Bidentate ligands are a commonly used class of ligands in catalysis that generate highly-active and selective catalysts. Such bidentate ligands, however, often suffer from synthetic challenges, which can be alleviated by the use of simpler monodentate ligands that assemble through non-covalent interactions to mimic the structure of bidentate ligands at the metal center. To produce a strongly assembled catalyst complex, the Hamilton receptor motif was utilized. Hamilton receptors form six hydrogen bonds with complementary guests and have binding affinities for barbiturates of up to 104 M-1 in CDCl3. Complete bifurcation of the Hamilton scaffold produces a modular ligand structure that allows for modification of either end of the supramolecular ligand structure. Similarly, the barbiturate guest can be synthetically altered creating both chiral guests and guests with differing amounts of steric bulk. Both experimental titration data and density functional theory calculations show that steric bulk discourages binding of the guest while a pre-organized host encourages guest inclusion. Electronic effects on the bifurcated Hamilton system were studied by varying the electron donating or withdrawing ability of the benzamide moiety on the host molecule. Electron withdrawing moieties produce more acidic amide hydrogens on the host which are able to participate in stronger hydrogen bonds with the guest resulting in a stronger host-guest complex. The effects of substitutions on the barbiturate guest were examined as well, and increased steric bulk on the guest resulted in decreased affinities with the host. The bifurcated Hamilton receptor ligands were examined in the palladium-catalyzed Heck reaction of iodobenzene with butyl acrylate. Pd2(OAc)4 was used as a control and all reaction yields with the diphenylphosphine ligand-stabilized Pd were greater than or equal to those obtained with Pd2(OAc)4 alone. The reaction rates did not correlate with the determined binding constants, suggesting that phosphine substitution on the guest plays a larger role than affinity of the complex for the guest. Reaction temperatures were varied, and at lower temperatures the yields increased implying that the strength of the hydrogen bonds between the metal complex and the guest does play a secondary role in the catalysis. This dissertation includes previously published co-authored material.

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Les hémicryptophanes, molécules constituées d’une unité cyclotriveratrylène (CTV) reliée à un autre groupement de symétrie C3, sont des molécules cages qui trouvent de nombreuses applications dans le domaine de la chimie hôte-invité. Dans une première partie, ce manuscrit présente une revue des développements récents de la chimie des hémicryptophanes et définit les objectifs de ce travail de thèse.Nos travaux concernent principalement le design d'hémicryptophanes spécifiquement conçus pour la reconnaissance moléculaire de substrats d'intérêt. Ainsi, des structures variées d'hémicryptophanes ont été conçues comme capteur fluorescent du phosphate de choline, ou pour la reconnaissance de paire d'ions. Des hémicryptophanes hétéroditopiques originaux portant des unités tris(2-pyridylmethyl)amine (TPA) ont été synthétisés et présentent un grand intérêt pour des applications ultérieures en reconnaissance. Nous avons étudié la reconnaissance stéréosélective de saccharides avec des hémicryptophanes énantiopurs qui associent trois types de chiralité sur sept centres stéréogènes. Enfin, nous décrivons le mouvement de "respiration" moléculaire de cages énantiopures, enrichissant ainsi les rares applications des hémicryptophanes comme machines moléculaires.Des complexes du vanadium(V) des hémicryptophanes ont été développés comme catalyseurs efficaces dans des réactions de sulfoxydation et pour l'oxydation catalytique de lignines. Des dérivés azaphosphatrane d’hémicryptohanes ont été développés comme organocatalyseurs de la réaction de polymérisation par ouverture du lactide. La dernière partie de ce manuscript est consacrée à des développements nouveaux dans le domaine de la formation de cages par auto-assemblage. Nous avons réussi à former par coordination des tétraèdres dont les quatre faces comportent une sous-unité azaphosphatrane. Nous montrons pour la première fois que dans ce type de cage l’unité azaphosphatrane joue un rôle prépondérant dans la complexation d’anions. / In the wide area of host-guest chemistry, hemicryptophanes, a type of molecular cages combining a cyclotriveratrylene (CTV) unit with another different C3 symmetrical moiety, have received increasing attention. In a first part of this work, the advances in hemicryptophane chemistry have been thoroughly reviewed and the objectives of the thesis have been postulated. Our work mainly concerns the targeted molecular recognition by rational design of hemicryptophanes. Various hemicryptophane structures have been designed as fluorescent sensors for choline phosphate, or for ion-pairs recognition. Original heteroditopic hemicryptophanes bearing tris(2-pyridylmethyl)amine (TPA) units have been synthesized that present a great interest for further applications in molecular recognition. We investigated the stereoselective recognition of carbohydrates using enantiopure hemicryptophanes combining three classes of chirality on seven stereogenic units. At last, we described the breathing motion of a series of enantiopure cages, complementing the rare application of hemicryptophanes as molecular machines.Hemicryptophane vanadium(V) complexes, have been developed as efficient supramolecular catalysts for sulfoxidation and for the catalytic lignin oxidation. Azaphosphatrane-functionalized hemicryptophanes were developed as hydrogen-bonding organocatalysts for the ring-opening polymerization of lactide. Finally, my attention has opened to a more prospective view focusing on cages constructed by self-assembly, and we have demonstrated the feasibility of introducing azaphosphatrane moieties into tetrahedron capsules using subcomponent self-assembly, and also proved for the first time the utility of azaphosphatranes as anion binding moieties.

