Methods for determining phosphorus in turbid lake and river water using heating with an autoclave or a microwave and employing alkaline peroxodisulphate digestion have been investigated. Suspensions (up to 100 ugP/L) of two standard reference materials (NIES No. 3 Chlorella and NEES No. 2 Pond Sediment) were used to optimised procedures. Quantitative recoveries of phosphorus were achieved when the final solution to be digested contained 0.045 M potassium peroxodisulphate and 0.04 M sodium hydroxide and solutions were autoclaved at 120°C for 60 min. or microwaved at 450 Watts for 5-10 min. Complete recoveries of phosphorus (99- 103%) from 20 ugP/U 50 ugP/L and 100 ugP/L Chlorella suspensions were obtained using autoclave and microwave heating. For the Pond Sediment suspensions complete recoveries of phosphorus (99-104%) from the 20 ugP/L and 50 ugP/L were obtained using both heating methods. Higher recoveries from the 100 u.gP/L Pond Sediment suspensions were obtained using microwave heating (96±1%) than autoclaving (88±5%). Further analysis of Pond Sediment suspensions using the autoclave heating showed that complete recovery of phosphorus (98±l%) from 60 ngP/L suspensions was achieved with incomplete recoveries (92.3±0.7%, 91�2% and 91�1%) from 70 ugP/L, 80 ugP/L and 90 ug P/L suspensions respectively. Recoveries of phosphorus compounds (orthophosphate and phosphonates) added to distilled water and turbid lake water were near quantitative (91-117%) for both digestion methods. A range of turbid lake and river water (TP = 57-106 ugP/L; Turbidity = 16-200 NTU) were analysed for total phosphorus (TP) using the optimised alkaline peroxodisulphate digestion procedures and the APHA AWWA WPCF, sulphuric acid - nitric acid digestion procedure. No difference in total phosphorus measurements were found between the microwave digestion procedure and the APHA AWWA WPCF, nitric acid - sulphuric acid procedure. The autoclave procedure gave significantly lower recoveries of phosphorus (p<0.01), however, differences were only 2-8%. The effect of freezing (-20�C) water samples without or with the addition of 1% hydrochloric acid before determination of total phosphorus (TP) and total dissolved phosphorus (TDP) was also investigated. No significant change in total phosphorus occurred when samples were stored frozen without the addition of 1% hydrochloric acid in high and low density polyethylene bottles for up to 20 weeks and 2 weeks respectively after collection. Significant changes were found in total dissolved phosphorus when samples were stored frozen without the addition of 1% hydrochloric acid in high and low density polyethylene bottles after 1 day and 2 weeks respectively.

The increasing use of visible and near infrared light in therapeutic and diagnostic techniques has created a need to model its propagation in tissue. One of the fundamental objectives of such a model is the noninvasive evaluation of the optical properties of tissue. The focus of this thesis was the development of the diffusion approximation in the semi-infinite, slab, cylindrical and spherical geometries. This development required the derivation of approximate boundary conditions which included the zero, extrapolated and partial current boundary conditions. Calculations of the fluence and its related quantities arising from the extrapolated boundary condition were found to be in excellent agreement with the results of the more rigorous partial current boundary condition. A preliminary evaluation of the validity of diffusion theory was performed by comparing its predictions to exact analytical calculations of the fluence in an infinite medium as well as Monte Carlo simulations of the reflectance and transmittance in 1-dimensional planar geometries. In all cases the agreement at late times was excellent. A practical test of the diffusion model was accomplished with the analysis of the reflectance data from a phantom of known optical properties in both the semi-infinite and slab geometries. The model performed well at low concentrations of added absorber, but a considerable discrepancy was found at the highest concentration. A systematic examination of the accuracy of the diffusion model as a function of the fundamental parameters is required to resolve this inconsistency. Approximate expressions describing the equivalent information in the frequency domain were also developed for a semi-infinite medium. These expressions were then used to analyze the phase and modulation obtained from phantoms of known optical properties. Once again reasonable results were obtained at low concentrations of added absorber while a significant discrepancy arose at the highest concentration. The resolution of these discrepancies requires further investigation. / Thesis / Master of Engineering (ME)

