The transport of a species in complex flow fields is an important phenomenon related to many areas in science and engineering. There has been significant progress theoretically and experimentally in understanding active transport in steady, periodic flows such as a chain of vortices but many open questions remain for transport in complex and chaotic flows. This thesis investigates the active transport in a three-dimensional, time-dependent flow field characterized by a spatiotemporally chaotic state of Rayleigh-Be?nard convection. A nonlinear Fischer-Kolmogorov-Petrovskii-Piskunov reaction is selected to study the transport within these flows. A highly efficient, parallel spectral element approach is employed to solve the Boussinesq and the reaction-advection-diffusion equations in a spatially-extended cylindrical domain with experimentally relevant boundary conditions. The transport is quantified using statistics of spreading and in terms of active transport characteristics like front speed and geometry and are compared with those results for transport in steady flows found in the literature. The results of the simulations indicate an anomalous diffusion process with a power law 2 < ? < 5/2 a result that deviates from other superdiffusive processes in simpler flows, and reveals that the presence of spiral defect chaos induces strongly anomalous transport. Additionally, transport was found to most likely occur in a direction perpendicular to a convection roll in the flow field. The presence of the spiral defect chaos state of the fluid convection is found to enhance the front perimeter by t^3/2 and by a perimeter enhancement ratio r(p) = 2.3. / Master of Science

An important phenomenon of systems driven far-from-equilibrium is spatiotemporal chaos where the dynamics are aperiodic in both time and space. We explored this numerically for three systems: the Lorenz-96 model, the Swift-Hohenberg equation, and Rayleigh-Bénard convection. The Lorenz-96 model is a continuous in time and discrete in space phenomenological model that captures important features of atmosphere dynamics. We computed the fractal dimension as a function of system size and external forcing to estimate characteristic length and time scales describing the chaotic dynamics. We found extensive chaos with significant deviations from extensivity for small changes in system size and also the power-law growth of the dimension with increasing forcing. The Swift-Hohenberg equation is a partial differential equation for a scalar field, which has been widely used as a model for the study of pattern formation. We found that the magnitude of the mean flow in this model must be sufficiently large for spiral defect chaos to occur. We also explored the spatiotemporal chaos in experimentally accessible Rayleigh-Bénard convection using large-scale numerical simulations of the Boussinesq equations and the corresponding tangent space equations. We performed a careful study analyzing the impact of variations in the domain size, Rayleigh number, and Prandtl number on the system dynamics and fractal dimension. In addition, we quantified the dynamics of the spectrum of Lyapunov exponents and the leading order Lyapunov vector in an effort to connect directly with the dynamics of the flow field patterns. Further, we numerically studied the synchronization of chaos in convective flows by imposing time-dependent boundary conditions from a principal domain onto an initially quiescent target domain. We identified a synchronization length scale to quantify the size of a chaotic element using only information from the pattern dynamics. We also explored the relationship of this length scale with the pattern wavelength. Finally, we analyzed bioconvection which occurs as the result of the collective behavior of a suspension of swimming microorganisms. We developed a series of simulations to capture the gyrotactic pattern formation of the swimming algae. The results can be compared with the corresponding trend of pattern instabilities observed in the experimental studies. / Ph. D.

When two or more chaotic systems are coupled, they may exhibit synchronized chaotic oscillations. The synchronization of chaos is usually understood as the regime of chaotic oscillations in which the corresponding variables or coupled systems are equal to each other. This kind of synchronized chaos is most frequently observed in systems specifically designed to be able to produce this behaviour. In this thesis, one particular type of synchronization, called impulsive synchronization, is investigated and applied to low dimensional chaotic, hyperchaotic and spatiotemporal chaotic systems. This synchronization technique requires driving one chaotic system, called response system, by samples of the state variables of the other chaotic system, called drive system, at discrete moments. Equi-Lagrange stability and equi-attractivity in the large property of the synchronization error become our major concerns when discussing the dynamics of synchronization to guarantee the convergence of the error dynamics to zero. Sufficient conditions for equi-Lagrange stability and equi-attractivity in the large are obtained for the different types of chaos-generating systems used. The issue of robustness of synchronized chaotic oscillations with respect to parameter variations and time delay, is also addressed and investigated when dealing with impulsive synchronization of low dimensional chaotic and hyperchaotic systems. Due to the fact that it is impossible to design two identical chaotic systems and that transmission and sampling delays in impulsive synchronization are inevitable, robustness becomes a fundamental issue in the models considered. Therefore it is established, in this thesis, that under relatively large parameter perturbations and bounded delay, impulsive synchronization still shows very desired behaviour. In fact, criteria for robustness of this particular type of synchronization are derived for both cases, especially in the case of time delay, where sufficient conditions for the synchronization error to be equi-attractivity in the large, are derived and an upper bound on the delay terms is also obtained in terms of the other parameters of the systems involved. The theoretical results, described above, regarding impulsive synchronization, are reconfirmed numerically. This is done by analyzing the Lyapunov exponents of the error dynamics and by showing the simulations of the different models discussed in each case. The application of the theory of synchronization, in general, and impulsive synchronization, in particular, to communication security, is also presented in this thesis. A new impulsive cryptosystem, called induced-message cryptosystem, is proposed and its properties are investigated. It was established that this cryptosystem does not require the transmission of the encrypted signal but instead the impulses will carry the information needed for synchronization and for retrieving the message signal. Thus the security of transmission is increased and the time-frame congestion problem, discussed in the literature, is also solved. Several other impulsive cryptosystems are also proposed to accommodate more solutions to several security issues and to illustrate the different properties of impulsive synchronization. Finally, extending the applications of impulsive synchronization to employ spatiotemporal chaotic systems, generated by partial differential equations, is addressed. Several possible models implementing this approach are suggested in this thesis and few questions are raised towards possible future research work in this area.