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Les objectifs de cette thèse sont articulés autour de deux axes principaux : la synthèse et l’étude de cages moléculaires photo-modulables, et la génération de nano-cristaux d’or par photo-catalyse supramoléculaire. Ces deux thématiques sont reliées entre elles par l’exploitation des propriétés photophysiques et photochimiques d’un motif commun, le 9,10-diphénylanthracène (DPA). Dans un premier temps, de nouvelles architectures tridimensionnelles photo-modulables de type cage moléculaire ont été conçues et étudiées. En présence d’oxygène, l’irradiation directe ou sensibilisée du DPA permet de former réversiblement le dérivé endoperoxyde et ainsi moduler les propriétés de complexation de la cage. Les différentes stratégies de synthèse mises en place reposent sur l’exploitation conjuguée de la réactivité de la 2,4,6-trichloro-1,3,5-triazine, et de réactions de chimie « click » (métathèse des oléfines, cycloaddition de Huisgen). L’étude et la modulation des propriétés des reconnaissances ont été effectuées sur des sels de cations alcalins (sodium et césium) et suivies par émission de fluorescence et spectroscopie d’absorption UV-visible. Les résultats obtenus avec deux cages possédant des constantes d'associations élevées (logK = 8,7 pour le cation sodium) montrent une augmentation de la constante d’association d’un facteur 10 et 20 pour respectivement le sodium et le césium entre la forme DPA et la forme endoperoxyde. Dans un second temps, des photocatalyseurs supramoléculaires basés sur le chromophore DPA ont été étudiés en vue de la synthèse de nano-cristaux d’or nus. L’association du chromophore avec des thioéthers permet de former un complexe en phase organique par extraction de sels d’or(III) depuis une phase aqueuse. L’irradiation à 400nm permet la réduction de l’or(III) par transfert d’énergie depuis le 9,10-diphénylanthracène. Les atomes d’or sont ensuite relargués en phase aqueuse pour former des nano-cristaux nus qui ont pu être caractérisés par MET, XPS, AFM et DLS. Par ailleurs, ce procédé est catalytique dans le toluène et un système de réduction en flux continu a été mis au point permettant un turnover moyen de 150. / The goals of this thesis are organized around two major axes: the synthesis and study of photo-gated molecular cages, and the generation of gold nanocrystals by supramolecular photocatalysis. These two themes are connected by the use of the photochemical and photophysical properties of a common chromophore, 9,10-diphenylanthracene (DPA). Three-dimensional photo-gated cage-like architectures were designed and synthesized. Various synthetic strategies based on the combined use of the 2,4,6-trichloro-1,3,5-triazine unit and "click" chemistry reactions (olefin metathesis, Huisgen cycloaddition) were employed for the synthesis. In the presence of oxygen, sensitized or direct irradiation of the DPA chromophore forms the corresponding endoperoxide derivative, thereby modulating the binding properties of the cage. The study and the modulation of the recognition properties were performed on various alkali metal cations and a strong binding of sodium and cesium was evidenced by fluorescence emission and UV-visible absorption spectroscopy. The cages investigated possessed high association constants towards sodium and cesium cations (logK = 8.7 for the sodium cation) which could be reversibly increased by a factor 10 and 20 for sodium and cesium, respectively, upon formation of the endoperoxide. Supramolecular photocatalysis of gold(III) reduction based on the DPA chromophore was also studied for the preparation of uncapped gold nanocrystals. The combination of the DPA chromophore with thioether chains allows the formation of a complex in the organic phase by extraction of gold(III) chloride from an aqueous phase. Irradiation at 400 nm enables the reduction gold(III) by energy transfer from the 9,10-diphenylanthracene followed by oxidation of the solvent. The gold atoms are subsequently released in the aqueous phase to form uncapped nanocrystals characterized using TEM, XPS, AFM, and DLS techniques. Furthermore, the process is catalytic in toluene, where a continuous flow reactor was developed. The latter allowed an average catalytic turnover of 150 to be determined.