A holographic recording method using an optical heterodyne 2-D scanning technique for 3-D imaging of fluorescent objects in turbid media is described and experimentally demonstrated. For the first time, 3-D imaging of fluorescentobjects in turbid media by a holographic method is achieved, and the diffused photon rejecting process through a heterodyne technique is analyzed. We also propose and realize a multiplexing and a digital decoding method for removing twin-image noise in optical scanning holography. The holographic method studied can be applied to 3-D biomedical imaging of fluorescent objects in turbid media as well as diffusely reflecting objects. / Master of Science

Avhandlingen behandlar de teoretiska och praktiska aspekterna av att använda spektrala vinkelupplösta reflektansmätningar för optisk karakterisering av fiberbaserade material såsom papper och kartong. En spektral goniofotometer används för att mäta det reflekterade ljusets vinkelfördelning. En stor del av arbetet utgörs av att utvärdera instrumentets noggrannhet, samt utreda hur de vinkelupplösta mätningarna skall utföras på bästa sätt för att erhålla en så fullständig karakterisering som möjligt. Det reflekterade ljuset består av tre komponenter; ytreflektans, bulkreflektans samt fluorescens. En fullständig karakterisering förutsätter att dessa tre komponenter kan analyseras separat, vilket i detta arbete görs genom nyutvecklade metoder. En metod har utvecklats för separation av ytreflektans och bulkreflektans. Metoden bygger på att analysera hur den totala reflektansen förändras vid ökande absorption i det reflekterande materialet. Absorptionen kontrolleras genom inkjet-tryckning där tryckfärg appliceras på substratet i sådan mängd att bulkreflektansen helt släcks ut. Genom att kombinera mätningar på tryckt och otryckt substrat kan de båda komponenterna separeras. Trots att ytreflektansen från ett matt papper är liten i förhållande till bulkreflektansen, så visar resultaten att den ökar markant med ökande betraktningsvinkel och kan därmed ha stor inverkan på den totala reflektansen. Bidraget från fluorescens kan kvantitativt analyseras genom att kombinera mätningar utförda med respektive utan UV-filter. Vinkelupplösta mätningar och Monte Carlo-simuleringar av fluorescensens vinkelfördelning visar att dess anisotropi är relaterad till det medeldjup vid vilket fluorescensen emitteras. Resultaten förklarar observerade skillnader och motstridigheter i tidigare rapporterade studier kring huruvida fluorescens kan anses vara Lamberskt fördelad. Samtliga goniofotometriska mätningar är utförda med ett kompakt, kommersiellt tillgängligt, dubbelstråleinstrument. För att undersöka instrumentets lämplighet för absoluta reflektansmätningar utförs en analys av dess mätnoggrannhet. Resultaten visar att instrumentets kompakta storlek i kombination med den anisotropa reflektansen från papper introducerar systematiska fel av samma storleksordning som den totala mätnoggrannheten. Dessa fel uppstår på grund av den relativt stora detektorapertur som måste användas vid mätningar av diffus reflektans, vilket är karakteristiskt för papper och kartong. Resultaten visar även att felen är störst vid flacka mätvinklar och för prover med hög grad av anisotropisk reflektans, och en geometrisk korrektionsmetod för denna typ av systematiska fel föreslås. Spektrala och vinkelupplösta mätningar medför per automatik stora mängder mätdata. Genom att använda strålningstransportteori som en matematisk modell för hur ljus sprids i papper kan mätdatat reduceras till en uppsättning beskrivande materialparameterar. Att uppskatta dessa optiska parametrar utifrån vinkelupplösta reflektansmätningar är i sig ett komplicerat