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An Algorithm to Recognize Multi-Stable Behavior From an Ensemble of Stochastic Simulation Runs

Synthetic biological designers are demanding tools to help with the design and verifica- tion process of new biological models. Some of the most common tools available aggregate multiple simulation results into one “clean” trajectory that hopefully is representative of the system’s behavior. However, for systems exhibiting multiple stable states, these techniques fail to show all the possible trajectories of the system. This work introduces a method capable of detecting the presence of more than one “typical” trajectory in a system, which can also be integrated with other available simulation tools.

Identiferoai:union.ndltd.org:UTAHS/oai:digitalcommons.usu.edu:etd-3038
Date01 December 2013
CreatorsMonzon, Eduardo
PublisherDigitalCommons@USU
Source SetsUtah State University
Detected LanguageEnglish
Typetext
Formatapplication/pdf
SourceAll Graduate Theses and Dissertations
RightsCopyright for this work is held by the author. Transmission or reproduction of materials protected by copyright beyond that allowed by fair use requires the written permission of the copyright owners. Works not in the public domain cannot be commercially exploited without permission of the copyright owner. Responsibility for any use rests exclusively with the user. For more information contact Andrew Wesolek (andrew.wesolek@usu.edu).

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