Thesis (Ph.D)-University of KwaZulu-Natal, Pietermaritzburg, 2008. / Full text also available online. Scroll down for electronic link.

Doctor of Philosophy / Division of Biology / Mark C. Ungerer / Nuclear genome size varies immensely across flowering plants, spanning nearly 2400-fold. The causes and consequences of this vast amount of variation have intrigued biologists since it became clear that nuclear DNA amount did not reflect organismal complexity (the so-called C-value paradox). In my dissertation I utilize wild sunflower species in the genus Helianthus to examine the role of transposable elements (TEs), and in particular, long terminal repeat (LTR) retrotransposons, in generating genome size variation and whether variation in genome size influences aspects of plant growth and development across multiple organizational levels. The genus Helianthus provides an excellent system for studying these questions given four-fold variation in nuclear DNA content among diploid species and well-resolved phylogenetic relationships. Utilizing short-read Illumina data and sequence information from a diverse panel of Helianthus annuus (common sunflower) full-length LTR retrotransposons, I found that nuclear genome size in Helianthus species is positively correlated with repetitive DNA, and LTR retrotransposon subtypes generally show similar patterns in genomic abundance across taxa. Helianthus species with the largest genomes, however, exhibit large-scale amplification of a small number of LTR retrotransposon subtypes. Measuring aspects of plant growth and development at cell-, organ- and whole plant-levels in a panel of diploid Helianthus species that vary 4-fold in nuclear genome size, I found that genome size is negatively correlated with cell production rate, but that this negative correlation does not persist at higher organizational levels. Taken together, these results provide insights into the mechanisms contributing to genome size evolution in plants and the organizational level at which genome size may impact growth patterns and developmental rates. Genome expansion in wild sunflowers is influenced most significantly by amplification of a small number of TEs and not necessarily by a greater diversity of TEs. Genome size is strongly negatively correlated with cell production rate but this relationship weakens at higher organizational levels, such as that of organ and whole-plant development.

No description available.

Molecular DNA markers have become widely used in all areas of genetic research. The objectives of this thesis were to develop polymorphic markers in sunflower and utilize the markers for genetic and candidate gene analyses. Amplified fragment length polymorphism (AFLP) markers were used to estimate genetic similarities and assess the genetic diversity among 24 public oilseed inbred lines of sunflower (Helianthus annuus L.). A total of 359 AFLP markers were scored by using six AFLP primer combinations. Genetic similarities ranged from 0.70 to 0.91, polymorphism rate ranged from 7 to 24%, and polymorphic information contents (PICs) ranged from 0.0 to 0.5. Principal coordinate and cluster analysis separated the lines into two groups, B-lines and R-lines, illustrating breeding history, basic heterotic pattern and the widespread practice of using each group to develop new lines. ��9 stearoyl-ACP desaturase (SAD) and ��l2 oleate desaturase (OLD) cDNAs were cloned and sequenced. DNA fragment length polymorphism (DFLP), single strand conformational polymorphism (SSCP), and simple sequence repeat (SSR) markers were developed for the SAD6 and SAD17 genes among eight elite inbred lines. PICs for DFLP, SSCP, and SSR markers were 0.18, 0.37, and 0.30, respectively. Length variants were due to long monomeric repeats, insertions, and deletions in intron sequences, thereby producing polymorphic markers. OLD desaturates 18:1-PC (oleoyl phosphatidylcholine) to 18:2-PC, thereby converting oleic to linoleic acid. It is a likely candidate gene to be causing the high oleic phenotype in mutant sunflower. The expression of OLD7 in developing seeds was greatly reduced in mutant as opposed to wildtype backcross-derived lines. The restriction fragment length polymorphism (RFLP) patterns suggest that OLD7 is duplicated and rearranged in mutant lines. Utilizing sunflower SAD gene sequences and 27 inbred lines, intron fragment length polymorphism (IFLP) markers were developed for automated genotyping. These IFLP markers with ~470 to ~850 bp in length had a mean PIC score of 0.414, versus 0.336 for DFLP markers, and 0.582 for SSCP markers. One and two nucleotide length polymorphisms were reliably detected in PCR fragments up to ~150 and ~680 bp, respectively. / Graduation date: 1998

The fungus responsible for the downy mildew disease, common on commercially grown sunflowers, is Plasmopara halstedii (Farlow) Berl. et de Toni, one of the Peronosporaceae in the Oomycetes, known to be soil borne and to infect via the roots. [...]

No description available.

No description available.