problem, vilket dessutom är känsligt för mätfel och val av mätvinklar. Detta inversa problem analyseras i detalj, och speciellt hur valet av mätvinklar kan reduceras utan att försämra förutsättningarna för estimeringen. Simuleringar visar att mätningarna kan begränsas till infallsplanet, eller till och med enbart framåtriktningen, så länge tillräckligt flacka mätvinklar är inkluderade i mätsekvensen. / This thesis is about measuring and modelling light reflected from paper by using goniophotometric measurements. Measuring bidirectional reflectance requires highly accurate instruments, and a large part of the work in this thesis is about establishing the requirements that must be fulfilled to ensure valid data. A spectral goniophotometer is used for measuring the light reflected from paper and methods are developed for analyzing the different components, i.e. the fluorescence, surface reflectance and bulk reflectance, separately. A separation of the surface and bulk reflectance is obtained by inkjet printing and analyzing the total reflectance in the absorption band of the ink. The main principle of the method is to add dye to the paper until the bulk scattered light is completely absorbed. The remaining reflectance is solely surface reflectance, which is subtracted from the total reflectance of the undyed sample to give the bulk reflectance. The results show that although the surface reflectance of a matte paper is small in comparison with the bulk reflectance, it grows rapidly with increasing viewing angle, and can have a large influence on the overall reflectance. A method for quantitative fluorescence measurements is developed, and used for analyzing the angular distribution of the fluoresced light. The long-standing issue whether fluorescence from turbid (or amorphous) media is Lambertian or not, is resolved by using both angle-resolved luminescence measurements and radiative transfer based Monte Carlo simulations. It is concluded that the degree of anisotropy of the fluoresced light is related to the average depth of emission, which in turn depends on factors such as concentration of fluorophores, angle of incident light and the absorption coefficient at the excitation wavelength. All measurements are conducted with a commercially available benchtop sized double-beam spectral goniophotometer designed for laboratory use. To obtain reliable results, its absolute measurement capability is evaluated in terms of measurement accuracy. The results show that the compact size of the instrument, combined with the anisotropic nature of reflectance from paper, can introduce significant systematic errors of the same order as the overall measurement uncertainty. The errors are related to the relatively large detection solid angle that is required when measuring diffusely reflecting materials. Situations where the errors are most severe, oblique viewing angles and samples with high degree of anisotropic scattering, are identified, and a geometrical correction is developed. Estimating optical properties of a material from bidirectional measurements has proved to be a challenging problem and the outcome is highly dependent on both the quality and quantity of the measurements. This problem is analyzed in detail for optically thick turbid media, and the study targets the case when a restricted set of detection angles are available. This is the case when e.g. an unobstructed view of the sample is not possible. Simulations show that the measurements can be restricted to the plane of incidence (in-plane), and even the forward direction only, without any significant reduction in the precision or stability of the estimation, as long as sufficiently oblique angles are included.

