Abstract Conspicuous morphological features such as rings, ringlenses, lenses, barlenses, and spiral arms are observed in many nearby disk galaxies. These features are believed to form due to the so-called secular evolution after the galaxies were formed, which means that their disks evolve in a more passive fashion and in longer timescales, compared to their formation processes. This slow evolution of disks is due to the effect of non-axisymmetric potentials, among which, a bar potential is perhaps the most effective of all. Strong rotating bars redistribute angular momentum and material through the disks of galaxies very effciently, and produce resonances. At these resonances the material is trapped and starts forming stars, creating beautiful rings. However, rings are not the only structure observed in disk galaxies. There are also spiral arms that, might or might not be created by bars. Other type of structures are lenses, which in images appear as flat light distributions with sharp edges, and ringlenses, whose appearance is intermediate between those of rings and lenses. Also, there are barlenses, which are conspicuous lens-like structures embedded in bars, and have been suggested to be the more face-on counterparts of Boxy/Peanut/X-shaped bulges. The study of the physical properties of all these structures provides a tool to investigate the mechanisms that create them and hence, to determine which are the processes that drive the slow evolution of galaxies. In this thesis I study the morphological structures using mainly data from the Spitzer Survey of Stellar Structure in Galaxies (S⁴G), by means of their sizes, orientations, shapes and colors. The S⁴G contains images of ~ 2500 nearby galaxies of all Hubble types at 3.6 and 4.5 μm, allowing a dust free view of the old stellar population which is subject of the secular evolution. Among the results presented in this thesis and the respective companion papers are the following. A catalog that contains the sizes, ellipticities and position angles of the morphological features in the S⁴G was created. This catalog also includes the measurements of the pitch angles of spiral arms. There is a corroboration of previous results showing that different types of morphological features appear in galaxies with different Hubble stages and bar families, and a confirmation of the resonant nature of rings but also of a high fraction of lenses and ringlenses. There is also an observation indicating that low mass galaxies lack nuclear structures such as nuclear rings due to the lack of inner Lindblad resonances caused by their low central mass concentrations. Observational evidence is presented indicating that a fraction of inner lenses in unbarred galaxies might be former barlenses of which the "thin bar" has probably dissolved or it is too faint to be detected. The sizes of barlenses show a tight linear correlation with those of bars, being the size of the barlens typically half the size of the bar. The study of the optical colors of barlenses reveals their similarity with bars, giving observational evidence that their stellar populations are similar, and distinguishes them from disks and nuclear regions. The orientations of barlenses with respect to that of bars and disks reveal that barlenses are vertically thick structures. All these results support the idea that barlenses are the vertically thick inner parts of bars and hence relate them observationally to Boxy/Peanut/X-shaped bulges. These results and others are published in a series of original papers in which I have collaborated and that are appended at the end of this work.

The story of a typical spiral galaxy like the Milky Way is a tale of the transformation of metal-poor hydrogen gas to heavier elements through nuclear burning in stars. This gas is thought to arrive in early times during the assembly phase of a galaxy and at late times through a combination of hot and cold “flows” representing external evolutionary processes that continue to the present. Through a somewhat still unclear mechanism, the atomic hydrogen is converted to molecules that collect into clouds, cool, condense, and form stars. At the end of these stars’ lives, much of their constituent gas is returned to the galaxy to participate in subsequent generations of star formation. In earlier times in the history of the universe, frequent and large galaxy mergers brought additional gas to further fuel this process. However, major merger activity began an ongoing decline several Gyr ago and star formation is now diminishing; the universe is in transitioning to an era in which the structural evolution of disk galaxies is dominated by slow, internal (“secular”) processes. In this evolutionary regime, stars and the gas from which they are formed participate in resonant gravitational interactions within disks to build ephemeral structures such as bars, rings, and small scale-height central bulges. This regime is expected to last far into the future in a galaxy like the Milky Way, punctuated by the periodic accretion of dwarf satellite galaxies but lacking in the “major” mergers that kinematically scramble disks into ellipticals. This thesis examines details of the story of gas from infall to structure-building in three major parts. The