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Treatment of 1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene (DDE) by an edible fungus Pleurotus pulmonarius.

Chan Kam Che. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2006. / Includes bibliographical references (leaves 199-219). / Abstracts in English and Chinese. / Acknowledgements --- p.i / Abstracts --- p.iii / 摘要 --- p.v / Contents --- p.vii / List of figures --- p.xiv / List of tables --- p.xix / Abbreviations --- p.xxii / Chapter Chapter I --- Introduction --- p.1 / Chapter 1.1 --- Persistent organic pollutants --- p.1 / Chapter 1.2 --- DDT and DDE --- p.2 / Chapter 1.2.1 --- Background --- p.2 / Chapter 1.2.2 --- Health effects --- p.4 / Chapter 1.2.3 --- Environmental exposure of DDE --- p.4 / Chapter 1.2.4 --- Level of DDE in human --- p.9 / Chapter 1.2.5 --- Biodegradation of DDE --- p.10 / Chapter 1.3 --- Remediation methods --- p.11 / Chapter 1.3.1 --- Physical/ chemical treatment --- p.11 / Chapter 1.3.2 --- Bioremediation --- p.13 / Chapter 1.4 --- Fungal Bioremediation --- p.14 / Chapter 1.5 --- Ligninolytic enzymes --- p.15 / Chapter 1.5.1 --- Laccase --- p.15 / Chapter 1.5.2 --- Peroxidases --- p.20 / Chapter 1.5.2.1 --- Manganese Peroxidase (MnP) --- p.20 / Chapter 1.5.2.1 --- Lignin Peroxidase (LiP) --- p.24 / Chapter 1.6 --- Cultivation of Pleurotus pulmonarius --- p.27 / Chapter 1.7 --- Enzyme technology on environmental cleanup and its limitation --- p.28 / Chapter 1.8 --- Aims and objectives of this study --- p.29 / Chapter Chapter II --- Materials and Methods --- p.30 / Chapter 2.1 --- Organism and growth conditions --- p.30 / Chapter 2.2 --- Cultivation and the expression of the ligninolytic enzyme-coding genes during solid-state-fermentation of edible mushroom Pleurotus pulmonarius --- p.30 / Chapter 2.3 --- Treatment of DDE by living P. pulmonarius --- p.31 / Chapter 2.3.1 --- Optimization of DDE removal in broth system --- p.31 / Chapter 2.3.1.1 --- Effects of initial DDE concentration on the removal of DDE --- p.32 / Chapter 2.3.1.2 --- Effects of inoculum size on the removal of DDE --- p.33 / Chapter 2.3.1.3 --- Effects of incubation time on the removal of DDE and transcriptional profiles of the ligninolytic enzyme-coding genes --- p.33 / Chapter 2.3.2 --- Optimization of DDE removal in soil system --- p.34 / Chapter 2.3.2.1 --- Effects of initial DDE concentration on the removal of DDE --- p.34 / Chapter 2.3.2.2 --- Effects of inoculum size on the removal of DDE --- p.35 / Chapter 2.3.2.3 --- Effects of incubation time on the removal of DDE --- p.35 / Chapter 2.3.2.4 --- Transcription of the ligninolytic enzyme-coding genes --- p.35 / Chapter 2.4 --- Treatment of DDE by 1st SMC of p. pulmonarius grown on straw-based compost --- p.36 / Chapter 2.4.1 --- Optimization of DDE removal in soil system --- p.36 / Chapter 2.5 --- Treatment of DDE by crude enzyme preparations of P. pulmonarius grown on straw-based compost --- p.36 / Chapter 2.5.1 --- Optimization of DDE removal in broth system --- p.36 / Chapter 2.5.1.1 --- Effects of initial DDE concentration on the removal of DDE --- p.37 / Chapter 2.5.1.2 --- Effects of amounts of crude enzyme preparations on the removal of DDE --- p.37 / Chapter 2.5.1.3 --- Effects of incubation time on the removal of DDE --- p.37 / Chapter 2.5.2 --- Optimization of DDE removal in soil system --- p.37 / Chapter 2.5.2.1 --- Effects of initial