Simultaneous measurement of the expression levels of thousands to ten thousand genes in multiple tissue types is a result of advancement in microarray technology. These expression levels provide clues about the gene functions and that have enabled better diagnosis and treatment of serious disease like cancer. To solve the mystery of unknown gene functions, biological to statistical mapping is needed in terms of classifying the genes. Here we introduce a novel approach of combining both statistical consistency and biological relevance of the clusters produced by a clustering method. Here we employ two performance measures in combination for measuring statistical stability and functional similarity of the cluster members using a set of gene expressions with known biological functions. Through this analysis we construct a platform to predict about unknown gene functions using the outperforming clustering algorithm.

A computational technique is introduced to reveal the complex intrinsic structure of homoclinic and heteroclinic bifurcations in a chaotic dynamical system. This technique is applied to several Lorenz-like systems with a saddle at the center, including the Lorenz system, the Shimizu-Morioka model, the homoclinic garden model, and the laser model. A multi-fractal, self-similar organization of heteroclinic and homoclinic bifurcations of saddle singularities is explored on a bi-parametric plane of those dynamical systems. Also a great detail is explored in the Shimizu-Morioka model as an example. The technique is also applied to a re exion symmetric dynamical system with a saddle-focus at the center (Chua's circuits). The layout of the homoclinic bifurcations near the primary one in such a system is studied theoretically, and a scalability ratio is proved. Another part of the dissertation explores the intrinsic mechanisms of escape in a reciprocally inhibitory FitzHugh-Nagumo type threecell network, using the phase-lag technique. The escape network can produce phase-locked states such as pace-makers, traveling-waves, and peristaltic patterns with recurrently phaselag varying.

This paper presents the theory of Noetherian filtrations, an important concept in commutative algebra. The paper describes many aspects of the theory of these objects, presenting basic results, examples and applications. In the study of Noetherian filtrations, a few other important concepts are introduced such as Rees algebras, essential powers filtrations, and filtrations on modules. Basic results on these are presented as well. This thesis discusses at length how Noetherian filtrations relate to important constructions in commutative algebra, such as graded rings and modules, dimension theory and associated primes. In addition, the paper presents an original proof of the finiteness of the intersection algebra of principal ideals in a UFD. It concludes by discussing possible applications of this result to other areas of commutative algebra.

Substance abuse is the overindulgence in and dependence on a drug or chemical leading to detrimental effects on the individual’s health and the welfare of those surrounding him or her. Logistic regression analysis is an important tool used in the analysis of the relationship between various explanatory variables and nominal response variables. The objective of this study is to use this statistical method to determine the factors which are considered to be significant contributors to the use or abuse of substances in school-aged children and also determine what measures can be implemented to minimize their effect. The logistic regression model was used to build models for the three main types of substances used in this study; Tobacco, Alcohol and Drugs and this facilitated the identification of the significant factors which seem to influence their use in children.

If A is an nxn complex matrix and λ is an eigenvalue of A with geometric multiplicity k, then λ is in at least k of the Geršgorin discs Di of A. Let k, r, t be positive integers with k ≤ r ≤ t. Then there is a txt complex matrix A and an eigenvalue λ of A such that λ has geometric multiplicity k and algebraic multiplicity t, and λ is in precisely r Geršgorin Discs of A. Some examples and related results are also provided.

Clustering, classification, and factor analysis are three popular data mining techniques. In this dissertation, we investigate these methods in high dimensional data analysis. Since there are much more features than the sample sizes and most of the features are non-informative in high dimensional data, dimension reduction is necessary before clustering or classification can be made. In the first part of this dissertation, we reinvestigate an existing clustering procedure, optimal discriminant clustering (ODC; Zhang and Dai, 2009), and propose to use cross-validation to select the tuning parameter. Then we develop a variation of ODC, sparse optimal discriminant clustering (SODC) for high dimensional data, by adding a group-lasso type of penalty to ODC. We also demonstrate that both ODC and SDOC can be used as a dimension reduction tool for data visualization in cluster analysis. In the second part, three existing sparse principal component analysis (SPCA) methods, Lasso-PCA (L-PCA), Alternative Lasso PCA (AL-PCA), and sparse principal component analysis by choice of norm (SPCABP) are applied to a real data set the International HapMap Project for AIM selection to genome-wide SNP data, the classification accuracy is compared for them and it is demonstrated that SPCABP outperforms the other two SPCA methods. Third, we propose a novel method called sparse factor analysis by projection (SFABP) based on SPCABP, and propose to use cross-validation method for the selection of the tuning parameter and the number of factors. Our simulation studies show that SFABP has better performance than the unpenalyzed factor analysis when they are applied to classification problems.

