<p>Optical-CT has been shown to be a potentially useful imaging tool for for the two very different spheres of biologists and radiation therapy physicists, but it has yet to live up to that potential. In radiation therapy, researchers have used optical-CT for the readout of 3D dosimeters, but it is yet to be a clinically relevant tool as the technology is too slow to be considered practical. Biologists have used the technique for structural imaging, but have struggled with emission tomography as the reality of photon attenuation for both excitation and emission have made the images quantitatively irrelevant. </p><p><bold>Dosimetry.</bold> The DLOS (Duke Large field of view Optical-CT Scanner) was designed and constructed to make 3D dosimetry utilizing optical-CT a fast and practical tool while maintaining the accuracy of readout of the previous, slower readout technologies. Upon construction/optimization/implementation of several components including a diffuser, band pass filter, registration mount & fluid filtration system the dosimetry system provides high quality data comparable to or exceeding that of commercial products. In addition, a stray light correction algorithm was tested and implemented. The DLOS in combination with the 3D dosimeter it was designed for, PREAGETM, then underwent rigorous commissioning and benchmarking tests validating its performance against gold standard data including a set of 6 irradiations. </p><p>DLOS commissioning tests resulted in sub-mm isotropic spatial resolution (MTF >0.5 for frequencies of 1.5lp/mm) and a dynamic range of ~60dB . Flood field uniformity was 10% and stable after 45minutes. Stray light proved to be small, due to telecentricity, but even the residual can be removed through deconvolution. Benchmarking tests showed the mean 3D passing gamma rate (3%, 3mm, 5% dose threshold) over the 6 benchmark data sets was 97.3% ± 0.6% (range 96%-98%) scans totaling ~10 minutes, indicating excellent ability to perform 3D dosimetry while improving the speed of readout. Noise was low at ~2% for 2mm reconstructions. The DLOS/PRESAGE® benchmark tests show consistently excellent performance, with very good agreement to simple known distributions. The telecentric design was critical to enabling fast (~15mins) imaging with minimal stray light artifacts. The system produces accurate isotropic 2mm3 dose data over clinical volumes (e.g. 16cm diameter phantoms, 12 cm height), and represents a uniquely useful and versatile new tool for commissioning complex radiotherapy techniques. The system also has wide versatility, and has successfully been used in preliminary tests with protons and with kV irradiations.</p><p><bold>Biology.</bold> Attenuation corrections for optical-emission-CT were done by modeling physical parameters in the imaging setup within the framework of an ordered subset expectation maximum (OSEM) iterative reconstruction algorithm. This process has a well documented history in single photon emission computed tomography (SPECT), but is inherently simpler due to the lack of excitation photons to account for. Excitation source strength distribution, excitation and emission attenuation were modeled. The accuracy of the correction was investigated by imaging phantoms containing known distributions of attenuation and fluorophores. The correction was validated on a manufactured phantom designed to give uniform emission in a central cuboidal region and later applied to a cleared mouse brain with GFP (green-fluorescent-protein) labeled vasculature and a cleared 4T1 xenograft flank tumor with constitutive RFP (red-fluorescent-protein). Reconstructions were compared to corresponding slices imaged with a fluorescent dissection microscope. </p><p>Significant optical-ECT attenuation artifacts were observed in the uncorrected phantom images and appeared up to 80% less intense than the verification image in the central region. The corrected phantom images showed excellent agreement with the verification image with only slight variations. The corrected tissue sample reconstructions showed general agreement between the verification images. Comprehensive modeling in optical-ECT imaging was successfully implemented, creating quantitatively accurate 3D fluorophore distributions. This work represents the 1st successful attempt encompassing such a complete set of corrections. This method provides a means to accurately obtain 3D fluorophore distributions with the potential to better understand tumor biology and treatment responses.</p> / Dissertation

This diploma thesis tries to find the most suitable optical system for measuring deformation displacements on the surfaces of bodies. The first chapter describes the systems and methods that will be used. The second chapter is devoted to the design of the experiment. It describes the preparation of the experiment from the point of view of software and hardware and what are the important preliminary preparations. The last chapter contains the results of experiments and evaluation of the systems.

This thesis deals with optical design of f-theta lens for purposes of precision micromachining using a laser beam. Optical design consists of creating a nominal design according to specifications given by Meopta – optika s.r.o company and a tolerance analysis, which describes manufacturability of given design. Specifications given are most importantly diffraction limited image quality, correction of distortion throughout the field and telecentricity of systém in image space. F-theta lens in this thesis was created using an optical design software called Zemax.

Doctoral thesis is focused on a design of a new original image transition edge physical modeling method for exact object shape position determination. Automatic Optical Inspection systems for the high accuracy optical measurements is main application area for designed method. The new method design is based on precise physical analysis of a defined imaging system. Object side telecentric lens, telecentric backlight source and CCD video camera are main parts of the analyzed imaging system. New image transition edge physical model and method for accurate shape position detection within the model are derived by geometrical and Fourier optics imaging system analysis. Possible influences of the model parameters changes to the accuracy of shape position detection are studied precisely. A new modeling function suitable for implementation in a new optimal approximation method is derived from the physical transition edge model. The modeling function optimal approximation method is implemented in to a Tester2D measuring system and verified by length etalon measurements. The Tester2D measuring system was successfully accredited for dimensions measurement in range with accuracy up to . Documentation of results of the accreditation process with the record of obtained results from measurement system in scope of preformed interlaboratory comparison tests are appended to the doctoral thesis.