DDE concentration on the removal of DDE --- p.38 / Chapter 2.5.2.2 --- Effects of amount of crude enzyme preparations on the removal of DDE --- p.38 / Chapter 2.5.2.3 --- Effects of incubation time on the removal of DDE --- p.38 / Chapter 2.6 --- Soil characterization --- p.39 / Chapter 2.6.1 --- Identification of organic contaminants in soil sample from Gene Garden using Gas Chromatography/Mass Spectrometry (GC/MS) --- p.39 / Chapter 2.6.2 --- Determination of soil texture --- p.42 / Chapter 2.6.3 --- Fresh soil/air-dried sample moisture --- p.44 / Chapter 2.6.4 --- "Soil pH, electrical conductivity & salinity" --- p.44 / Chapter 2.6.5 --- Total organic carbon contents --- p.44 / Chapter 2.6.6 --- Total nitrogen and total phosphorus --- p.44 / Chapter 2.6.7 --- Available nitrogen --- p.45 / Chapter 2.6.8 --- Available phosphorus --- p.45 / Chapter 2.6.9 --- Potassium value --- p.46 / Chapter 2.7 --- Quantification of residual DDE level --- p.47 / Chapter 2.7.1 --- Preparation of DDE stock solution --- p.47 / Chapter 2.7.2 --- Extraction and quantification of DDE using Gas Chromatography with Electron Capture Detector (GC/μECD) --- p.47 / Chapter 2.7.3 --- Identification of DDE breakdown products by GC/MS --- p.50 / Chapter 2.8 --- Extraction of protein and ligninolytic enzymes --- p.53 / Chapter 2.8.1 --- Protein assay --- p.53 / Chapter 2.8.2 --- Laccase assay --- p.53 / Chapter 2.8.3 --- Manganese peroxidase assay --- p.54 / Chapter 2.8.4 --- Calculation of activity and specific activity of laccase and manganese peroxidase --- p.54 / Chapter 2.9 --- Estimation of fungal biomass --- p.55 / Chapter 2.9.1 --- Preparation of ergosterol standard solution --- p.56 / Chapter 2.9.2 --- Analysis of ergosterol content --- p.56 / Chapter 2.10 --- Expression of the ligninolytic enzyme-coding genes --- p.58 / Chapter 2.10.1 --- Preparation of ribonuclease free reagents and apparatus --- p.58 / Chapter 2.10.2 --- RNA isolation and purification --- p.58 / Chapter 2.10.3 --- cDNA synthesis --- p.59 / Chapter 2.10.4 --- Semi-quantification of ligninolytic enzyme-coding gene expression by RT-PCR --- p.59 / Chapter 2.11 --- Preparation of crude enzyme preparations from P. pulmonarius compost --- p.63 / Chapter 2.12 --- "Assessment criteria: removal efficiency, RE, and removal capacity, RC" --- p.63 / Chapter 2.13 --- Statistical analysis “ --- p.64 / Chapter Chapter III --- Results --- p.65 / Chapter 3.1 --- Soil characterization --- p.65 / Chapter 3.2 --- Cultivation and the expression of the ligninolytic enzyme-coding genes during solid-state-fermentation of edible mushroom Pleurotus pulmonarius --- p.66 / Chapter 3.2.1 --- Mushroom yield --- p.66 / Chapter 3.2.2 --- Protein content --- p.66 / Chapter 3.2.3 --- Specific ligninolytic enzymes activities --- p.66 / Chapter 3.2.4 --- Ergosterol content --- p.69 / Chapter 3.2.5 --- Ligninolytic enzymes productivities --- p.69 / Chapter 3.2.6 --- Expression of the ligninolytic enzyme-coding genes during solid-state-fermentation --- p.72 / Chapter 3.3 --- Treatment of DDE by living P. pulmonaruis --- p.78 / Chapter 3.3.1 --- Optimization of DDE removal in broth system --- p.78 / Chapter 3.3.1.1 --- Effects of initial DDE concentration on the removal of DDE --- p.78 / Chapter 3.3.1.1.1 --- Effects of DDE on biomass development --- p.78 / Chapter 3.3.1.1.2 --- Protein content --- p.78 / Chapter 3.3.1.1.3 --- Specific ligninolytic enzyme