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Investigations of Non-Covalent Carbon Tetrel Bonds by Computational Chemistry and Solid-State NMR SpectroscopySouthern, Scott Alexander January 2016 (has links)
Non-covalent bonds are an important class of intermolecular interactions, which result in the ordering of atoms and molecules on the supramolecular scale. One such type of interaction is brought about by the bond formation between a region of positive electrostatic potential (σ-hole) interacts and a Lewis base. Previously, the halogen bond has been extensively studied as an example of a σ-hole interaction, where the halogen atom acts as the bond donor. Similarly, carbon, and the other tetrel elements can participate in σ-hole bonds. This thesis explores the nature of the carbon tetrel bond through the use of computational chemistry and solid state nuclear magnetic resonance (NMR) spectroscopy.
The results of calculations of interaction energies and NMR parameters are reported for a series of model compounds exhibiting tetrel bonding from a methyl carbon to the oxygen and nitrogen atoms in a range of functional groups. The ¹³C chemical shift (𝛿iso) and the ¹ᶜ𝐽(¹³C,¹⁷O/¹⁵N) coupling across the tetrel bond are recorded as a function of geometry. The sensitivity of the NMR parameters to the non-covalent interaction is demonstrated via an increase in 𝛿iso and in |¹ᶜ𝐽(¹³C,¹⁷O/¹⁵N)| as the tetrel bond strengthens. There is no direct correlation between the NMR trends and the interaction energy curves; the energy minimum does not appear to correspond to a maximum or minimum chemical shift or J-coupling value.
Gauge-including projector-augmented wave density functional theory (DFT) calculations of 𝛿iso are reported for crystals which exhibit tetrel bonding in the solid state. Experimental 𝛿iso values for sarcosine, betaine and caffeine and their tetrel-bonded salts generally corroborate the computational findings. This work offers new insights into tetrel bonding and facilitates the incorporation of tetrel bonds as restraints in NMR crystallographic structure refinement.
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Synthesis of silicon- and germanium-rich phases at high-pressure conditionsCastillo, Rodrigo 10 August 2016 (has links) (PDF)
The main focus of the present work was the Ge-rich part of the binary Ba – Ge system, in which by inspecting the behavior of the clathrate-I Ba8Ge43 under pressure, several new phases were found. The new phases in this system have the following compositions: BaGe3 (with two modifications), BaGe5, BaGe5.5 and BaGe6, therefore they are quite close in composition range: 75% - ~85% at. Ge.
Concerning the conditions required for the synthesis of each phase, several combinations of temperature and pressure were employed in order to find a stability range. It was possible to establish such a formation range for all phases. In some cases two phases were found for a given conditions and in many other cases three or more phases were found to coexist. Thus, the stability range of pressure and temperature for single phase formation turned out to be very narrow.
By inspecting of some structural features, for instance the interatomic distances, it is found that the average of the Ge – Ge distances change in line with the composition, i.e. the shorter contacts belong to BaGe6 while the longer distances are present in BaGe3 (both modification). An opposite trend is observed for the calculated density of each phase (neglecting the tI32 form of BaGe3): the lower density is found for BaGe3 and the denser compound is found to be BaGe6. Of course this is not coincidence, since due to the Ge content, BaGe6 has the largest molar mass. Similarly, by examining the density as a function of the interatomic distance. In such case, the denser compound is characterized by shorter Ge – Ge contacts, while the less dense phase holds the longest Ge – Ge contacts. This is in agreement with the building motifs within each crystal structure: columns in BaGe3 (open framework) passing through layers in BaGe5, ending in a three-dimensional network (closed framework) in BaGe6.
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Synthesis of silicon- and germanium-rich phases at high-pressure conditionsCastillo Rojas, Rodrigo Esteban Antonio 10 August 2016 (has links)
The main focus of the present work was the Ge-rich part of the binary Ba – Ge system, in which by inspecting the behavior of the clathrate-I Ba8Ge43 under pressure, several new phases were found. The new phases in this system have the following compositions: BaGe3 (with two modifications), BaGe5, BaGe5.5 and BaGe6, therefore they are quite close in composition range: 75% - ~85% at. Ge.
