Freshwater resources are increasingly subject to pollution because of escalating human population growth, accompanied by urbanisation, industrialisation, and the increased demand for food. Consequently, freshwater quality, and aquatic ecosystem structure and function have been severely impaired. The Swartkops River, which drains an urbanised and industrialised catchment in the Eastern Cape of South Africa, is no exception. An integrated environmental water quality (EWQ) approach is needed to measure the impacts of deteriorating water quality on its aquatic ecosystem structure and function to sustain these vital ecosystem-attributes. In this study, an integrated EWQ approach, which included i) analysis of water physico-chemical variables; ii) macroinvertebrate-based family-level taxonomic- and traits-based community analysis; iii) Chironomidae species-level taxonomic- and traits-based community analysis; iv) Chironomidae deformity-based sub-lethal analysis; and v) experimental investigation of long-term wastewater effluent effects, using model stream ecosystems, were applied to investigate environmental water quality in the Swartkops River. One upstream reference site and three downstream sites in the Swartkops River were monitored over a period of three years (August 2009 – September 2012). The family-level taxonomic community responses based on the South African Scoring System version 5 (SASS5) and a newly developed Swartkops multimetric index indicated very poor river health conditions for the three downstream sites, compared with the good condition of the upstream site. The Chironomidae species-level responses in the three downstream sites provided evidence of differences in biotic impairments, which were not evident with the family-level taxonomic data at these sites, thus highlighting the importance of species identification in freshwater biomonitoring. The family-level traits-based approach (TBA) showed that macroinvertebrates with gills and lungs were more abundant at the upstream site, decreasing markedly at the downstream sites. The relative abundance of macroinvertebrates relying on aerial and tegument respiration increased at the downstream sites compared with the upstream sites. The results of the family-level TBA highlighted the inextricable link between the traits-based approach (TBA) and taxonomic identification, clearly showing that the TBA is additional to, and not an alternative to, taxonomic recognition because important traits, e.g. reproductive cannot be used at a coarse taxonomic identification. A novel chironomid species traits-based functional strategies approach developed in this study, based on species combining similar sets of traits, proved sensitive in diagnosing the main abiotic water physico-chemical stressors. The functional traits responded predictably to deteriorating water quality and provided an adaptive and mechanistic basis for interpreting chironomid species occurrences at the four sampling sites, providing insight into why certain chironomid species occurred at one site but not at the other. Chironomid deformities provided evidence of sub-lethal in-stream biological response to deteriorating water quality. A newly developed deformity-based extended toxic score index proved sensitive, enabling the discrimination of the sampling sites, indicating that a biomonitoring tool based on sub-lethal effects could be used to assess the effects of deteriorating water quality before it reached lethal levels. Empirical evidence based on the taxonomic, traits and sub-lethal responses suggested that the changes in macroinvertebrate community structure were caused chiefly by the discharge of wastewater effluents into the river. This was supported by the model-stream ecosystem results indicating significant effects of effluents on the macroinvertebrate community structure, similar to the observed in-stream responses. The model stream results indicated that improved physico-chemical effluent quality compliance after 50% effluent dilution did not significantly reduce the effects of the effluent on the macroinvertebrate communities, showing that ecologically-based methods rather than physico-chemical measures alone are necessary to assess effluent quality. Finally, the results of the multi-criteria approach were integrated to propose tools to manage environmental water quality in the Swartkops River, and the benefits of the study were highlighted in the context of biomonitoring in South Africa.