When two or more chaotic systems are coupled, they may exhibit synchronized chaotic oscillations. The synchronization of chaos is usually understood as the regime of chaotic oscillations in which the corresponding variables or coupled systems are equal to each other. This kind of synchronized chaos is most frequently observed in systems specifically designed to be able to produce this behaviour. In this thesis, one particular type of synchronization, called impulsive synchronization, is investigated and applied to low dimensional chaotic, hyperchaotic and spatiotemporal chaotic systems. This synchronization technique requires driving one chaotic system, called response system, by samples of the state variables of the other chaotic system, called drive system, at discrete moments. Equi-Lagrange stability and equi-attractivity in the large property of the synchronization error become our major concerns when discussing the dynamics of synchronization to guarantee the convergence of the error dynamics to zero. Sufficient conditions for equi-Lagrange stability and equi-attractivity in the large are obtained for the different types of chaos-generating systems used. The issue of robustness of synchronized chaotic oscillations with respect to parameter variations and time delay, is also addressed and investigated when dealing with impulsive synchronization of low dimensional chaotic and hyperchaotic systems. Due to the fact that it is impossible to design two identical chaotic systems and that transmission and sampling delays in impulsive synchronization are inevitable, robustness becomes a fundamental issue in the models considered. Therefore it is established, in this thesis, that under relatively large parameter perturbations and bounded delay, impulsive synchronization still shows very desired behaviour. In fact, criteria for robustness of this particular type of synchronization are derived for both cases, especially in the case of time delay, where sufficient conditions for the synchronization error to be equi-attractivity in the large, are derived and an upper bound on the delay terms is also obtained in terms of the other parameters of the systems involved. The theoretical results, described above, regarding impulsive synchronization, are reconfirmed numerically. This is done by analyzing the Lyapunov exponents of the error dynamics and by showing the simulations of the different models discussed in each case. The application of the theory of synchronization, in general, and impulsive synchronization, in particular, to communication security, is also presented in this thesis. A new impulsive cryptosystem, called induced-message cryptosystem, is proposed and its properties are investigated. It was established that this cryptosystem does not require the transmission of the encrypted signal but instead the impulses will carry the information needed for synchronization and for retrieving the message signal. Thus the security of transmission is increased and the time-frame congestion problem, discussed in the literature, is also solved. Several other impulsive cryptosystems are also proposed to accommodate more solutions to several security issues and to illustrate the different properties of impulsive synchronization. Finally, extending the applications of impulsive synchronization to employ spatiotemporal chaotic systems, generated by partial differential equations, is addressed. Several possible models implementing this approach are suggested in this thesis and few questions are raised towards possible future research work in this area.

The term spatiotemporal chaos refers to physical phenomena that exhibit irregular oscillations in both space and time. Examples of such phenomena range from cardiac dynamics to fluid turbulence, where the motion is described by nonlinear partial differential equations. It is well known from the studies of low dimensional chaotic systems that the state space, the space of solutions to the governing dynamical equations, is shaped by the invariant sets such as equilibria, periodic orbits, and invariant tori. State space of partial differential equations is infinite dimensional, nevertheless, recent computational advancements allow us to find their invariant solutions (exact coherent structures) numerically. In this thesis, we try to elucidate the chaotic dynamics of nonlinear partial differential equations by studying their exact coherent structures and invariant manifolds. Specifically, we investigate the Kuramoto-Sivashinsky equation, which describes the velocity of a flame front, and the Navier-Stokes equation for an incompressible fluid in a circular pipe. We argue with examples that this approach can lead to a theory of turbulence with predictive power.

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Philosophiae Doctor - PhD / In this thesis, we solve some time-dependent partial differential equations, and systems of such equations, that governs reaction-diffusion models in biology. we design and implement some novel exponential time differencing schemes to integrate stiff systems of ordinary differential equations which arise from semi-discretization of the associated partial differential equations. We split the semi-linear PDE(s) into a linear, which contains the highly stiff part of the problem, and a nonlinear part, that is expected to vary more slowly than the linear part. Then we introduce higher-order finite difference approximations for the spatial discretization. Resulting systems of stiff ODEs are then solved by using exponential time differencing methods. We present stability properties of these methods along with extensive numerical simulations for a number of different reaction-diffusion models, including single and multi-species models. When the diffusivity is small many of the models considered in this work are found to exhibit a form of localized spatiotemporal patterns. Such patterns are correctly captured by our proposed numerical schemes. Hence, the schemes that we have designed in this thesis are dynamically consistent. Finally, in many cases, we have compared our results with those obtained by other researchers.