Concerning the conditions required for the synthesis of each phase, several combinations of temperature and pressure were employed in order to find a stability range. It was possible to establish such a formation range for all phases. In some cases two phases were found for a given conditions and in many other cases three or more phases were found to coexist. Thus, the stability range of pressure and temperature for single phase formation turned out to be very narrow.
By inspecting of some structural features, for instance the interatomic distances, it is found that the average of the Ge – Ge distances change in line with the composition, i.e. the shorter contacts belong to BaGe6 while the longer distances are present in BaGe3 (both modification). An opposite trend is observed for the calculated density of each phase (neglecting the tI32 form of BaGe3): the lower density is found for BaGe3 and the denser compound is found to be BaGe6. Of course this is not coincidence, since due to the Ge content, BaGe6 has the largest molar mass. Similarly, by examining the density as a function of the interatomic distance. In such case, the denser compound is characterized by shorter Ge – Ge contacts, while the less dense phase holds the longest Ge – Ge contacts. This is in agreement with the building motifs within each crystal structure: columns in BaGe3 (open framework) passing through layers in BaGe5, ending in a three-dimensional network (closed framework) in BaGe6.
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NMR Crystallographic Investigations of Group 14 σ-Hole Interactions: Tetrel BondsSouthern, Scott Alexander 12 April 2021 (has links)
The concept of noncovalent bonding has evolved over the last number of years to include a very interesting class of interactions that is analogous to hydrogen bonding, called σ-hole interactions. These result from the depletion of electrostatic charge on the opposite end of a covalent bond between an electron-withdrawing substituent and a bond donor atom, which resides in groups 14-17 of the periodic table. One of these interactions is the tetrel bond (TB), whereby the bond donor is a group 14 element (T=C, Si, Ge, Sn, Pb). This thesis's primary goal is to explore the solid-state NMR parameters arising from the formation of tetrel bonds. To this end, combined density functional theory (DFT) and experimental multinuclear solid-state NMR spectroscopic investigations are carried out on complexes featuring carbon, Pb(II) and tin tetrel bonds.
Firstly, solid-state NMR and computational approaches are used to examine a series of cocrystals formed from either caffeine or theophylline and several other small organic acceptor molecules. It is shown that the NMR response due to tetrel bond formation is detectible, but it can be hidden by other effects, including those of crystal packing. Careful analysis of NMR data alongside DFT calculations can reveal that the weak tetrel bond in these sorts of complexes increases the ¹³C chemical shift by 3-5 ppm.
Next, a study of five Pb(II) centres hemidirectionally coordinated by isonicotinoyl hydrazone ligands demonstrates that the ²⁰⁷Pb NMR response is highly sensitive to the Pb(II) coordination environment. The NMR data indicate that a tetrel bond can induce an NMR response corresponding to a coordination environment between hemidirectional and holodirectional character.
Finally, a series of organotin chloride donor molecules complexed with N-oxides and carboxylates, which feature short and linear tetrel bonds, are subjected to magic angle spinning (MAS) NMR experiments. The recorded data gives rise to a correlation between the tetrel bond length and both the experimental chemical shift and the ¹J(¹¹⁹Sn-³⁵Cl) coupling.
Throughout this thesis, it is demonstrated that the isotropic chemical shift, the principal components of the chemical shift tensor, and indirect spin-spin coupling can be used to probe and gain insights into the electronic environment at the tetrel bond. More importantly, this work is fundamental to rationalize NMR data while refining crystal structure data in NMR crystallographic approaches for compounds featuring tetrel bonds.
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Hochdruck–Hochtemperatur–Synthese und Charakterisierung tetrelreicher Seltenerdmetallverbindungen und Darstellung von Ba8Ga16±xGe30∓x mittels Spark–Plasma–SinterverfahrenMeier, Katrin 18 February 2013 (has links) (PDF)
In dieser Dissertation wird die Darstellung tetrelreicher Seltenerdmetall–Verbindungen in den Systemen SE:Tt (SE = La, Nd, Sm, Gd, Tb, Ho, Lu; Tt = Si, Ge) und die Charakterisierung ihrer Eigenschaften beschrieben. Diese Verbindungen, welche mittels der Hochdruck–Hochtemperatur–Methode dargestellt wurden, zeigen neuartige Verknüpfungsmuster in der Tetrel–Partialstruktur. Neben der Charakterisierung der Verbindungen hinsichtlich der thermischen Stabilität und der physikalischen Eigenschaften bei Normaldruck wurde bei den Germanium–reichen Seltenerdmetall–Verbindungen eine Untersuchung der Veränderungen der Kristallstruktur bei Variation des Drucks oder der Temperatur vorgenommen.