Decreasing surface water quality in South Africa has become an issue of concern as the population grows, industrial and agricultural activities expand, and environmental pollution increases. Wastewater treatment plants and other anthropogenic activities are liable for releasing raw and inadequately treated effluents into the surface water. Extensive pollution accompanied by the use of disinfectants, pesticides, and other chemical pollutants has been attributed to increased antimicrobial resistance in bacteria such as Escherichia coli in surface water, increasing environmental antibiotic resistance spread. The research aimed to determine water quality and prevalence of antibiotic-resistant bacteria in Naauwpoortspruit River, eMalahleni, Mpumalanga Province. Five sampling sites were selected along the Naauwpoortspruit River and monitoring was done for seven consecutive months. Samples were collected and analysed for physicochemical, microbiological parameters, and susceptibility profile of antibiotic-resistant bacteria using standard methods. Pearson correlation analysis was used to assess the path and strength of the relationship between physicochemical and microbiological parameters in the study area. Results of physicochemical and microbial parameters showed variation throughout the selected study sites. The results revealed a pH range of 4.45 – 7.9 and electrical conductivity levels range of 58.63 - 113.3 mS/m for the different sampling sites during the study period with lower levels detected during the winter period and higher levels in the summer period. Also, water samples showed a high total dissolved solids levels range of 381.1 – 736.45 mg/L and biochemical oxygen demand range of 67.1 – 168 mg/L for the different sampling sites during the study period. The Naauwpoortspruit River had higher levels of ammonia of 33.4 mg/L at Point A during the winter period as compared to 15 mg/L in the summer period. Heavy metals results showed that mercury range of 0.01 – 0.065 mg/L and copper range of 0.001 – 0.0035 mg/L were not compliant with aquatic ecosystem guidelines at all selected sites throughout the study period. The foremost finding of this study was that E. coli were present in all the selected sites at concentrations (>100 cfu/100ml). Elevated concentrations of 5.4 x 103 and 4.2 x 103 cfu/100ml for the total and faecal indicator bacteria were detected from sites downstream to 2.2 x103 and 2.35 x103 cfu/100ml for sites upstream river, in the rainy months. During the dry season, total coliforms, and faecal coliforms concentration of 0.4 x103 to 0.65 x 103 cfu/100ml were detected downstream and 0.25 x 103 and 0.5 x 103 cfu/100ml from upstream, respectively. The physicochemical and microbiological parameters measured at selected sites exceeded acceptable limits and proved unsuitable for applications such as full and intermediate recreational activities, and aquatic ecosystems. The variation in physicochemical parameters results was influenced by both natural processes and human activities such as salinity and Acid Mine Drainage (AMD) within the Naauwpoortspruit River. Using the Kirby-Bauer disc diffusion method, E. coli and faecal coliforms were tested for resistance to antibiotics; ampicillin (10 μg/ml), kanamycin (30 μg), streptomycin (30 μg), chloramphenicol (30 μg), erythromycin (15 μg), ox tetracycline (30 μg), erythromycin (15 μg/ml) and norfloxacin (10 μg). More than 60% of faecal coliform were resistant to at least four of the tested antibiotics and between 60 - 80% of the E. coli isolates were resistant to β lactam. The highest microbial antibiotic resistance (MAR) index value was observed at Site D (0.38 for E. coli) which showed multi-antibiotic resistance. Site D is characterized by wastewater treatment, power generation industries, and agriculture activities. The highest level of MAR observed at Site D indicates the need to control extensive pollution and constantly monitor the changing trends in antimicrobial resistance patterns of these waterborne pathogens. Statistical analysis showed that the development of microbiological parameters loads has a strong correlation with physicochemical parameters due to the association of sampling sites in the river environment. This study shows that the aquatic ecosystem needs constant monitoring to establish their conditions, impacts of pollution activities within the catchment, and input information into sustainable management of the water resources. / Environmental Sciences / M. Sc. (Environmental Science)

Department of Hydrology and Water Resources / PhDH

MPH / Department of Public Health / See the attached abstract below

MSc (Zoology) / Department of Zoology / Many chemicals released into the environment are believed to disrupt normal endocrine functions in humans and animals. These endocrine disrupting chemicals (EDCs) affect reproductive health and development. A major group of EDCs that could be responsible for reproductive effects are those that mimic natural oestrogens, known as xeno-oestrogens. A number of in vivo and in vitro screening strategies are being developed to identify and classify xeno-oestrogens, in order to determine whether they pose a health risk to humans and animals. It is also important to be able to apply the assays to environmental samples for monitoring purposes. Oestrogens and androgens mediate their activity via intracellular receptors – directly in muscular tissue as well as indirectly via stimulation of growth hormones from the pituitary glands and other growth factors from liver plus several other organs. Mancozeb is a metal ethylenebisdithiocarbamate (EBDC) fungicide used to protect many fruits and vegetables and field crops against pathogenic fungal. It causes a variety of defects on the female reproductive system in experimental animals and is therefore considered a suspected EDC. This fungicide can also induce toxic effects in cells of the immune system and other non-immune cells leading to genotoxicity and apoptosis. The mechanisms of EDCs involve divergent pathways including (but not limited to) oestrogenic, antiandrogenic, thyroid receptors; that are highly conserved in wildlife and humans, and which can be modelled in laboratory in vitro and in vivo models. The endocrine disrupting properties of Mancozeb are not known as of yet and therefore the T47D-KBluc reporter gene assay, GH3.TRE-Luc and MDA-kb2 reporter gene assay were used determine the possible endocrine disrupting activity/potential there-of. No activity was detected in any of the assays and no mancozeb was detected in any of the dams either. Oestrogenic activity was detected in Albasini Dam, Nandoni Dam and Xikundu weir but all values were below 0.7 ng/ℓ trigger value for oestrogenic activity in drinking water. / NRF

MPH / Department of Public Health / Water quality of drinking water has been linked to good health outcomes across the world. The aim of this study was to assess physico-chemical, bacteriological, community practices regarding collection and storage of water and evaluation of human health risk characteristics of drinking water supplied by the government to Lufule village in Thulamela municipality, Limpopo Province, South Africa A cross-sectional study was conducted using questionnaires and interviews to determine drinking water handling practices and levels of contamination between the source and point-of-use at household. Assessment of water quality was carried out on 114 samples from selected sampling points using scientifically approved protocols. Total coliform was determined in 62.5% and 87.5% of the samples during the dry and wet seasons respectively. Similarly, E. coli was determined in 10.4 % and 13.2% in the dry and wet seasons, respectively. Trace metals levels in the drinking water samples were analysed and were within permissible range of both SANS and WHO. The calculated non-carcinogenic effects using hazard quotient toxicity potential, cumulative hazard index and chronic daily intake of drinking water through ingestion pathways were less than one unity, which showed that consumption of the water could pose little or no significant health risk. The results of this research suggest that lead has the potential of cancer risk to the residents through the cumulative ingestion in the drinking water samples of the studied area. Therefore, precaution needs to be taken to avoid potential risk of people in Lufule area especially, children. / NRF