years of evolution, coral-reef fishes along with species that shelter them, faced massive climatic and tectonic changes. During my PhD, I studied the influence of those factors on the repartition and the diversity of coral-reef fishes. Understanding how species and ecosystems responded to important environmental changes can provide essential insights to anticipate future changes of ecosystem composition and functioning under global changes’ pressure. As coral-reefs are under more and more threatening pressures, I particularly focused on the influence of coral habitat availability on extinction, dispersion and speciation processes of coral-reef fishes.To achieve this goal, several methods have been employed. First, a descriptive approach based on sister-species co-occurrence patterns and the comparison between a global reconstruction of coral-reef habitat dynamics from the Cretaceous (≈ -140 million years) to present and the evolution of several speciose groups of coral-reef fishes permitted to identify a link between diversification rates of several groups of coral-reef fishes and coral habitat fragmentation and to observe the concordance between major earth-history events and biodiversity dynamics of coral-reef fishes.After the identification of a link between habitat fragmentation and coral-reef fishes’ diversification, an important question remains: What are the mechanisms underlying the influence of habitat dynamics on temporal and spatial variations of reef-fish biodiversity? To answer this question a unique approach allowing modeling of species dispersal, extinction and speciation in a gridded space varying in function of habitat dynamics, has been developed and applied to several groups of coastal marine organisms (corals, mangroves, fishes). This approach provided mechanistic insights about how plate movements drove coral reef habitat dynamics and shaped biodiversity gradients of several groups of coastal marine organisms. Finally, the extension of this approach to temperate reefs (rocky reefs), provided mechanistic insights about the interplay between the influence of tectonic events and ecological processes in the formation of present-day latitudinal gradient of biodiversity of reef-fishes.This thesis paves the way towards the use of a new generation of spatialized mechanistic models of macroevolution and the consideration of the influence of past-habitat dynamics in the study of diversification processes.

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West Florida Shelf in the Florida Middle Grounds (FMG), Madison-Swanson (MS) and Steamboat Lumps (SL) closed areas. High resolution multibeam bathymetry is available for these areas and was important for the deployment of C-BASS which is towed just above the seafloor (2-3 meters above the bottom). This system can facilitate regular surveys of fishes which inhabit untrawlable bottom types (e.g. reefs, pinnacles, boulders) and within habitats where lethal, extractive techniques are prohibited such as in protected areas. To address potential biases resulting from fish reactions towards C-BASS, observed reactive behavior was analyzed in addition to far-field reactive behavior towards C-BASS using stationary camera pods. Most fish observed on C-BASS imagery exhibited weak negative or neutral behavior at proportions of 49% and 38%, respectively. Of those fish which did negatively react to C-BASS, almost all movement was in the 180° and 0° directions (right and left) relative to the tow body's movement. Preliminary results from the direct observation (far-field) experiments also demonstrated a general lack of reactive behavior as C-BASS was towed nearby with no significant decreases in mean abundance of fishes between the periods before, during and after C-BASS was towed over an area (95% confidence level). Although behavioral reactions are species-specific, results indicate that the system may not greatly deter the species of interest (i.e. snappers, groupers, porgies, lionfish, and amberjacks) in this study. Density estimates and subsequent first-order total abundance estimates were also developed for stratified habitat types in the FMG and MS. Overall abundance estimates were greater in 2014 than in 2013 which likely were a result of increased illumination, improvements to video quality, and lower chlorophyll and turbidity levels in 2014. With minor improvements and further behavior analysis, it is expected C-BASS can provide accurate, precise abundance estimates of target reef fish species for management purposes.

The goal of this research was to develop statistically robust ecosystem-based approaches, while optimizing data acquisition on relatively unexploited fish species in South Florida reefs, i.e., parrotfishes, Family Scaridae, in Biscayne Bay (with seasonal roller frame beam trawl surveys, 1996-2000) and Florida Keys (with annual Reef Fish Visual Censuses, 1997-2001), by following these steps: (I) analysis of information gaps for the stocks, including systematics, biogeography, population dynamics, reproductive ecology, trophodynamics, habitat use, and fisheries dynamics of Western Atlantic parrotfishes; (II) determination of primary research objectives from prioritization in Step I; (III) determination of essential fish habitats, ontogenetic shifts, migrations, and reef-seagrass habitat, from integration of stratified sampling design for fisheries-independent surveys, habitat selection theory-based analyses, and length-based analyses; (IV) estimation of population dynamics and fisheries-specific parameters encompassing life history demographics from empirical data or comparisons to theoretical expectations adapted to local conditions; (V) simulation modeling of a realistic range of fishing scenarios and demographic characteristics to evaluate the efficacy of potential traditional fisheries and spatial management strategies; and (VI) application of sampling optimization procedures and fisheries ecology approaches. Four scarid species had an estimated combined abundance of ca. 36.8 x 106 individuals in the Florida Keys. Connectivity among seagrass beds, coral reefs and deep waters had three major patterns: seagrass dwellers, reef dwellers, with inshore-to-offshore ontogenetic , and a seagrass-reef connection, using Biscayne Bay as an important recruitment ground. Marine protected areas of the Florida Keys National Marine Sanctuary did not show effects on abundance, size composition or spatial distribution of any parrotfish studied. Simulations suggested relatively short longevities (5-10 years), moderate body growth curvature, high instantaneous natural mortality rates (0.3-0.6 y super minus one), and low annual survival rates (27-54%). Simulated estimates of fishing mortalities ranged from 0.3 to 0.6 y super minus one, indicating low levels of exploitation, but low Spawning Potential Ratios (SPR = 23.5-26%). Proposed potential exploitation based on a legal minimum size equal to their size at first maturity and fishing rates equal or below to their natural mortality should secure SPR values at 45-48%.