Signal reception and production form the basis of animal communication, and are largely constrained by environmental biophysical factors such as environmental light. However, the role of environmental light in producing variation in either signal reception or production has not been fully investigated. Using two distinct environmental light treatments, as well as a third treatment for a sampling of adults, I recorded corneal electroretinograms, lens transmission, and spectral reflectance of the body pattern of juvenile and adult Nile tilapia to chart the effect of environmental light on visual sensitivity and body colouration throughout ontogeny. Environmental light had an age-dependent effect on spectral sensitivity and an age-independent effect on spectral reflectance. Spectral sensitivity in juveniles reared under a broad-spectrum light treatment and a red-shifted light treatment differed mostly at short wavelengths, where the irradiance of the two environmental light treatments differed the most. In contrast, adults reared under the two environmental light treatments did not differ in spectral sensitivity. Lens transmission did not differ significantly between environmental light treatments, indicating that differences in spectral sensitivity of juveniles originated in the retina. Both juveniles and adults reared under the two environmental light treatments differed in spectral reflectance, and adults transferred to the third environmental light treatment differed in spectral reflectance from their counterparts reared under the two original treatments. These results demonstrate that environmental light plays a large role in shaping signal reception in juveniles and signal production throughout ontogeny, suggesting that environmental light has the capacity to drive ecological speciation. / Thesis (Master, Biology) -- Queen's University, 2012-12-03 11:32:59.441

Resveratrol (RSV) is a natural compound that improves mitochondrial function and metabolic health in animal models. Thus far, RSV’s effects on metabolic outcomes in humans are controversial, and RSV’s acute mechanism has not yet been confirmed in vivo. This study aimed to evaluate the effect of an acute dose of RSV on insulin sensitivity and fatty acid oxidation, and to determine RSV’s mechanism of action in human skeletal muscle and adipose tissue. Overweight males (n=8; BMI, 30.5±3.6; VO2peak, 34.0±7.3 ml/kg) reported to the lab on 2 occasions and were provided a breakfast supplemented with 0.3g of RSV or a placebo pill. Experiments were performed in random order using a double blind crossover design. Gas exchange measures, blood samples, and skeletal muscle and adipose tissue biopsies were obtained before and 2 hours after the supplement meal. RSV acutely improved insulin sensitivity, but had no effect on fatty acid oxidation. Additionally, RSV supplementation had no effect on the intracellular signaling of key proteins proposed to mediate its effects in skeletal muscle and adipose tissue. Taken together, these results suggest a single dose of RSV can acutely enhance insulin sensitivity, but its mechanism of action is not conserved across species, and its intracellular signaling pathway is different in humans than previously thought. Due to its insulin sensitizing effect, RSV retains its clinical value, but further research is required to determine its most useful application for human metabolic health. / Thesis (Master, Kinesiology & Health Studies) -- Queen's University, 2013-06-06 13:30:03.522

Water utilities are facing pressure to continue to provide high-quality potable water in an increasingly energy constrained world; managing the ageing infrastructure that exists in many countries is a challenge in and of itself, but recently this has been coupled with political and public attention to the environmental impacts of the distribution system. Utility managers need to take a holistic approach to decision-making in order to determine all of the impacts of their plans. The intention of this thesis is to present a set of considerations for utility planners and managers to provide clarity to the trade-offs associated with any pipe replacement decision. This research has examined the energy relationships between operational energy reduction and the embodied energy tied to replacing deteriorated pipes in water distribution networks. These relationships were investigated through the development and application of a life-cycle energy analysis (LCEA) for three different pipe replacement schedules developed with the intent to reduce leakage in the system. The results showed that the embodied energy for pipe replacement is significant even when compared against the large amount of energy required to operate a large-scale water utility. The annual operational energy savings of between 8.9 and 9.6 million kWh achieved by 2070 through pipe replacement comes at a cost; 0.88-2.05 million kWh/mile for replacement with ductile iron pipes with diameters of 6” to 16” respectively. This imbalance resulted in a maximum energy payback period of 17.6 years for the most aggressive replacement plan in the first decade. Some of the assumptions that were used to complete the LCEA were investigated through a sensitivity analysis; specific factors that were numerically queried in this chapter include the break rate forecasting method, pumping efficiency, the leakage duration and the flow rate per leakage event. Accurate accounting of energy requirements for pipe replacement will become even more important as energy and financial constraints continue to increase for most water utilities, this thesis provides guidance on some of the complex relationships that need to be considered. / Thesis (Master, Civil Engineering) -- Queen's University, 2013-08-21 16:51:18.963