Contrast agents are of great importance in clinical applications of Magnetic Resonance Imaging (MRI) to improve the contrast of internal body structures and to obtain tissue-specific image. However, current approved contrast agents still have limitations including low relaxivity, low specificity and uncontrolled blood circulation time, which motivated researchers to develop novel contrast agents with higher relaxivity, improved targeting abilities and optimal retention time. This thesis uses animal experimental data from Dr. Jenny J. Yang’s lab at the Department of Chemistry in Georgia State University to study effects of a class of newly designed protein-based MRI contrast agents (ProCAs). Models for the longitudinal data on MRI intensity are constructed to evaluate the efficiency of different MRI contrast agents. Statistically significant results suggest that ProCA1B14 has the great potential to be a tumor specific contrast agent and ProCA32 could be a promising MRI contrast agent for the liver imaging in clinical applications.

Age related macular degeneration (AMD) is a public health concern in an aging society. The retinal pigment epithelium (RPE) layer of the eye is a principal site of pathogenesis for AMD. Morphological characteristics of the cells in the RPE layer can be used to discriminate age and disease status of individuals. In this thesis three genotypes of mice of various ages are used to study the predictive abilities of these characteristics. The disease state is represented by two mutant genotypes and the healthy state by the wild-type. Classification analysis is applied to the RPE morphology from the different spatial regions of the RPE layer. Variable reduction is accomplished by principal component analysis (PCA) and classification analysis by the k-nearest neighbor (k-NN) algorithm. In this way the differential ability of the spatial regions to predict age and disease status by cellular variables is explored.

Skewness and kurtosis are measures used to describe shape characteristics of distributions. In this thesis, we examine the interval estimates about the skewness and kurtosis by using jackknife empirical likelihood (JEL), adjusted JEL, extended JEL, traditional bootstrap, percentile bootstrap, and BCa bootstrap methods. The limiting distribution of the JEL ratio is the standard chi-squared distribution. The simulation study of this thesis makes a comparison of different methods in terms of the coverage probabilities and interval lengths under the standard normal distribution and exponential distribution. The proposed adjusted JEL and extended JEL perform better than the other methods. Finally we illustrate the proposed JEL methods and different bootstrap methods with three real data sets.

In the dissertation, we study the statistical evaluation of treatment comparisons by evaluating the relative comparison of survival experiences between two treatment groups. We construct confidence interval and simultaneous confidence bands for the ratio and odds ratio of two survival functions through both parametric and nonparametric approaches.We first construct empirical likelihood confidence interval and simultaneous confidence bands for the odds ratio of two survival functions to address small sample efficacy and sufficiency. The empirical log-likelihood ratio is developed, and the corresponding asymptotic distribution is derived. Simulation studies show that the proposed empirical likelihood band has outperformed the normal approximation band in small sample size cases in the sense that it yields closer coverage probabilities to chosen nominal levels.Furthermore, in order to incorporate prognostic factors for the adjustment of survival functions in the comparison, we construct simultaneous confidence bands for the ratio and odds ratio of survival functions based on both the Cox model and the additive risk model. We develop simultaneous confidence bands by approximating the limiting distribution of cumulative hazard functions by zero-mean Gaussian processes whose distributions can be generated through Monte Carlo simulations. Simulation studies are conducted to evaluate the performance for proposed models. Real applications on published clinical trial data sets are also studied for further illustration purposes.In the end, the population attributable fraction function is studied to measure the impact of risk factors on disease incidence in the population. We develop semiparametric estimation of attributable fraction functions for cohort studies with potentially censored event time under the additive risk model.