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Molecular authentication of leigongteng and molecular cladistics of the subfamily tripterygioideae in celastraceae.

Law Ka Yee. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2006. / Includes bibliographical references (leaves 214-225). / Abstracts in English and Chinese. / ACKNOWLEDGEMENTS --- p.I / ABSTRACT --- p.II / TABLE OF CONTENTS --- p.VII / LIST OF FIGURES --- p.X / LIST OF TABLES A --- p.XII / APPENDIX --- p.XIII / Chapter CHAPTER ONE --- LITERATURE REVIEW --- p.1 / Chapter 1.1 --- Chinese herbs --- p.1 / Chapter 1.1.1 --- Introduction --- p.1 / Chapter 1.1.2 --- Leigongteng --- p.2 / Chapter 1.1.2.1 --- Leigongteng and its importance --- p.2 / Chapter 1.1.2.2 --- Chemical components and pharmacological effects of Leigongteng --- p.4 / Chapter 1.1.3 --- Problems in authentication of Leigongteng --- p.5 / Chapter 1.1.3.1 --- Taxonomic problems of Tripterygium --- p.5 / Chapter 1.1.3.2 --- Confusion caused by other species --- p.7 / Chapter 1.1..3.3 --- Adulterants --- p.9 / Chapter 1.2 --- Celastraceae --- p.10 / Chapter 1.2.1 --- Introduction --- p.10 / Chapter 1.2.2 --- Controversial taxonomic issue --- p.12 / Chapter 1.2.1.1 --- Subfamilies of Celastraceae --- p.12 / Chapter 1.2.1.2 --- Subfamily Tripterygioideae --- p.13 / Chapter 1.3 --- Molecular authentication --- p.14 / Chapter 1.4 --- Molecular systematics --- p.18 / Chapter 1.4.1 --- DNA sequence markers --- p.19 / Chapter 1.4.2 --- Molecular phylogeny --- p.25 / Chapter 1.4.2.1 --- Tree-building method --- p.25 / Chapter 1.4.2.2. --- Measures of support --- p.28 / Chapter 1.5 --- Objectives --- p.29 / Chapter CHAPTER TWO --- MATERIALS AND METHODS --- p.31 / Chapter 2.1 --- Plant and herb samples --- p.31 / Chapter 2.2 --- DNA extraction --- p.41 / Chapter 2.2.1 --- Modified CTAB extraction --- p.41 / Chapter 2.2.2 --- Commercial kit extraction --- p.42 / Chapter 2.3 --- Polymerase chain reaction (PCR) condition --- p.43 / Chapter 2.4 --- DNA gel electrophoresis --- p.44 / Chapter 2.5 --- PCR product purification --- p.45 / Chapter 2.5.1 --- GEL-M´ёØ gel extraction system --- p.45 / Chapter 2.6 --- Ligation and transformation --- p.46 / Chapter 2.6.1 --- Ligation and transformation --- p.46 / Chapter 2.6.2 --- Cell cultivation --- p.47 / Chapter 2.6.3 --- Plasmid extraction --- p.47 / Chapter 2.7 --- Determination of DNA concentration --- p.49 / Chapter 2.8 --- Cycle sequencing --- p.49 / Chapter 2.9 --- Sequence analysis --- p.50 / Chapter 2.10 --- Materials preparation --- p.51 / Chapter CHAPTER THREE --- MOLECULAR AUTHENTICATION OF LEIGONGTENG --- p.54 / Chapter 3.1. --- Authentication based on internal transcribed spacer (ITS) region --- p.54 / Chapter 3.1.1 --- Sequence alignment --- p.54 / Chapter 3.1.2 --- ITS region nucleotide differences significant in authentication of Leigongteng --- p.55 / Chapter 3.1.3 --- Relationship of samples --- p.70 / Chapter 3.1.4 --- Comparison of sequences --- p.75 / Chapter 3.2 --- Authentication based on 5s-rDNA region --- p.78 / Chapter 3.2.1 --- Sequence alignment --- p.78 / Chapter 3.2.2 --- 5s-rDNA nucleotide differences significant in authentication of Leigongteng --- p.78 / Chapter 3.2.3 --- Relationship of samples --- p.88 / Chapter 3.2.4 --- Comparison of sequences --- p.90 / Chapter 3.3 --- Authentication based on psbA-trnH region --- p.93 / Chapter 3.3.1 --- Sequence alignment --- p.93 / Chapter 3.3.2 --- psbA-trnH nucleotide differences significant in authentication of Leigongteng --- p.101 / Chapter 3.3.3 --- Relationship of samples --- p.113 / Chapter 3.3.4 --- Comparison of sequences --- p.115 / Chapter 3.4 --- Authentication based on trnL-F region --- p.118 / Chapter 3.4.1 --- Sequence alignment --- p.118 / Chapter 3.4.2 --- trnL-F region nucleotide differences significant in authentication of Leigongteng --- p.121 / Chapter 3.4.3 --- Relationship of samples --- p.139 / Chapter 3.4.4 --- Comparison of sequences --- p.141 / Chapter 3.5 --- Discussion --- p.144 / Chapter 3.5.1 --- Molecular markers --- p.144 / Chapter CHAPTER FOUR --- PHYLOGENETIC STUDIES ON TRIPTERYGIUM --- p.151 / Chapter 4.1 --- Combine loci of ITS and 5s-rDNA regions --- p.152 / Chapter 4.1.1 --- Homogenity test --- p.152 / Chapter 4.1.2 --- Sequence alignment --- p.152 / Chapter 4.1.3 --- Phylogenetic study --- p.173 / Chapter 4.2 --- psbA-trnH region --- p.174 / Chapter 4.2.1 --- Sequence alignment --- p.174 / Chapter 4.3 --- Discussion --- p.177 / Chapter CHAPTER FIVE --- PHYLOGENETIC STUDIES ON TRIPTERYGIOIDEAE AND CELASTRACEAE --- p.191 / Chapter 5.1 --- ITS regions --- p.191 / Chapter 5.1.1 --- Sequence alignment --- p.191 / Chapter 5.1.2 --- Phylogenetic analysis --- p.205 / Chapter 5.2 --- Discussion --- p.206 / Chapter 5.2.1 --- Subfamily Tripterygioideae --- p.206 / Chapter 5.2.2 --- Subfamilies of Celastraceae --- p.210 / Chapter CHAPTER SIX --- CONCLUSION --- p.212 / BILBIOGRAPHY --- p.214

Identiferoai:union.ndltd.org:cuhk.edu.hk/oai:cuhk-dr:cuhk_325489
Date January 2006
ContributorsLaw, Ka Yee., Chinese University of Hong Kong Graduate School. Division of Biology.
Source SetsThe Chinese University of Hong Kong
LanguageEnglish, Chinese
Detected LanguageEnglish
TypeText, bibliography
Formatprint, xiii, 225 leaves : ill. (some col.) ; 30 cm.
RightsUse of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0/)

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