Mammalians process their photoreceptions through lateral eyes; however, non-mammalian vertebrates and invertebrates possess additional extraretinal photoreceptors over their bodies to detect light stimuli. Chromatophores, i.e. dermal specialized pigment cells, play important roles in the regulation of body patterns. Since chromatophores derive from neural crest, they share the common embryonic origin with retina. Recent evidence shows that they are light-sensitive due to opsin expression. In the present study, the expression of seven cone opsins was detected in tilapia caudal fin tissues. Moreover, distinct photoresponses were found in two chromatophore types. Regardless of stimulating wavelengths, melanophores tend to disperse and maintain cell shape at dispersion stage by shuttling pigment granules. Conversely, erythrophores respond to light in a wavelength-dependent manner. The opsin expression profiles of melanophores and erythrophores imply SWS1 and RH2 group genes may play important roles in chromatophore photoresponses. Through measuring photosensitivity, I suggest the two opsins play opposite roles in light-induced translocations of pigment granules within erythrophores: SWS1 for aggregations at UV and short wavelength regions and RH2b for dispersion in middle/long wavelengths. An antagonistic interaction occurs in the overlapping of the absorbance spectra of the two opsins. I also found that the photoresponses take place along with the occurrence of the change of cell membrane potential. In addition, the effect of different light backgrounds (broad spectrum, short wavelength-rich, and red-shifted light conditions) on the photosensitivity of tilapia erythrophores was investigated. I found that the major opsin classes (SWS1 and RH2b) responsible for photoresponses remain constant in three groups of erythrophores. Together, I postulate that melanophores may serve as a light filter in integumentary tissues, and the chromatically antagonistic mechanism enables tilapia erythrophores to sense the subtle change of environmental photic condition and to fine-tune pigmentation. I also investigated the ontogenetic change of photoresponses of rainbow trout melanophores. Distinct photoresponses were found in parrs and smolts. Furthermore, smolt melanophores responded to light in a wavelength-dependent manner. Since the change of coloration and visual system during smoltification of salmonids is regulated by thyroid hormone (TH), I suggest that the development of melanophore photosensitivity is associated to TH as well. / Thesis (Ph.D, Biology) -- Queen's University, 2013-08-27 09:57:22.907

Mammalians process their photoreceptions through lateral eyes; however, non-mammalian vertebrates and invertebrates possess additional extraretinal photoreceptors over their bodies to detect light stimuli. Chromatophores, i.e. dermal specialized pigment cells, play important roles in the regulation of body patterns. Since chromatophores derive from neural crest, they share the common embryonic origin with retina. Recent evidence shows that they are light-sensitive due to opsin expression. In the present study, the expression of seven cone opsins was detected in tilapia caudal fin tissues. Moreover, distinct photoresponses were found in two chromatophore types. Regardless of stimulating wavelengths, melanophores tend to disperse and maintain cell shape at dispersion stage by shuttling pigment granules. Conversely, erythrophores respond to light in a wavelength-dependent manner. The opsin expression profiles of melanophores and erythrophores imply SWS1 and RH2 group genes may play important roles in chromatophore photoresponses. Through measuring photosensitivity, I suggest the two opsins play opposite roles in light-induced translocations of pigment granules within erythrophores: SWS1 for aggregations at UV and short wavelength regions and RH2b for dispersion in middle/long wavelengths. An antagonistic interaction occurs in the overlapping of the absorbance spectra of the two opsins. I also found that the photoresponses take place along with the occurrence of the change of cell membrane potential. In addition, the effect of different light backgrounds (broad spectrum, short wavelength-rich, and red-shifted light conditions) on the photosensitivity of tilapia erythrophores was investigated. I found that the major opsin classes (SWS1 and RH2b) responsible for photoresponses remain constant in three groups of erythrophores. Together, I postulate that melanophores may serve as a light filter in integumentary tissues, and the chromatically antagonistic mechanism enables tilapia erythrophores to sense the subtle change of environmental photic condition and to fine-tune pigmentation. I also investigated the ontogenetic change of photoresponses of rainbow trout melanophores. Distinct photoresponses were found in parrs and smolts. Furthermore, smolt melanophores responded to light in a wavelength-dependent manner. Since the change of coloration and visual system during smoltification of salmonids is regulated by thyroid hormone (TH), I suggest that the development of melanophore photosensitivity is associated to TH as well. / Thesis (Ph.D, Biology) -- Queen's University, 2013-08-27 09:57:22.907