High- and Intermediate-Velocity Clouds (HVCs/IVCs) are clouds of H i gas at velocities incompatible with simple models of differential Galactic rotation. Proposed ideas explaining their observed properties and origins include (1) the infall of low-metallicity material from the Halo, possibly as cold flows along filaments of a putative “Cosmic Web”; (2) gas removed from dwarf satellite galaxies orbiting the Milky Way via some combination of ram pressure stripping and tidal disruption; and (3) the supply and return feeds of a “Galactic Fountain” cycling gas between the Disk and Halo. Numerical values of their observed properties depend strongly on the Clouds’ distances. In Chapter 2, we summarize results of an ongoing effort to obtain meaningful distances to a selection of HVCs and IVCs using the absorption-line bracketing method. We find the Clouds are not at cosmological distances, and with the exception of the Magellanic Stream, they are generally situated within a few kiloparsecs of the Disk. The strongest discriminator of the above origin scenarios are the heavy element abundances of the Clouds, but to date few reliable Cloud metal- licities have been published. We used archival UV spectroscopy, supplemented by new observations with the Cosmic Origins Spectrograph aboard the Hubble Space Telescope and H I 21 cm emission spectroscopy from a variety of sources to compute elemental abundances relative to hydrogen for 39 HVC/IVC components along 15 lines of sight. Many of these are previously unpublished. We find support for all three origin scenarios enumerated above while more than doubling the number of robust measurements of HVCs/IVCs in existence. The results of this work are detailed in Chapter 3. In Chapter 4 we present the results of a spectroscopic study of the high-mass protostellar object NGC 7538 IRS 9 made with the Texas Echelon Cross Echelle Spectrograph (TEXES), a sensitive, high spectral resolution, mid-infrared grating spectrometer and compare our observations to published data on the nearby object NGC 7538 IRS 1. Forty-six individual lines in vibrational modes of the molecules C₂H₂, CH₄, HCN, NH₃ and CO were detected, including two isotopologues (¹³CO, ¹²C¹⁸O) and one combination mode ([nu]₄+[nu]₅ C₂H₂). Fitting synthetic spectra to the data yielded the Doppler shift, excitation temperature, Doppler b parameter, column density and covering factor for each molecule observed; we also computed column density upper limits for lines and species not detected, such as HNCO and OCS. We find differences among spectra of the two objects likely attributable to their differing radiation and thermal environments. Temperatures and column densities for the two objects are generally consistent, while the larger line widths toward IRS 9 result in less saturated lines than those toward IRS 1. Finally, we compute an upper limit on the size of the continuum-emitting region (~2000 AU) and use this constraint and our spectroscopy results to construct a schematic model of IRS 9. In Chapters 5 and 6, we describe studies of the bright, nearby, edge-on spiral galaxies NGC 4565 and NGC 5746, both previously classified as type Sb spirals with measured bulge-to-total luminosity ratios B/T ≃ 0.4. These ratios indicate merger-built, “classical” bulges but in reality represent the photometric signatures of bars seen end-on. We performed 1-D photometric decompositions of archival Hubble Space Telescope, Spitzer Space Telescope, and Sloan Digital Sky Survey images spanning a range of wavelengths from the optical to near-infrared that penetrate the thick midplane dust in each galaxy. In both, we find high surface brightness, central stellar components that are clearly distinct from the boxy bar and from the disk; we interpret these structures as small scale height “pseudobulges” built from disk material via internal, resonant gravitational interactions among disk material − not classical bulges. The brightness profiles of the innermost component of each galaxy is well fitted by a Sersic function with major/minor axis Sersic indices of n = 1.55±0.07 and 1.33±0.12 for NGC 4565 and n = 0.99±0.08 and 1.17 ± 0.24 for NGC 5746. The true “bulge-to-total” ratios of these galaxies are considerably smaller than once believed: 0.061+0.009 and 0.136 ± 0.019, −0.008, respectively. Therefore, more galaxies than we thought contain little or no evidence of a merger-built classical bulge. We argue further that a classical bulge cannot hide behind the dust lane of either galaxy and that other structures built exclusively through secular evolution processes such as inner rings, both revealed through the infrared imagery, argue strongly against any merger violence in the recent past history of these objects. From a formation point of view, NGC 4565 and NGC 5746 are giant, pure-disk galaxies, and we do not understand how such galaxies form in a ΛCDM universe. This presents a challenge to our picture of galaxy formation by hierarchical clustering because it is difficult to grow galaxies as large as these without making big, classical bulges. We summarize the work presented in this thesis in Chapter 7 and conclude with speculations about the future direction of research in this field. / text

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