Faculty of Science;
School of Chemistry;
PhD Thesis / ortho-Ethoxy-trans-cinnamic acid (OETCA) has been known to form three polymorphs - the α , β and γ polymorphs which crystallize in P1 (Z=2), R3 (Z=18) and C2/c (Z=8), respectively. These polymorphs have long been of interest from polymorphism and solid-state photoreactivity perspectives but have, until now, never been fully characterized.
In this thesis the complete structures of these polymorphs and their photodimerization products are presented. In addition, a new polymorph, the α' polymorph [P1 (Z=6)], which is only obtainable from the α polymorph via a reversible solid-state phase transformation at 60 °C, has been discovered and characterised.
In all the polymorphs of OETCA, the smallest building component is the hydrogen-bonded carboxylic acid R22(8) dimers. These dimers further aggregate via CH...O interactions to form a ribbon motif in the α , α' and γ polymorph structures. Structural and solid-state reactivity differences in these three polymorphs are therefore due to differences in the arrangement of these ribbons.
With few exceptions, solid state [2+2] photodimerization reactions have been found to obey the topochemical principle. Such reactions occur with minimal structural movement in which the contact distance between reacting double bonds is between 3.5 and 4.2 Å. In this respect the solid-state reactivity of both the α and α' polymorphs is especially interesting and unusual, and indicate that significant movement - both molecular and structural - is possible and necessary for reactions to occur in these polymorphs. Both polymorphs yield the centrosymmetric dimer product 2,2' diethoxy-α-truxillic acid. Photodimerization in the layered structure of the α polymorph, where the double bond contact distance is at 4.54 Å beyond reasonable photodimerization distance, is probably initially enabled by crystal defects. While the α' polymorph is structurally very similar to the α polymorph it is instead composed of two reaction sites with double bond contact distances of 3.72 and 4.99 Å, respectively. This polymorph's solid-state reactivity has as a consequence been found to be temperature dependent, with only 66.7% conversion being achieved at 293 K and 100% conversion occurring at 343 K; reaction at 343 K involves both a significant conformation change in a reaction product as well as a heat and reaction driven phase change. In the γ polymorph the closest distance between the double bonds is 5.26 Å, which together with the structural rigidity imposed by its herring bone structure ensures that no photodimerization occurs.
The β polymorph is really a solvate containing either benzene or thiophene within channels in the structure. The interactions between the solvent and OETCA molecules play an important role in maintaining the symmetry and integrity of the structure. The thiophene and benzene forms of the β polymorph are isomorphous and yield a mirror product (2,2'-diethoxy-β-truxinic acid) upon photodimerization - the molecules involved being related by a 4.0 Å translation along the unit cell c axis.
| Identifer | oai:union.ndltd.org:netd.ac.za/oai:union.ndltd.org:wits/oai:wiredspace.wits.ac.za:10539/1487 |
| Date | 27 October 2006 |
| Creators | Fernandes, Manuel Antonio |
| Source Sets | South African National ETD Portal |
| Language | English |
| Detected Language | English |
| Type | Thesis |
| Format | 408128 bytes, 222066 bytes, 120981 bytes, 1593933 bytes, 1700805 bytes, 834250 bytes, 1678084 bytes, 876825 bytes, 1142364 bytes, 8253240 bytes, 366181 bytes, 1743843 bytes, 1672708 bytes, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf, application/pdf |
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