The main objective of this study is to develop and validate a framework for microstructural modeling of asphalt composite materials using a coupled thermo-viscoelastic, thermo-viscoplastic, and thermo-viscodamage constitutive model. In addition, the dissertation presents methods that can be used to capture and represent the two-dimensional (2D) and three-dimensional (3D) microstructure of asphalt concrete. The 2D representative volume elements (RVEs) of asphalt concrete were generated based on planar X-ray Computed Tomography (CT) images. The 2D RVE consists of three phases: aggregate, matrix, and interfacial transmission zone (ITZ). The 3D microstructures of stone matrix asphalt (SMA) and dense-graded asphalt (DGA) concrete were reconstructed from slices of 2D X-ray CT images; each image consists of the matrix and aggregate phases. The matrix and ITZ were considered thermo-viscoelastic, thermo-viscoplastic, and thermo-viscodamaged materials, while the aggregate is considered to be a linear, isotropic elastic material. The 2D RVEs were used to study the effects of variation in aggregate shape, distribution, volume fraction, ITZ strength, strain rate, and temperature on the degradation and micro-damage patterns in asphalt concrete. Moreover, the effects of loading rate, temperature, and loading type on the thermo-mechanical response of the 2D and 3D microstructures of asphalt concrete were investigated. Finally, the model parameters for Fine Aggregate Mixture (FAM) and full asphalt mixture were determined based on the analysis of repeated creep recovery tests and constant strain rate tests. These material parameters in the model were used to simulate the response of FAM and full asphalt mixture, and the results were compared with the responses of the corresponding experimental tests. The microstructural modeling presented in this dissertation provides the ability to link the microstructure properties with the macroscopic response. This modeling combines nonlinear constitutive model, finite element analysis, and the unique capabilities of X-ray CT in capturing the material microstructure. The modeling results can be used to provide guidelines for designing microstructures of asphalt concrete that can achieve the desired macroscopic behavior. Additionally, it can be helpful to perform 'virtual testing' of asphalt concrete, saving numerous resources used in conducting real experimental tests.

Viscoelastic surfactants (VES) have been widely used in acidizing and acid fracturing. They are used as diversion agents during matrix acid treatments and leakoff control agents during acid fracturing. At high temperatures, viscoelastic surfactants hydrolyze, resulting in phase separation after a certain time. Their viscosities significantly decrease and it is much easier for them to flow back causing much less damage to the formation. In this study, 4 to 8 wt% of a new VES-acid system was tested at temperatures of up to 250°F over hydrolysis times of 0 to 6 hours. Then, the solutions were neutralized by calcium carbonate until the pH reached 4.5. An HP/HT rheometer was used to measure the viscosity of the spent acids. Mass spectrometry (MS) was conducted to analyze the hydrolysis products of the VES. Coreflood tests were also conducted on Indiana limestone to determine the effects of the hydrolysis products on the permeability of these cores. The temperature was set at 250°F and the flow rate at 2.5 cm^(3)/s. The viscosities of all VES-acid systems remained high at the beginning of hydrolysis, which was good for acid diversion. After that, the VES acid systems experienced a significant viscosity reduction due to phase separation; it became much easier for the spent acid to flow back. Coreflood experiments caused little damage to the Indiana limestone. MS results indicated hydrolysis of peptide bonds. Fatty acids formed the top oil layer, and amine-based molecules formed the aqueous phase. This study will summarize and discuss the details of viscosity changes of the acid systems of this kind of viscoelastic surfactant, the damage caused by hydrolysis products, and how this kind of viscoelastic surfactant can be used to improve treatments.

The aim of this study was to further investigate the role of pro-inflammatory cytokines in the pathogenesis of fetal cererbral white matter injury associated with chorioamnionitis by charaterizing the time course of the cytokine response in the pregnant guinea pig following a maternal inflammatory insult. Chorioamnionitis increases the risk for fetal brain injury. In the guinea pig, a threshold maternal inflammatory response must be reached for significant fetal brain injury to occur. However, a previous study demonstrated that, by seven days after an acute maternal inflammatory insult, cytokine levels in both maternal and fetal compartments are not different from controls. The purpose of this study, therefore, was to test the hypothesis that a significant cytokine response occurs within the first seven days following an acute maternal inflammatory response. Pregnant guinea pigs (n=34) were injected intraperitoneally with 100µg/kg lipopolysaccharide (LPS) at 70% gestation and euthanized at 24 hours, 48 hours or 5 days following endotoxin exposure. Control animals were euthanized at 70% gestation without exposure. Concentrations of interleukin-6, interleukin 1-β and tumour necrosis factor-α (IL-6, IL-1β, TNF-α) were quantified in the maternal serum and amniotic fluid by enzyme-linked immunosorbent assay. IL-6 and IL-1β concentrations were elevated in the maternal serum at 24 hours and returned to control levels by five days. In the amniotic fluid, IL-6 peaked at 48 hours and IL-1β at 24 hours. TNF-α levels were not significantly increased. A single maternal LPS injection produces transient increases in cytokine concentrations in the maternal serum and amniotic fluid. This further implicates the cytokines as potential mediators of fetal white matter damage. Although this response might not be sufficient to produce the brain injury itself, it may initiate harmful pro-inflammatory cytokine cascades, which could even continue to harm the fetus following delivery. A human diagnostic protocol was developed to assess the use of serial serum biomarkers, including IL-6 and TNF-α, in the prediction of histological chorioamnionitis. Preliminary analysis of the pilot study suggests that certain biomarkers might be worthy of further investigation in a larger-scale study. / Thesis (Master, Anatomy & Cell Biology) -- Queen's University, 2007-11-28 08:23:04.327

