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Fast algorithms for sequence data searching.

by Sze-Kin Lam. / Thesis (M.Phil.)--Chinese University of Hong Kong, 1997. / Includes bibliographical references (leaves 71-76). / Abstract --- p.i / Acknowledgement --- p.iii / Chapter 1 --- Introduction --- p.1 / Chapter 2 --- Related Work --- p.6 / Chapter 2.1 --- Sequence query processing --- p.8 / Chapter 2.2 --- Text sequence searching --- p.8 / Chapter 2.3 --- Numerical sequence searching --- p.11 / Chapter 2.4 --- Indexing schemes --- p.17 / Chapter 3 --- Sequence Data Searching using the Projection Algorithm --- p.21 / Chapter 3.1 --- Sequence Similarity --- p.21 / Chapter 3.2 --- Searching Method --- p.24 / Chapter 3.2.1 --- Sequential Algorithm --- p.24 / Chapter 3.2.2 --- Projection Algorithm --- p.25 / Chapter 3.3 --- Handling Scaling Problem by the Projection Algorithm --- p.33 / Chapter 4 --- Sequence Data Searching using Hashing Algorithm --- p.37 / Chapter 4.1 --- Sequence Similarity --- p.37 / Chapter 4.2 --- Hashing algorithm --- p.39 / Chapter 4.2.1 --- Motivation of the Algorithm --- p.40 / Chapter 4.2.2 --- Hashing Algorithm using dynamic hash function --- p.44 / Chapter 4.2.3 --- Handling Scaling Problem by the Hashing Algorithm --- p.47 / Chapter 5 --- Comparisons between algorithms --- p.50 / Chapter 5.1 --- Performance comparison with the sequence searching algorithms --- p.54 / Chapter 5.2 --- Comparison between indexing structures --- p.54 / Chapter 5.3 --- Comparison between sequence searching algorithms in coping some deficits --- p.55 / Chapter 6 --- Performance Evaluation --- p.58 / Chapter 6.1 --- Performance Evaluation using Projection Algorithm --- p.58 / Chapter 6.2 --- Performance Evaluation using Hashing Algorithm --- p.61 / Chapter 7 --- Conclusion --- p.66 / Chapter 7.1 --- Motivation of the thesis --- p.66 / Chapter 7.1.1 --- Insufficiency of Euclidean distance --- p.67 / Chapter 7.1.2 --- Insufficiency of orthonormal transforms --- p.67 / Chapter 7.1.3 --- Insufficiency of multi-dimensional indexing structure --- p.68 / Chapter 7.2 --- Major contribution --- p.68 / Chapter 7.2.1 --- Projection algorithm --- p.68 / Chapter 7.2.2 --- Hashing algorithm --- p.69 / Chapter 7.3 --- Future work --- p.70 / Bibliography --- p.71

Identiferoai:union.ndltd.org:cuhk.edu.hk/oai:cuhk-dr:cuhk_322674
Date January 1997
ContributorsLam, Sze-Kin., Chinese University of Hong Kong Graduate School. Division of Computer Science and Engineering.
Source SetsThe Chinese University of Hong Kong
LanguageEnglish
Detected LanguageEnglish
TypeText, bibliography
Formatprint, x, 76 leaves : ill. ; 30 cm.
RightsUse of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0/)

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