La synthèse de molécules possédant une cavité présente un grand intérêt car ces dernières peuvent agir comme récepteurs moléculaires ou comme catalyseurs supramoléculaires et ainsi mimer l'activité des enzymes. Les hémicryptophanes possèdent ainsi des cavités dissymétriques complexes formées à partir d'une unité cyclotrivératrylène et d'une seconde unité de symétrie C3 et présentent des propriétés catalytiques et de reconnaissance particulièrement intéressantes.Les travaux effectués au cours de cette thèse reposent donc sur la synthèse de nouveaux hémicryptophanes et sur leur utilisation pour la reconnaissance moléculaire de composés biologiquement actifs et pour la catalyse supramoléculaire. A ce titre, différentes voies de synthèse ont été abordées et ont permis d'obtenir un panel de nouveaux récepteurs. Ces composés ont alors été appliqués dans un premier temps à la reconnaissance sélective de paires d'ions et de neurotransmetteurs zwitterioniques puis à la reconnaissance stéréosélective de sucres. Les propriétés complexantes de ces composés ont principalement été étudiées par spectroscopie RMN et à l'aide de calculs quantiques. Enfin, la synthèse de complexes supramoléculaires cuivre-hémicryptophane nous a permis de développer l'utilisation de ces composés pour la catalyse biomimétique d'oxydation des alcanes. / Molecular containers are very attractive as they can act as molecular receptors or supramolecular catalysts and so mimic biological entities such as enzymes. Hemicryptophanes are heteroditopic host molecules created from the association of a cyclotriveratrylene unit with another C3-symmetric moiety and which present interesting catalytic and recognition properties. During this thesis, we based our work on the synthesis of new hemicryptophanes and their application, first in molecular recognition of bioactive molecules and then in supramolecular catalysis. Different synthetic paths have been developed to obtain several new receptors. Their binding abilities have then been studied in selective recognition of ion pairs and neurotransmitters and in stereoselective recognition of carbohydrates. These works have been performed mainly thanks to NMR spectroscopy and quantum calculations. Finally, copper-hemicryptophane complexes have been synthesized and used as supramolecular catalysts in C-H oxidation of alkanes.

A atividade catalítica de clusters trigonais de acetato de rutênio e porfirinas supramoleculares contendo quatro unidades de clusters periféricos ou complexos de bis(bipiridina)rutênio, na oxidação de substratos orgânicos por iodosil-benzeno ou terc-butil-hidroperóxido, é abordada nesta tese. Foram feitos estudos cinéticos para elucidar o mecanismo de catálise, com especial destaque para duas espécies supramoleculares isoméricas representadas por Mn(3-TRPyP) ou Mn(4-TRPyP), nos quais os complexos de bis(bipiridina)(cloro)rutênio se coordenam à tetrapiridilporfirina através das posições meta ou para da ponte piridínica, respectivamente. Além da maior seletividade proporcionada pelos catalisadores supramoleculares, a substituição do íon cloreto pela água nos complexos periféricos de rutênio, intensificou a atividade catalítica, gerando novos sítios ativos, do tipo Ru(IV)=O. Também foram estudados clusters trinucleares de rutênio, altamente reativos, no estado Ru(III)Ru(IV)Ru(IV)=O. Estes foram gerados eletroquimicamente em solução aquosa, apresentando pronunciada atividade catalítica na oxidação do alcool benzílico. Finalmente, uma espécie dimérica de cluster, ainda inédita, com ponte oxo, foi caracterizada e investigada do ponto de vista catalítico. / The catalytic activity of trinuclear ruthenium clusters and supramolecular tetrapyridylporphyrins containing four peripheral cluster units or bis(bipyridine)ruthenium complexes, in the oxidation of organic substrates by iodosylbenzene or tert-butil-hydroperoxide, is dealt with in this thesis. Kinetic studies were performed in order to elucidate the mechanisms of catalysis involving two isomeric species denoted Mn(3-TRPyP) or Mn(4-TRPyP), in which the bis(bipyridine)(chloro)ruthenium complexes are bound to the tetrapyridylporphyrin center, at the meta or para positions of the pyridine bridge, respectively. In addition to the improved selectivity by such supramolecular catalysts, the substitution of the chloride ion by water in the peripheral ruthenium complexes, greatly enhanced their catalytic activity by generating new Ru(IV)=O reactive sites. Highly reactive trinuclear ruthenium clusters of the type Ru(III)Ru(IV)Ru(IV)=O were also generated electrochemically in aqueous solution, exhibiting pronounced catalytic activity in the oxidation of benzyl alcohol. Finally, a novel dimeric oxo-bridged cluster species was characterized, and its role in catalysis investigated.