Oxidative stress and histone deacetylase (HDAC) inhibition has been implicated as potential mechanisms in valproic acid (VPA) teratogenicity. Reactive oxygen species (ROS) can target DNA to cause oxidative DNA damage and DNA double strand breaks (DSBs) which can be repaired through homologous recombination (HR). HR is not an error free process and can result in detrimental genetic changes. In this present study we evaluated the role of HDAC inhibition in VPA-initiated HR. HDAC inhibition may indirectly alter repair activity as a result of increased expression of genes involved in HR or indirectly by causing DNA damage which initiates repair. The first objective was to investigate the ability of VPA to cause HDAC inhibition in the Chinese hamster ovary (CHO) 33 cell line. Using immunblotting, an increase in acetylated histone H3 and H4 protein levels was observed throughout 24 hr exposure to 5 mM VPA. Secondly, to investigate whether VPA affects the activity of DNA DSB repair, CHO 33 cells were transfected with either the endonuclease I-SceI plasmid to induce a site specific DSB or the empty plasmid, pGem. However, no increase in the difference in HR between VPA and media exposed I-Sce1 transfected cells compared to cells transfected with pGem was observed, which suggests that VPA does not affect DNA repair activity. Thirdly, to determine if VPA-induced HDAC inhibition increases susceptibility to DNA damage, immunocytochemistry revealed an increase in the number of γ-H2AX foci throughout 24 hr exposure to 5 mM VPA. To determine if oxidative stress may play a role in mediating VPA-induced DNA DSBs, another recombination study was carried out in which cells were pretreated with 400 U/ml of PEG-catalase prior to VPA treatment. The observed protective effect of PEG-catalase against VPA-induced HR and the generation of intracellular ROS by VPA suggest ROS may also play a role in VPA-initiated HR. However, in our DNA oxidation study, no increase in the oxidized nucleosides, 8-hydroxy-2'-deoxyguanosine and 5-hydroxycytosine was observed after VPA treatment. These studies suggest that HDAC inhibition and ROS signalling may play other roles in DNA maintenance and cell cycle arrest in initiating DNA DSBs and HR repair. / Thesis (Master, Pharmacology & Toxicology) -- Queen's University, 2009-08-12 14:27:16.327

Benzene is a ubiquitous environmental pollutant and a known human leukemogen. Early-life exposure to environmental carcinogens, including benzene, may lead to genomic instability in the fetus, ultimately leading to an increased risk for the development of childhood cancers including leukemia. It is possible that exposure to benzene results in DNA damage that may either be left unrepaired or be repaired erroneously causing genotoxicity. The first objective of this study was to determine if exposure of fetal hematopoietic cells to p-benzoquinone, a known toxic metabolite of benzene, increased DNA recombination in the pKZ1 model of mutagenesis. A significant increase in recombination was observed following exposure to 25 μM and 50 μM p-benzoquinone for 2, 4, 8, and 24 hours. A significant increase in recombination was also observed following exposure to 25 μM p-benzoquinone for 30 min, 45 min, and 1 hour, but not 15 min as compared to vehicle alone. Secondly, this study determined if exposure of fetal hematopoietic cells to p-benzoquinone resulted in DNA damage using γ-H2A.X as a marker for DNA double strand breaks and 8-hydroxy-2’-deoxyguanosine as a marker of oxidative DNA damage. A significant increase in γ-H2A.X foci formation was observed following exposure to 25 μM p-benzoquinone for 30 min, 45 min and one hour. Exposure of fetal hematopoietic cells to 25 μM p-benzoquinone did not significantly increase oxidative DNA damage at any of the examined time points. The third objective of this study was to determine whether or not reactive oxygen species were involved in the observed increase in DNA damage and recombination. Exposure to 25 μM p-benzoquinone for 15 min and 30 min, but not 45 min or one hour, led to an increase in reactive oxygen species production as measured by 5-(and-6)-chloromethyl-2-7-dichlorodihydrofluorescein diacetate fluorescence. Additionally, pretreatment with 400 U/mL PEG-catalase, an antioxidative enzyme, attenuated the increases in both DNA recombination and DNA double strand breaks as compared to treatment with p-benzoquinone alone. These studies indicate that p-benzoquinone is able to induce DNA damage and recombination in fetal hematopoieitic cells and that reactive oxygen species and oxidative stress may be important in the mechanism of toxicity. / Thesis (Master, Pharmacology & Toxicology) -- Queen's University, 2010-07-23 15:44:05.381