Aging is associated with increased insulin resistance, a condition in which the tissue response to insulin-stimulated glucose uptake is reduced. Insulin resistance is a strong predictor of disease and mortality. Aging is also associated with a decline in physical activity, lower cardiorespiratory fitness (ability to deliver oxygen to active muscles during exercise), and increase in abdominal fat. Both low cardiorespiratory fitness (CRF) and excess abdominal fat are associated with reduced insulin sensitivity in older adults. Improvements in CRF and abdominal obesity through exercise training may be responsible for improvement in insulin sensitivity. Several investigations have reported that changes in CRF and abdominal obesity through exercise are associated with changes in insulin sensitivity. To our knowledge, no prior study has assessed whether change in CRF or abdominal fat alone explains the association between exercise and improvement in insulin sensitivity in older adults. Our findings suggest that improvement in CRF may not explain the exercise-induced change in insulin sensitivity. The improvement in insulin sensitivity from exercise is explained through a decrease abdominal fat that also occurs with exercise. Additionally, improvements in waist circumference, a surrogate measure for abdominal obesity, and body mass index together explained a large portion of exercise-induced change in insulin sensitivity compared to either variable alone. Our findings suggest that exercise combined with a healthy diet will improve insulin resistance, a risk factor for development of type 2 diabetes and cardiovascular disease in older adults. Our findings suggest that the reduction in abdominal obesity is the conduit by which exercise improves insulin sensitivity in older adults. Although CRF is not related to exercise-induced change in insulin sensitivity, change in CRF from exercise has been reported to decrease risk for other health conditions, such as hypertension and all-cause mortality. Our findings suggest that clinicians should measure both waist circumference and body mass index when evaluating the effectiveness of a lifestyle-based treatment strategy for improving insulin resistance and its associated health outcomes in older adults. / Thesis (Master, Kinesiology & Health Studies) -- Queen's University, 2013-09-27 14:53:00.796

Rises in anthropogenic CO2 emissions are now widely acknowledged to be responsible for changes in the global climate, with potentially disastrous consequences if these rises continue unchecked. Although knowledge of ecosystem responses to climate change has improved, there are still large underlying uncertainties regarding their response to warming. Of all the ecosystems with the potential to mitigate rises in CO2, forests are arguably the most important because of their huge land area and store of carbon. A large proportion of the carbon stored in forests is found in the soil, and it is the response of this soil carbon to temperature that is the main determinant of a forest’s ability to act as a carbon sink, or indeed source. Understanding the response of soil carbon flux to temperature, as well as the contribution of soil carbon flux to the carbon balance of forests as a whole is crucial in helping to improve modelling approaches. In this thesis I first examined the temperature response of old and new soil organic carbon from a Sitka spruce plantation under controlled laboratory conditions. Both the old and new soil organic carbon showed similar temperature sensitivities after prolonged incubation at 20 °C, thus implying a similar response to increasing temperatures. Using a variety of different methods (root intensity, meshing and stable isotope analysis) I then studied the responses under field conditions. These methods showed that autotrophic respiration was responsible for up to 50 % of total soil respiration, and was more sensitive to temperature than heterotrophic respiration. Finally, I compared the contributions and determinants (particularly temperature and moisture) of soil respiration fluxes to ecosystem fluxes at a temperate (Sitka spruce) and Mediterranean (Maritime pine) forest. Temperature was found to be the dominant driver of soil respiration fluxes at the temperature forest, whilst soil respiration was limited by moisture at the Mediterranean forest. Statistically significant relationships between net ecosystem productivity and soil respiration (and the stable isotope signature of soil respiration) were found at both forests, indicating a close coupling between above-ground processes and soil respiration.