activities --- p.78 / Chapter 3.3.1.1.4 --- Ligninolytic enzyme productivities --- p.79 / Chapter 3.3.1.1.5 --- DDE removal and removal capacity --- p.79 / Chapter 3.3.1.2 --- Effects of inoculum sizes on the removal of DDE --- p.84 / Chapter 3.3.1.2.1 --- Effects of DDE on biomass development --- p.84 / Chapter 3.3.1.2.2 --- Protein content --- p.84 / Chapter 3.3.1.2.3 --- Specific ligninolytic enzyme activities --- p.85 / Chapter 3.3.1.2.4 --- Ligninolytic enzyme productivities --- p.85 / Chapter 3.3.1.2.5 --- DDE removal and removal capacity --- p.85 / Chapter 3.3.1.3 --- Effects of incubation time on the removal of 4.0 mM DDE/g biomass --- p.89 / Chapter 3.3.1.3.1 --- Effects of DDE on biomass development --- p.89 / Chapter 3.3.1.3.2 --- Protein content --- p.89 / Chapter 3.3.1.3.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.89 / Chapter 3.3.1.3.4 --- DDE removal and removal capacity --- p.90 / Chapter 3.3.1.3.5 --- Putative degradation derivatives --- p.90 / Chapter 3.3.1.3.6 --- Expression of the ligninolytic enzyme-coding genes during the removal of 4.0 mM DDE/g biomass --- p.94 / Chapter 3.3.1.4 --- Effects of incubation time on the removal of 10.0 mM DDE/g biomass --- p.100 / Chapter 3.3.1.4.1 --- Effects of DDE on biomass development --- p.100 / Chapter 3.3.1.4.2 --- Protein content --- p.100 / Chapter 3.3.1.4.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.100 / Chapter 3.3.1.4.4 --- Expression of the ligninolytic enzyme-coding genes during the removal of 10.0 mM DDE/g biomass --- p.102 / Chapter 3.3.2 --- Optimization of DDE removal in soil system --- p.107 / Chapter 3.3.2.1 --- Effects of initial DDE concentration on the removal of DDE --- p.107 / Chapter 3.3.2.1.1 --- Ergosterol content --- p.107 / Chapter 3.3.2.1.2 --- Protein content --- p.107 / Chapter 3.3.2.1.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.107 / Chapter 3.3.2.1.4 --- DDE removal and removal capacity --- p.108 / Chapter 3.3.2.2 --- Effects of inoculum sizes on the removal of DDE --- p.111 / Chapter 3.3.2.2.1 --- Ergosterol content --- p.111 / Chapter 3.3.2.2.2 --- Protein content --- p.111 / Chapter 3.3.2.2.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.111 / Chapter 3.3.2.2.4 --- DDE removal and removal capacity --- p.112 / Chapter 3.3.2.3 --- Effects of incubation time on the removal of DDE --- p.115 / Chapter 3.3.2.3.1 --- Ergosterol content --- p.115 / Chapter 3.3.2.3.2 --- Protein content --- p.115 / Chapter 3.3.2.3.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.115 / Chapter 3.3.2.3.4 --- DDE removal and removal capacity --- p.116 / Chapter 3.3.2.3.5 --- Putative degradation derivatives --- p.116 / Chapter 3.3.2.4 --- Transcription of the ligninolytic enzyme-coding genes --- p.121 / Chapter 3.4 --- Treatment of DDE by 1st SMC of p. pulmonarius grown on straw-based compost --- p.127 / Chapter 3.4.1 --- Optimization of DDE removal in soil system --- p.127 / Chapter 3.4.1.1 --- Effects of initial DDE concentration on the removal of DDE --- p.127 / Chapter 3.4.1.1.1 --- Ergosterol content --- p.127 / Chapter 3.4.1.1.2 --- Protein content --- p.127 / Chapter 3.4.1.1.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.127 / Chapter 3.4.1.1.4 --- DDE removal and removal capacity --- p.128 / Chapter 3.4.1.2 --- Effects of inoculum sizes on the removal of DDE --- p.132 / Chapter 3.4.1.2.1 --- Ergosterol content --- p.132 / Chapter 3.4.1.2.2 --- Protein content --- p.132 / Chapter 3.4.1.2.