Tissue Factor Pathway Inhibitor (TFPI) is an anticoagulant protein containing three Kunitz domains, K1, K2 and K3. K1 inhibits Factor VIIa, K2 inhibits Factor Xa, and K3 enhances the Factor Xa inhibition by its interaction with Protein S. Since zebrafish is an excellent genetic model, we hypothesized that TFPI regulation could be studied using this model. As a first step, we confirmed the presence of tfpia in zebrafish. Subsequently, we performed knockdown of tfpia, and knockout of tfpia in K3 domain using CRISPR/Cas9. Both the tfpia knockdown and tfpia homozygous deletion mutants showed increased coagulation activities. Our data suggest that zebrafish tfpia is an orthologue for human TFPIα, and silencing it results in a thrombotic phenotype. We then optimized the piggyback knockdown method, where we could simultaneously piggyback 3 or 6 ASOs corresponding to 3 or 6 genes, respectively, using one VMO. These multiple gene knockdowns will increase the efficiency of genome-wide knockdowns. Since there are no studies on chromatin remodeling that control TFPI expression, we hypothesized that the genome-wide knockdowns of the Chromatin Binding and Regulatory Proteins (CBRPs) in zebrafish could help identify novel tfpia gene regulators. We chose 69 CBRPs and subjected them to simultaneous gene knockdowns. Our results have identified 5 novel regulators for tfpia. We exploited this information to discover UNC6852, a drug that enhances tfpia mRNA levels. This could be used as an antithrombotic drug. The approach developed here could be used to study the regulation of other coagulant and anticoagulant factors.
| Identifer | oai:union.ndltd.org:unt.edu/info:ark/67531/metadc1833469 |
| Date | 08 1900 |
| Creators | Raman, Revathi |
| Contributors | Jagadeeswaran, Pudur, Mast, Alan E., Burggren, Warren W., Benjamin, Robert C., Schwark, Harris |
| Publisher | University of North Texas |
| Source Sets | University of North Texas |
| Language | English |
| Detected Language | English |
| Type | Thesis or Dissertation |
| Format | vii, 91 pages, Text |
| Rights | Public, Raman, Revathi, Copyright, Copyright is held by the author, unless otherwise noted. All rights Reserved. |
Page generated in 0.0144 seconds