This study investigated effects of monitoring on correspondence between nonverbal responding and verbal descriptions of those contingencies, when verbal descriptions and contingencies were compatible and when incompatible. In the Nonverbal Component, the contingency for key pressing was either on a 0.8 s IRT or a 3.4 s IRT. In the Verbal Component, subjects made responses to a statement about the contingency for reinforcement in the Nonverbal Component. Shaping was used to establish targets of 0.8 s and 3.4 s in this component. Results indicated that across 7/8 opportunities subjects exhibited nonverbal and verbal behavior that was sensitive to their respective contingencies regardless of compatibility. This sensitivity to contingencies was not affected by the presence of a monitor.

Doctor of Philosophy / Department of Agronomy / Stephen M. Welch / Global crop production must be doubled by 2050 to feed 9 billion people. Novel crop improvement methods and management strategies are the sine qua non for achieving this goal. This requires reliable quantitative methods for predicting the behavior of crop cultivars in novel, time-varying environments. In the last century, two different mathematical prediction approaches emerged (1) quantitative genetics (QG) and (2) ecophysiological crop modeling (ECM). These methods are completely disjoint in terms of both their mathematics and their strengths and weaknesses. However, in the period from 1996 to 2006 a method for melding them emerged to support breeding programs. The method involves two steps: (1) exploiting ECM’s to describe the intricate, dynamic and environmentally responsive biological mechanisms determining crop growth and development on daily/hourly time scales; (2) using QG to link genetic markers to the values of ECM constants (called genotype-specific parameters, GSP’s) that encode the responses of different varieties to the environment. This can require huge amounts of computation because ECM’s have many GSP’s as well as site-specific properties (SSP’s, e.g. soil water holding capacity). Moreover, one cannot employ QG methods, unless the GSP’s from hundreds to thousands of lines are known. Thus, the overall objective of this study is to identify better ways to reduce the computational burden without minimizing ECM predictability. The study has three parts: (1) using the extended Fourier Amplitude Sensitivity Test (eFAST) to globally identify parameters of the CERES-Sorghum model that require accurate estimation under wet and dry environments; (2) developing a novel estimation method (Holographic Genetic Algorithm, HGA) applicable to both GSP and SSP estimation and testing it with the CROPGRO-Soybean model using 182 soybean lines planted in 352 site-years (7,426 yield observations); and (3) examining the behavior under estimation of the anthesis data prediction component of the CERES-Maize model. The latter study used 5,266 maize Nested Associated Mapping lines and a total 49,491 anthesis date observations from 11 plantings. Three major problems were discovered that challenge the ability to link QG and ECM’s: 1) model expressibility, 2) parameter equifinality, and 3) parameter instability. Poor expressibility is the structural inability of a model to accurately predict an observation. It can only be solved by model changes. Parameter equifinality occurs when multiple parameter values produce equivalent model predictions. This can be solved by using eFAST as a guide to reduce the numbers of interacting parameters and by collecting additional data types. When parameters are unstable, it is impossible to know what values to use in environments other than those used in calibration. All of the methods that will have to be applied to solve these problems will expand the amount of data used with ECM’s. This will require better optimization methods to estimate model parameters efficiently. The HGA developed in this study will be a good foundation to build on. Thus, future research should be directed towards solving these issues to enable ECM’s to be used as tools to support breeders, farmers, and researchers addressing global food security issues.

This thesis defends Semantic Pluralism, the view that sentences express sets of propositions in context. It puts forward two arguments against Contextualism, the main opposing view, on which each sentence expresses exactly one proposition in context. It spells out two versions of Pluralism: Flexible Pluralism, which takes most sentences to be context-sensitive, and Strong Pluralism, which denies that context-sensitivity is widespread. And it defends Flexible Pluralism and Strong Pluralism from a number of objections.