Laboratory studies conducted at 5, 15, 25, and 35 C measured changes in gilling rates and oxygen consumption of green sunfish in response to exposure to bentonite clay suspensions. The tests indicate that gilling rates are not affected by bentonite clay suspensions below 2125 FTU at 5 C, 1012 FTU at 15 C, and 898 FTU at 25 C. At turbidity levels exceeding 1012 FTU at 15 C and 898 at 25 C, gilling rates increased 50-70%. Tests were inconclusive at 35 C. Oxygen consumption rates were found to be unaffected by turbid suspensions below 3500 FTU at all four temperatures. Evidence suggests that increased gilling rates under highly turbid conditions are a means of compensating for reduced respiratory efficiency and a strategy for maintaining a constant oxygen uptake. Evidence indicates that the cost of increased gilling rates is probably met by a reduction in activity.

Lateral light scattering in fibrous media is investigated by computing the modulation transfer function (MTF) of 22 paper samples using a Monte Carlo model. The simulation tool uses phase functions from infinitely long homogenous cylinders and the directional inhomogeneity of paper is achieved by aligning the cylinders in the plane. The inverse frequency at half maximum of the MTF is compared to both measurements and previous simulations with isotropic and strongly forward single scattering phase functions. It is found that the conical scattering by cylinders enhances the lateral scattering and therefore predicts a larger extent of lateral light scattering than models using rotationally invariant single scattering phase functions. However, it does not fully reach the levels of lateral scattering observed in measurements. It is argued that the hollow lumen of a wood fiber or dependent scattering effects must be considered for a complete description of lateral light scattering in paper. / PaperOpt

Modeling of light propagation through turbid (highly-scattering) media such as living tissue is important for a number of medical applications including diagnostics and therapeutics. This thesis studies methods of performing such simulations quickly and accurately. It begins with a formal definition of the problem, a review of solution methods, and an overview of the current state of the art in fast simulation methods encompassing both traditional software and more specialized hardware acceleration approaches (GPU, custom logic). It introduces FullMonte, the fastest mesh-based Monte Carlo software model available and highlights its novel optimiza- tions. Additionally, it demonstrates the first fully three-dimensional hardware simulator using Field-Programmable Gate Array (FPGA) custom logic, offering large (40x) power-efficiency and performance (3x) gains. Next, a plan for significant future feature enhancements and performance scale-out is sketched out. Lastly, it proposes applying the simulators developed to a number of problems relevant to current clinical and research practice.

Modeling of light propagation through turbid (highly-scattering) media such as living tissue is important for a number of medical applications including diagnostics and therapeutics. This thesis studies methods of performing such simulations quickly and accurately. It begins with a formal definition of the problem, a review of solution methods, and an overview of the current state of the art in fast simulation methods encompassing both traditional software and more specialized hardware acceleration approaches (GPU, custom logic). It introduces FullMonte, the fastest mesh-based Monte Carlo software model available and highlights its novel optimiza- tions. Additionally, it demonstrates the first fully three-dimensional hardware simulator using Field-Programmable Gate Array (FPGA) custom logic, offering large (40x) power-efficiency and performance (3x) gains. Next, a plan for significant future feature enhancements and performance scale-out is sketched out. Lastly, it proposes applying the simulators developed to a number of problems relevant to current clinical and research practice.

Striped bass larvae, native to the Shubenacadie River, catch invertebrates in darkness using mechanoreception via lateral line neuromasts. The neuromast total increased from 17 at first feeding (5 to 7 dph) to 135 by the juvenile stage (27 dph). A 5 mM neomycin dose ablated neuromasts, confirmed by fluorescent and confocal microscopy. In feeding trials, larvae with and without functional neuromasts were offered Artemia salina in darkness or light. To identify ontogenetic changes in feeding, experiments were repeated at 10, 13, 17, and 20 dph. In darkness, neomycin treated larvae caught fewer prey (~5 Artemia h-1 at all ages, p<0.05) than larvae with intact neuromasts (10 dph, 16 Artemia h-1; 20 dph, 72 Artemia h-1). In light, neomycin did not affect feeding, indicating no deleterious side-effects. Neomycin did not damage olfactory or taste cells judged by FM1-43FX and calretinin staining. The results support the contribution of mechanoreception to non-visual feeding. / Master's thesis

Abstract This thesis is devoted to methods of analyzing optical spectra obtained from turbid liquids, i.e., liquids that are optically very thick and/or scatter light. Data for spectral analysis were obtained with a new, multifunction spectrophotometer developed for industrial liquid samples. One characteristic of the spectrophotometer is that spectral analysis methods can be implemented into the software. Here, the emphasis was on data inversion methods, particularly the Kramers-Kronig analysis and the maximum entropy method, which can be used to gain information on the wavelength-dependent complex refractive index of liquid samples. Relating to such characteristics as density and colour, the complex refractive index also helps to identify the species that form a liquid. The methods were applied to study the internal reflection of light from the prism-liquid interface of the probe and to analyze surface plasmon resonance spectra. This study provided new methods of investigating the optical properties of relatively difficult objects, like offset inks, and of assessing adhesion forces between ink and the substrate system. Another important part of the thesis was the exploration of spectral analysis methods to obtain optical properties of nanoparticles in a liquid matrix. Bounds for the optical properties of multi-component structures in a liquid were considered with the aid of Wiener bounds.