Die dargestellten Seltenerdmetall–Trisilicide SESi3 (SE = Gd, Ho, Lu) kristallisieren tetragonal isotyp zu YbSi3. LuSi3 zeigt Supraleitung mit Tc = 7.0 K. In den Systemen Gd–Si und SE–Ge (SE = La, Nd, Sm, Gd, Tb) wurden die Verbindungen GdSi5 und SEGe5 (SE = La, Nd, Sm, Gd, Tb) synthetisiert. Sie kristallisieren orthorhombisch isotyp zu LaGe5. Durch in–situ Röntgenbeugungsexperimente bei erhöhten Temperaturen kann die Existenz metastabiler Germanium–ärmerer Verbindungen SE2Ge9 (SE = Nd, Sm) nachgewiesen werden. Es handelt sich um Defektvarianten der Verbindungen SEGe5 (SE = Nd, Sm). Die strukturelle Verwandtschaft zum Aristotyp SEGe5 wird anhand einer Gruppe–Untergruppe–Beziehung aufgezeigt.
Eine alternative Synthesemethode zur Darstellung tetrelreicher Verbindungen mit Gerüststrukturen bei extremen Reaktionsbedingungen stellt das Spark–Plasma–Sinterverfahren (SPS) dar. Die Darstellung der Clathratphase Ba8Ga16±xGe30∓x (x = 0, 1) erfolgte mittels SPS aus den Precursoren BaGa2±x (x = 0, 0.125) und Germanium. Die Untersuchungen der thermoelektrischen Eigenschaften zeigen, dass durch Variation der nominellen Zusammensetzung sowohl n–leitende als auch p–leitende Eigenschaften erhalten werden können. / In this thesis the synthesis of tetrel–rich rare–earth metal compounds in the systems RE:Tt (RE = La, Nd, Sm, Gd, Tb, Ho, Lu; Tt = Si, Ge) and the characterization of their properties is described. These compounds, synthesized by means of high–pressure high–temperature method, show new structural motifs in the tetrel partial structure. The compounds were characterized with respect to their thermal stability and their physical properties at ambient pressure. In addition, the changes in the crystal structure of the germanium-rich rare–earth metal compounds by variation of pressure or temperature were investigated. The synthesized rare–earth trisilicides SESi3 (SE = Gd, Ho, Lu) crystallize tetragonal, isotypic to YbSi3. LuSi3 is a superconductor with Tc = 7.0 K. In the systems Gd–Si and SE–Ge (SE = La, Nd, Sm, Gd, Tb) the compounds GdSi5 and SEGe5 (SE = La, Nd, Sm, Gd, Tb) were synthesized. They crystallize orthorhombic isotypic to LaGe5. Using in-situ high–temperature X-ray experiments the metastable germanium-poorer compounds SE2Ge9 (SE = Nd, Sm) could be observed. These compounds are defect variants of the pentagermanides SEGe5 (SE = Nd, Sm). The structural relationship to the aristotype SEGe5 is given via a group-subgroup relation.
An alternative synthesis route for the preparation of tetrel–rich compounds with framework structures at extreme reaction conditions is the spark plasma sintering method (SPS). The clathrate phase Ba8Ga16±xGe30∓x (x = 0, 1) was synthesized from the precursors BaGa2±x (x = 0, 0.125) and germanium by means of SPS. The investigation of the thermoelectric properties shows, that through variation of the nominal composition both n-type and p-type conduction properties can be obtained.
