<p dir="ltr">The field of nanoclusters includes a broad range of sizes and structures that influence both their physical and chemical properties. Scientists use several techniques, such as atom-by-atom substitution, to synthesize atomically precise nanoclusters, and ligand shell mixing to protect nanoclusters from unwanted side reactions, while controlling their reactivity and solubility. These combined techniques can provide stable products, but isomers and structural analogs often remain in the product mixture, complicating the structural characterization of individual nanoclusters. Leading structural characterization techniques in nanocluster research are often limited in their ability to examine both the structure of the metal core and ligand shell in sufficient detail. The primary aim of this research is to systematically characterize the structures and chemical properties of several types of transition metal oxide nanoclusters of interest to applications in energy production, catalysis, and magnetic resonance imaging, without requiring purification. Specifically, this work focuses on 1) Polyoxovanadates (POV) with a mixture of methoxy, ethoxy, and ether ligands, 2) Fe- and W-substituted POV alkoxides, and 3) Octanuclear iron oxide clusters substituted with In atoms. Mass spectrometry techniques enable the structural characterization of individual clusters from multicomponent mixtures without interference. Specifically, we use ion mobility spectrometry to explore how surface ligands affect the metal core in mixed-ligand POV alkoxide species. We examine structure-specific fragments to identify the positions of ligands and heteroatoms within the metal core of mixed-ligand species and W and Fe-substituted POV methoxides. Additionally, we use ion soft-landing to purify W-substituted POV methoxide anions on surfaces for characterization using cyclic voltammetry and infrared spectroscopy. We discovered unique characteristics of each nanocluster including the position of heteroatoms, ligands shell mobilities, structures and collisional cross sections, and provided first insights into the redox properties of W-substituted POV alkoxide. These results highlight the growing influence of mass spectrometry in the field of nanocluster characterization and design.</p>