Les proazaphosphatranes sont des entités phosphorées bicycliques superbasiques également connues sous le nom de superbases de Verkade et les azaphosphatranes constituent leurs acides conjugués. Les travaux de cette thèse porte sur l’étude des propriétés de ces molécules en milieu confiné. Premièrement, le confinement des superbases a été étudié au sein de structure de type hémicryptophane (molécules possédant des cavités dissymétriques formées à partir d’une unité cyclotrivératrylène et d’une seconde unité de symétrie C3). Une modulation de la basicité a pu être notamment observée dans les différentes structures étudiées possédant des tailles de cavité différentes par comparaison avec les superbases modèles dépourvues de cavité. L’activité catalytique d’une superbase encagée a pu être testée dans deux réactions de catalyse nucléophile et basique. Puis les azaphosphatranes, acides faibles aux stuctures robustes, jusque-là peu utilisés en organocatalyse ont été valorisés pour la synthèse de carbonates cycliques à partir d’époxydes et de dioxyde de carbone (CO2). Un effet sur la stabilité des catalyseurs encagés a pu être démontré. Enfin un catalyseur hétérogène a pu être mis au point par immobilisation d’un azaphosphatrane sur silice mésoporeuse de type SBA-15. / Proazaphosphatranes are highly reactive phosphorous bicyclic compounds also called Verkade’s superbases and the azaphosphatranes are their acidic counterparts. The goal of the work is to investigate the modifications of the properties of these compounds when they are in confined space. Firstly, the superbases were encapsulated into hemicryptophane host compounds (molecular containers created from the association of a cyclotriveratrylene unit with another C3-symmetric moiety). Modifications in the basicity of the supramolecular superbases depending on the substitution pattern around the phosphorous were evidenced compare to the molecules lacking the cavity. The catalytic activity of a superbase was investigated on a nucleophilic and a basic reaction. The azaphosphatranes were then used to catalyze the cycloaddition of carbon dioxide (CO2) to epoxides to form a cyclic carbonate. Enhancements of the stability of encaged catalyst were demonstrated. Finally, an azaphophatrane was immobilized on mesoporous silica leading to a heterogeneous catalyst.

A atividade catalítica de clusters trigonais de acetato de rutênio e porfirinas supramoleculares contendo quatro unidades de clusters periféricos ou complexos de bis(bipiridina)rutênio, na oxidação de substratos orgânicos por iodosil-benzeno ou terc-butil-hidroperóxido, é abordada nesta tese. Foram feitos estudos cinéticos para elucidar o mecanismo de catálise, com especial destaque para duas espécies supramoleculares isoméricas representadas por Mn(3-TRPyP) ou Mn(4-TRPyP), nos quais os complexos de bis(bipiridina)(cloro)rutênio se coordenam à tetrapiridilporfirina através das posições meta ou para da ponte piridínica, respectivamente. Além da maior seletividade proporcionada pelos catalisadores supramoleculares, a substituição do íon cloreto pela água nos complexos periféricos de rutênio, intensificou a atividade catalítica, gerando novos sítios ativos, do tipo Ru(IV)=O. Também foram estudados clusters trinucleares de rutênio, altamente reativos, no estado Ru(III)Ru(IV)Ru(IV)=O. Estes foram gerados eletroquimicamente em solução aquosa, apresentando pronunciada atividade catalítica na oxidação do alcool benzílico. Finalmente, uma espécie dimérica de cluster, ainda inédita, com ponte oxo, foi caracterizada e investigada do ponto de vista catalítico. / The catalytic activity of trinuclear ruthenium clusters and supramolecular tetrapyridylporphyrins containing four peripheral cluster units or bis(bipyridine)ruthenium complexes, in the oxidation of organic substrates by iodosylbenzene or tert-butil-hydroperoxide, is dealt with in this thesis. Kinetic studies were performed in order to elucidate the mechanisms of catalysis involving two isomeric species denoted Mn(3-TRPyP) or Mn(4-TRPyP), in which the bis(bipyridine)(chloro)ruthenium complexes are bound to the tetrapyridylporphyrin center, at the meta or para positions of the pyridine bridge, respectively. In addition to the improved selectivity by such supramolecular catalysts, the substitution of the chloride ion by water in the peripheral ruthenium complexes, greatly enhanced their catalytic activity by generating new Ru(IV)=O reactive sites. Highly reactive trinuclear ruthenium clusters of the type Ru(III)Ru(IV)Ru(IV)=O were also generated electrochemically in aqueous solution, exhibiting pronounced catalytic activity in the oxidation of benzyl alcohol. Finally, a novel dimeric oxo-bridged cluster species was characterized, and its role in catalysis investigated.