Les travaux présentés dans ce mémoire portent sur l'étude, la conception et le développement de deux nouveaux prototypes de reconstruction tridimensionnelle, spécifique aux objets transparents. La numérisation 3D d'objets opaques est abondamment traitée dans la littérature et de nombreux systèmes sont d'ailleurs commercialisés. Cependant, lorsqu'il s'agit de la numérisation 3D d'objets transparents, les publications se font rares et aucun système de scanning n'existe sur le marché. La technique de numérisation de surfaces transparentes demeure compliquée et non maîtrisée à l'heure actuelle. L'opacification de la surface avant le scanning s'avère être la solution retenue dans le domaine du contrôle qualité. Néanmoins, cette alternative n'est pas optimale en raison du coût de traitements et du manque de précision éventuellement engendré. Afin de solutionner les problèmes de la numérisation d'objets transparents, nous avons développé deux approches dites non conventionnelles en étendant les méthodes existantes (dans le visible) aux longueurs d'onde dans lesquelles les sujets apparaissent opaques (IR et UV). Les deux méthodes de mesure sans contact retenues sont : - la reconstruction par polarisation dans l'IR, en vue de s'affranchir des problèmes d'inter-réflexions; - le scanning par laser UV, pour satisfaire les contraintes industrielles (précision, rapidité et coût) tout en résolvant de manière efficace le problème de réfraction. La première approche est fondée sur la réflexion spéculaire de l'objet dans l'IR tandis que la seconde exploite la propriété de l'objet à fluorescer sous l'irradiation UV. L'inexistence des lentilles télécentriques dans l'IR nous a conduits à adapter la reconstruction par polarisation dans l'IR à l'aide d'une lentille non télécentrique. Pour ce faire, une méthode d'approximation du modèle orthographique a été développée et une méthode de validation visant à améliorer la précision des résultats a été en outre intégrée dans le processus de reconstruction après l'étape d'estimation des paramètres de Stokes. Nos résultats sont très satisfaisants et attestent la faisabilité de la reconstruction par polarisation dans l'IR. Quatre configurations de système de scanning par triangulation ont été déployées afin d'exploiter la propriété de fluorescence des objets transparents irradiés sous un rayonnement UV. Des expérimentations visant à caractériser la fluorescence induite à la surface des objets considérés et à vérifier l'éligibilité de notre approche ont été menées. Les mesures spectroscopiques nous ont permis d'élaborer des critères de "tracking" (détection et localisation) des points fluorescents en présence des bruits inhérents à l'acquisition. Nous avons également mis au point des méthodes de validation des paramètres du modèle de reconstruction 3D estimés lors de la calibration, permettant ainsi d'optimiser la configuration du système de scanning. Les méthodes de "tracking" et de validation ont contribué considérablement à l'amélioration de la précision des résultats. Par ailleurs, la précision obtenue n'a jamais été atteinte au regard de ce que l'on trouve dans la littérature. / Two non-conventional methods for the 3D digitization of transparent objects via non-contact measurement are reported in this thesis. 3D digitization is a well acknowledged technique for opaque objects and various commercial solutions based on different measurement approaches are available in the market offering different types of resolution at different prices. Since these techniques require a diffused or lambertian surface, their application to transparent surfaces fails. Indeed, rays reflected by the transparent surface are perturbed by diverse inter-reflections induced by the refractive properties of the object. Therefore, in industrial applications like quality control, the transparent objects are powder coated followed by their digitization. However, this method is expensive and can also produce inaccuracies. Among the rare methods suggested in the literature, shape from polarization provides reliable results even though their accuracy had to be improved by coping with the inter-reflections. The two proposed solutions handle the extension of the existing methods to wavelengths beyond visible ranges: - shape from polarization in Infra Red (IR) range to deal with the above-mentioned inter-reflections; - scanning by Ultra Violet (UV) laser (based on triangulation scheme) to overcome the refraction problem that can be feasibly applied in industrial applications. The characteristic physical properties of transparent objects led us to explore the IR and UV ranges; since, transparent glass has strong absorption bands in the IR and UV ranges and therefore has opaque appearance. The first approach exploits the specular reflection of the considered object surface in IR and the second one exploits the fluorescence property of the object when irradiated with UV rays. Shape from polarization traditionally based on telecentric lenses had to be adapted with non-telecentric lenses to be used in the IR range. Thus, an approximation of the orthographic model is developed in this thesis while a validation method is implemented and integrated in the reconstruction process after Stokes parameters estimation, in order to improve the accuracy of the results. Some results of digitized objects are presented, which prove the feasibility of the shape from polarization method in the IR range to be used for transparent objects. A total of four configurations of the triangulation system are implemented in this thesis to exploit fluorescence produced by the UV laser scanning of the second approach. Experimental investigations aimed at characterizing the fluorescence are done. A specific fluorescence tracking method is carried out to deal with the inherent noise in the acquisitions. The uniqueness of the method relies on the criteria that are derived from the analysis of spectroscopic results. A validation method is made to optimize the configuration system while reducing the accuracy of reconstruction error. The results of some object digitization are presented with accuracies better than previously reported works.