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Hochdruck–Hochtemperatur–Synthese und Charakterisierung tetrelreicher Seltenerdmetallverbindungen und Darstellung von Ba8Ga16±xGe30∓x mittels Spark–Plasma–SinterverfahrenMeier, Katrin 29 October 2012 (has links)
In dieser Dissertation wird die Darstellung tetrelreicher Seltenerdmetall–Verbindungen in den Systemen SE:Tt (SE = La, Nd, Sm, Gd, Tb, Ho, Lu; Tt = Si, Ge) und die Charakterisierung ihrer Eigenschaften beschrieben. Diese Verbindungen, welche mittels der Hochdruck–Hochtemperatur–Methode dargestellt wurden, zeigen neuartige Verknüpfungsmuster in der Tetrel–Partialstruktur. Neben der Charakterisierung der Verbindungen hinsichtlich der thermischen Stabilität und der physikalischen Eigenschaften bei Normaldruck wurde bei den Germanium–reichen Seltenerdmetall–Verbindungen eine Untersuchung der Veränderungen der Kristallstruktur bei Variation des Drucks oder der Temperatur vorgenommen.
Die dargestellten Seltenerdmetall–Trisilicide SESi3 (SE = Gd, Ho, Lu) kristallisieren tetragonal isotyp zu YbSi3. LuSi3 zeigt Supraleitung mit Tc = 7.0 K. In den Systemen Gd–Si und SE–Ge (SE = La, Nd, Sm, Gd, Tb) wurden die Verbindungen GdSi5 und SEGe5 (SE = La, Nd, Sm, Gd, Tb) synthetisiert. Sie kristallisieren orthorhombisch isotyp zu LaGe5. Durch in–situ Röntgenbeugungsexperimente bei erhöhten Temperaturen kann die Existenz metastabiler Germanium–ärmerer Verbindungen SE2Ge9 (SE = Nd, Sm) nachgewiesen werden. Es handelt sich um Defektvarianten der Verbindungen SEGe5 (SE = Nd, Sm). Die strukturelle Verwandtschaft zum Aristotyp SEGe5 wird anhand einer Gruppe–Untergruppe–Beziehung aufgezeigt.
Eine alternative Synthesemethode zur Darstellung tetrelreicher Verbindungen mit Gerüststrukturen bei extremen Reaktionsbedingungen stellt das Spark–Plasma–Sinterverfahren (SPS) dar. Die Darstellung der Clathratphase Ba8Ga16±xGe30∓x (x = 0, 1) erfolgte mittels SPS aus den Precursoren BaGa2±x (x = 0, 0.125) und Germanium. Die Untersuchungen der thermoelektrischen Eigenschaften zeigen, dass durch Variation der nominellen Zusammensetzung sowohl n–leitende als auch p–leitende Eigenschaften erhalten werden können. / In this thesis the synthesis of tetrel–rich rare–earth metal compounds in the systems RE:Tt (RE = La, Nd, Sm, Gd, Tb, Ho, Lu; Tt = Si, Ge) and the characterization of their properties is described. These compounds, synthesized by means of high–pressure high–temperature method, show new structural motifs in the tetrel partial structure. The compounds were characterized with respect to their thermal stability and their physical properties at ambient pressure. In addition, the changes in the crystal structure of the germanium-rich rare–earth metal compounds by variation of pressure or temperature were investigated. The synthesized rare–earth trisilicides SESi3 (SE = Gd, Ho, Lu) crystallize tetragonal, isotypic to YbSi3. LuSi3 is a superconductor with Tc = 7.0 K. In the systems Gd–Si and SE–Ge (SE = La, Nd, Sm, Gd, Tb) the compounds GdSi5 and SEGe5 (SE = La, Nd, Sm, Gd, Tb) were synthesized. They crystallize orthorhombic isotypic to LaGe5. Using in-situ high–temperature X-ray experiments the metastable germanium-poorer compounds SE2Ge9 (SE = Nd, Sm) could be observed. These compounds are defect variants of the pentagermanides SEGe5 (SE = Nd, Sm). The structural relationship to the aristotype SEGe5 is given via a group-subgroup relation.
An alternative synthesis route for the preparation of tetrel–rich compounds with framework structures at extreme reaction conditions is the spark plasma sintering method (SPS). The clathrate phase Ba8Ga16±xGe30∓x (x = 0, 1) was synthesized from the precursors BaGa2±x (x = 0, 0.125) and germanium by means of SPS. The investigation of the thermoelectric properties shows, that through variation of the nominal composition both n-type and p-type conduction properties can be obtained.
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