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.132 / Chapter 3.4.1.2.4 --- DDE removal and removal capacity --- p.133 / Chapter 3.4.1.3 --- Effects of incubation time on the removal of DDE --- p.136 / Chapter 3.4.1.3.1 --- Ergosterol content --- p.136 / Chapter 3.4.1.3.2 --- Protein content --- p.136 / Chapter 3.4.1.3.3 --- Specific ligninolytic enzyme activities and ligninolytic enzyme productivities --- p.136 / Chapter 3.4.1.3.4 --- DDE removal and removal capacity --- p.137 / Chapter 3.4.1.3.5 --- Putative degradation derivatives --- p.137 / Chapter 3.5 --- Treatment of DDE by crude enzyme preparations of P. pulmonarius grown on straw-based compost --- p.142 / Chapter 3.5.1 --- The crude enzyme preparations of P. pulmonarius grown on straw-based compost --- p.142 / Chapter 3.5.2 --- Optimization of DDE removal in broth system --- p.143 / Chapter 3.5.2.1 --- Effects of initial DDE concentration on the removal of DDE --- p.143 / Chapter 3.5.2.2 --- Effects of amounts of crude enzyme preparations on the removal of DDE --- p.145 / Chapter 3.5.2.3 --- Effects of incubation time on the removal of DDE --- p.147 / Chapter 3.5.2.4 --- Putative degradation derivatives --- p.147 / Chapter 3.5.3 --- Optimization of DDE removal in soil system --- p.151 / Chapter 3.5.3.1 --- Effects of initial DDE concentration on the removal of DDE --- p.151 / Chapter 3.5.3.2 --- Effects of amounts of crude enzyme preparations on the removal of DDE --- p.151 / Chapter 3.5.3.3 --- Effects of incubation time on the removal of DDE --- p.154 / Chapter 3.5.3.4 --- Putative degradation derivatives --- p.154 / Chapter Chapter IV --- Discussions --- p.158 / Chapter 4.1 --- Quantification of the expression of the ligninolytic enzyme-coding genes --- p.158 / Chapter 4.2 --- Artificial cultivation and the expression of the ligninolytic enzyme-coding genes during solid-state-fermentation of edible mushroom Pleurotus pulmonarius --- p.164 / Chapter 4.3 --- Treatment of DDE by living P. pulmonarius --- p.166 / Chapter 4.3.1 --- Optimization of DDE removal in broth system --- p.166 / Chapter 4.3.2 --- Optimization of DDE removal in soil system --- p.169 / Chapter 4.3.3 --- Phylogeny of the ligninolytic enzyme-coding genes --- p.170 / Chapter 4.3.3.1 --- Laccase coding genes --- p.170 / Chapter 4.3.3.2 --- MnP coding genes --- p.175 / Chapter 4.3.4 --- Transcription of the ligninolytic enzyme-coding genes --- p.178 / Chapter 4.4 --- Treatment of DDE by 1st SMC of P. pulmonarius grown on straw-based compost --- p.183 / Chapter 4.4.1 --- Optimization of DDE removal in soil system --- p.183 / Chapter 4.5 --- Treatment of DDE by crude enzyme preparations of P. pulmonarius grown on straw-based compost --- p.184 / Chapter 4.6 --- Cost-effectiveness of the bioremediation method --- p.185 / Chapter 4.7 --- Further investigations --- p.194 / Chapter Chapter V --- Conclusions --- p.197 / References --- p.199

Identiferoai:union.ndltd.org:cuhk.edu.hk/oai:cuhk-dr:cuhk_325683
Date January 2006
ContributorsChan, Kam Che., Chinese University of Hong Kong Graduate School. Division of Biology.
Source SetsThe Chinese University of Hong Kong
LanguageEnglish, Chinese
Detected LanguageEnglish
TypeText, bibliography
Formatprint, xxiv, 219 leaves : ill. (some col.) ; 30 cm.
RightsUse of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0/)

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