Dephosphorylation of the Cdc2 kinase by the Cdc25 tyrosine phosphatase is the universally conserved trigger for mitotic entry. Cdc25 is also the point of convergence for checkpoint signaling pathways which monitor the genome for damaged DNA and incomplete replication. In addition, Cdc25 is inhibited by a MAP kinase cascade in the event of osmotic, oxidative and/or heat stress. These pathways inhibit cell cycle progression by phosphorylating Cdc25 resulting in its association with 14-3-3 and nuclear export. Although Cdc25 can be observed leaving the nucleus following inhibitory signals it is controversial whether phosphorylation, 14-3-3 binding or export itself is required for checkpoint proficiency. In fission yeast, Cdc25 is phosphorylated in vitro on 12 serine and threonine residues by the effector kinase of the DNA replication checkpoint, Cds1. Nine of these residues reside in the N-terminal regulatory region, while three are found in the extreme C-terminus of the protein. We show here that phosphorylation the nine N-terminal residues, nor any of the 12 in vitro sites, are required for enforcement of the DNA replication checkpoint. In lieu of Cdc25 phosphorylation the phosphatase is rapidly degraded and mitotic entry prevented by the action of the Mik1 kinase, targeting Cdc2. Thus, multiple mechanisms exist for preventing mitotic entry when S-phase progression is inhibited. The three C-terminal in vitro phosphorylation sites have not previously been examined in fission yeast. However, homology exists between the S. pombe protein and the Cdc25 orthologues in humans, Xenopus and Drosophila in this region. We report here that in S. pombe these sites are required to prevent mitotic entry following replication arrest in the absence of Mik1, and in the maintenance, but not establishment, of arrest following DNA damage. Our previous work showed that Cdc25 nuclear import requires the Sal3 importin-β but at the time we were unable to show a direct interaction between these two proteins. The final chapter of this thesis proves physical interaction by co-immunoprecipitation. Cdc25 mutants lacking all twelve putative Cds1 sites show nuclear localization during mitosis in a sal3- background, effectively reversing the cell cycle regulated pattern of accumulation of the phosphatase. / Thesis (Ph.D, Biology) -- Queen's University, 2011-06-20 12:16:15.71

Understanding the behavior of geomaterials under explosive loading is essential for several applications in the mining and oil industry. To date, the design of these applications is based almost solely on empirical equations and tabulated data. Optimal designs require accurate and complete knowledge of rock behavior under various loading conditions. The vast majority of the properties available in the literature have been gathered by deforming the specimen slowly. These properties have been used to establish constitutive models which describe the behavior of rocks under static and quasi-static loading conditions. However, the dynamic properties and material constitutive models describing the behavior of geomaterials under high strain-rate loading conditions are essential for a better understanding and enhanced designs of dynamic applications. Some attempts have been made to measure dynamic properties of rocks. Also, some trials have been made to devise material models which describe the behavior of rocks and the evolution of damage in the rock under dynamic loading. Published models were successful in predicting tensile damage and spalling in rocks. However, there are no established models capable of predicting compressional damage in rocks due to dynamic loading. A recently-developed model, the RHT model, was formulated to describe the behavior of concrete over the static and dynamic ranges. The model was also formulated to predict compressional damage based on the strain rate at which the material is subjected to. The RHT model has been used successfully in several applications. The purpose of this research was to characterize one rock type as an example of a hard brittle rock. The physical properties of the rock as well as the static and dynamic mechanical properties were investigated. These properties were used to calibrate the RHT model and investigate its potentials to predict compressional damage in brittle materials. The calibrated model showed good precision reproducing the amplitude of the strain signals generated by explosive loading. It was also capable of predicting compressional damage with acceptable accuracy. Unfortunately, due to implementation restrictions, tensile and spall damage could not be captured by the model. The duration and shape of the strain pulse were also poorly modeled. / Thesis (Ph.D, Mining Engineering) -- Queen's University, 2010-12-22 17:54:05.887

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