Several reports appear in the literature linking low temperature damage in plants with boron (B) deficiency and alleviation of low temperature injury with B application has been reported in some crops and trees. These results imply that low temperature might increase plant B requirements, beside the reduction of B uptake by plant roots, or that low B tissues might be more sensitive to cold temperature damage than B adequate tissues. In controlled experiments, it has been shown that low root zone temperature (RZT) induces B deficiency in cassava, a tropical root crop. Apart from this, there are few definitive detailed investigations on low temperature effects on B nutrition of plants, including temperate species which are more tolerant of low temperature. Winter oilseed rape (Brassica napus L.), a crop sensitive to low B supply, is a major crop in the middle and lower Yangtse river basin, China, where low B soils are widespread. Appearance of B deficiency in oilseed rape often coincides with cold weather during its winter and spring growth. However, the incidence and severity of B deficiency of oilseed rape plants and the efficacy of B fertilization varies from year to year and location to location in ways that are not explained simply by differences in cultivar, agronomy or soil B levels. Low temperature is probably one of the important environmental factors influencing growth and yield of oilseed rape in relation to B nutrition. Therefore,the objective of the studies in this thesis was to investigate mechanisms of low temperature effects on B nutrition of plants with emphasis on oilseed rape. Field and glasshouse experiments were carried out and the physiological basis of plant response to B at different air and root temperatures is discussed. A field experiment with oilseed rape cv. Zheyouyou 2 was carried out on a red soil (Hapludult, US Soil Taxonomy) with low B availability in Zhejiang province, China. Canopy covers made from transparent plastic sheets, which increased night temperatures by up to 1.5 oC around shoots for 15 days in early February, strongly increased shoot dry weight at all levels of B supply. Furthermore, covering plants increased shoot dry weight of B deficient plants without increasing their leaf B concentration. This suggests that internal B requirements were decreased by canopy covering, possibly due to higher temperatures within the canopy. Experiments conducted to investigate the effect of RZT (10 and 20ƒn oC) on oilseed rape cv. Hyola 42 response to B in solution culture, in summer and winter, showed that regardless of canopy conditions, low RZT (10 oC) promoted the distribution of shoot B towards the actively growing leaves, especially when B supply was low. At low B supply, B deficiency symptoms appeared later at 10 oC than 20 oC RZT and B concentrations in the youngest fully opened leaves (YOL) were higher in plants grown at RZT of 10 oC than that at 20 oC. Growth of plant dry weight (DW) was not affected by RZT in the summer but was greatly reduced at 10 oC than 20 oC in winter. In B adequate plants, shoot to root ratio (S/R ratio) was not affected by RZT regardless of canopy conditions. By contrast, S/R ratio was smaller in low B plants at 10 oC than 20 oC. In addition, low RZT delayed occurrence of plant B deficiency symptoms regardless of plants¡¦ pre-treatment RZT (either 10 or 20 oC). These results appeared to contradict the response to low RZT found in previous studies with cassava. In a subsequent experiment, low RZT of 5 oC not only greatly reduced plant DW production of oilseed rape, but also accentuated plant B deficiency. Partitioning of B into the young growing shoots was also depressed and a significant decrease of B concentration in the youngest shoot parts was caused by 5 oC RZT in comparison with that at the control RZT (10 oC). Similar results were also observed in sunflower (Helianthus annuus L. cv. Hysun 25). But B deficiency symptoms in sunflower were induced by RZT as high as 12 oC, when plants were supplied with 0.25 £gM B, whilst these plants were free from B deficiency at warmer RZT (17 - 27 oC). Higher external B concentrations were required at such RZT (Chilling temperature) for plant growth free from B deficiency. Therefore, there is a RZT threshold below which an increased response to B is expected in plants of oilseed rape and sunflower. And in the range of chilling RZT, the external B requirement for shoot growth increased with lower RZT. The threshold RZT was considerably higher in the chilling-sensitive plant species, sunflower, than in oilseed rape, a chilling-resistant plant species. At chilling RZT, leaf functioning was impaired by low B supply as measured by potassium (K) leakage from the youngest mature leaf blade (YML) of sunflower, whereas it was much less directly affected by RZT, and there was no effect of RZT on B- adequate plants. By contrast to leaves, root function was impaired more by chilling RZT than low B. Despite their different threshold RZT, in both oilseed rape and sunflower, the rates of B uptake (BUR) and B translocation from root to shoot (BTR) were dramatically depressed by chilling RZT especially at low B supply (0.2 £gM B): being only 30% of those at the control (5 oC vs 10 oC RZT) in oilseed rape and 33% (10 oC vs 20 oC RZT) in sunflower, respectively. By contrast, there was little or no difference over a range of warmer RZT (10 - 20 oC for oilseed rape, and 20 ¡V 27 oC for sunflower). It is predicted that higher rates of B application will be required for plant growth when soil temperature is below a critical threshold, which is between 5 and 10 oC for oilseed rape, and about 17 oC for sunflower, respectively. Below the threshold RZT plant B deficiency was induced and accentuated due to impairment of B translocation into growing shoot parts besides the decrease of B uptake rate and B transport rate and greater shoot to root ratio. In comparison with RZT, little is known about causal mechanisms linking cold air temperature and B nutrition. Experiments in this thesis showed not only B transport to the shoot was strongly reduced by low night air temperature during a 6 day period (11.719.4 vs 15.5 ¡V 23.5 oC), but also that an overnight chilling (at 0 oC) could cause more severe injury to low B than adequate B leaves of oilseed rape plants, expressed by higher solute leakage, in comparison with control (at 10 oC). Moreover, after chilling treatment, solute leakage from low B leaves was increased by exposure to light, which suggests that low temperature injury to leaves in low B plants after a freezing night in the field is at least partly a consequence of light induced damage of leaves. In summary, at chilling temperature, B uptake, transport and partitioning into growing shoots are strongly impaired, and B use efficiency in the growing tissues might be reduced as well. Low temperature contributes to plant B deficiency also by increasing S/R ratio, so that shoot B demand is not satisfied by available B. Furthermore, low air temperature might increase the internal B requirement for shoot growth. To further understand mechanisms of low temperature, especially the air temperature, effects on plant responses to B, more research is needed, such as the relationship between low temperature and B incorporation into cell walls which may play an important role in leaf tolerance to chilling temperature.

Thesis (M.S.)--University of Toledo, 2008. / Typescript. "Submitted as partial fulfillments of the requirements for The Master of Science in Biology." "A thesis entitled"--at head of title. Bibliography: leaves 35-40.

Thesis (M.Ed.)--Kutztown State College, 1972. / Source: Masters Abstracts International, Volume: 45-06, page: 3033. Typescript. Includes bibliographical references (leaves 24-25)