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Analyse statistique de la sélection dans des banques minimalistes de protéines / Statistical analysis of selection in minimalist libraries of proteinsBoyer, Sébastien 01 October 2015 (has links)
L'évolution par sélection naturelle se compose d'une succession de trois étapes : mutations, sélection et prolifération. Nous nous intéressons à la description et à la caractérisation du résultat d'une étape de sélection dans une population composée de nombreux variants. Après sélection, cette population va être dominée par les quelques meilleurs variants, ceux qui ont la plus grande capacité à être sélectionnés, ou plus grande « sélectivité ». Nous posons la question suivante : comment est distribuée la sélectivité des meilleurs variants dans la population? La théorie des valeurs extrêmes, qui caractérise les queues extrêmes des distributions de probabilités en terme de 3 classes d'universalités, a été proposée pour répondre à cette question. Pour tester cette proposition et identifier les classes d'universalités rencontrées dans ce genre de problème, nous avons procédé à une sélection quantitative de banques composées de $10^5$ variants d'anticorps grâce à la technique du phage display. Les données obtenues par séquençage à haut débit du résultat de la sélection de nos banques nous permettent d'ajuster la distribution de sélectivités obtenue sur plus de deux décades. / Evolution by natural selection involves the succession of three steps: mutations, selection and proliferation. We are interested in describing and characterizing the result of selection over a population of many variants. After selection, this population will be dominated by the few best variants, with highest propensity to be selected, or highest “selectivity”. We ask the following question: how is the selectivity of the best variants distributed in the population? Extreme value theory, which characterizes the extreme tail of probability distributions in terms of a few universality class, has been proposed to describe it. To test this proposition and identify the relevant universality class, we performed quantitative in vitro experimental selections of libraries of > $10^5$ antibodies using the technique of phage display. Data obtained by high-throughput sequencing allows us to fit the selectivity distribution over more than two decades. In most experiments, the results show a striking power law for the selectivity distribution of the top antibodies, consistent with extreme value theory.
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Comparison of the new "econophysics" approach to dealing with problems of financial to traditional econometric methodsKoh, Jason S. H., University of Western Sydney, College of Business, School of Economics and Finance January 2008 (has links)
We begin with the outlining the motivation of this research as there are still so many unanswered research questions on our complex financial and economic systems. The philosophical background and the advances of econometrics and econophysics are discussed to provide an overview of the stochastic and nonstochastic modelling and these disciplines are set as a central theme for the thesis. This thesis investigates the effectiveness of financial econometrics models such as Gaussian, ARCH (1), GARCH (1, 1) and its extensions as compared to econophysics models such as Power Law model, Boltzmann-Gibbs (BG) and Tsallis Entropy as statistical models of volatility in US S&P500, Dow Jones and NASDAQ stock index using daily data. The data demonstrate several distinct behavioural characteristics, particularly the increased volatility during 1998 to 2004. Power Laws appear to describe the large fluctuations and other characteristics of stock price changes. Surprisingly, these Power Laws models also show significant correlations for different types and sizes of markets and for different periods and sub-periods of markets. The results show the robustness of Power Law analysis, with the Power Law exponent (0.4 to 2.4) staying within the acceptable range of significance (83% to 97%), regardless of the percentage change in the index return. However, the procedure for testing empirical data against a hypothesised power-law distribution using a simple rank-frequency plot of the data and the data binning process can turn out to be a spurious result for the distribution. As for the stochastic processes such as ARCH (1) and GARCH (1, 1) the models are explicitly confined to the conditional behaviour of the data and the unconditional behaviour has often been described via moments. In reality, it is the unconditional tail behaviour that accounts for the tail behaviour and hence, we have to convert the unconditional tail behaviour and express the models as two-dimensional stochastic difference equation using the processes of Starica (Mikosch 2000). The results show the random walk prediction successfully describes the stock movements for small price fluctuations but fails to handle large price fluctuations. The Power Law tests prove superior to the stochastic tests when stock price fluctuations are substantially divergent from the mean. One of the main points of the thesis is that these empirical phenomena are not present in the stochastic process but emerge in the non-parametric process. The main objective of the thesis is to study the relatively new field of Econophysics and put its work in perspective relative to the established if not altogether successful practice of econometric analysis of stock market volatility. One of the most exciting characteristics of Econophysics is that, as a developing field, no models as yet perfectly represent the market and there is still a lot of fundamental research to be done. Therefore, we begin to explore the application of statistical physics method particularly Tsallis entropy to give a new insights into problems traditionally associated with financial markets. The results of Tsallis entropy surpass all expectations and it is therefore one of the most robust methods of analysis. However, it is now subject to some challenge from McCauley, Bassler et. al., as they found that the stochastic dynamic process (sliding interval techniques) used in fat tail distributions is time dependent. / Doctor of Philosophy (PhD)
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A study of time-resolved high-temperature structural order-disorder transformations in rare earth-transition metal intermetallics with 2-17 stoichiometryKostogorova-Beller, Yulia Y. January 1900 (has links)
Thesis (Ph.D.)--University of Nebraska-Lincoln, 2007. / Title from title screen (site viewed Dec. 4, 2007). PDF text: xviii, 149 p. : ill. ; 7 Mb. UMI publication number: AAT 3271931. Includes bibliographical references. Also available in microfilm and microfiche formats.
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Dynamical phenomena in multicomponent polymersNarayanan, Bharadwaj, January 1900 (has links) (PDF)
Thesis (Ph. D.)--University of Texas at Austin, 2006. / Vita. Includes bibliographical references.
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The influence of small scale variability on scaling relationships describing atmospheric turbulenceHowell, James Frederick 19 May 1993 (has links)
The statistics describing variations of turbulent motions within the so called
inertial range of length scales depend on the scale over which the motions are varying
and the "average" rate at which the turbulent kinetic energy is being dissipated on the
molecular scale. This hypothesis stemmed from the similarity arguments published
by A. N. Kolmogorov in 1941 and implies specific scaling relations between the
average amplitude and length scale of turbulent motions. Turbulent motions agree to
a good approximation with Kolmogorov scaling provided the fluid flow admits to the
underlying assumptions.
More recently it has been recognized that the large spatial variations in the rate
of turbulent kinetic energy dissipation may be a partial explanation for deviations
from Kolmogorov scaling. This recognition is due in part to the observation that the
total volume occupied by turbulent motions of a given scale decreases as the scale
decreases. These observations imply that active small scale turbulence is intermittent.
This study aims to better understand how scaling relations describing more active
regions are different from the relations describing turbulence where the small scales
are less active. The thesis is that the relations are different.
An 18 hour segment of wind data measured in near-neutral stratification 45
meters above a relatively flat ground is analyzed. There is virtually no trend in the
mean wind speed, so the describing statistics are essentially stationary. Small scale
activity is measured in terms of the difference in wind speed (structure function) at
a separation distance of 1/16 of a second, which translates to about a meter. The
differences in wind speed are raised to the sixth power and then averaged over 4
second (50 meter) windows.
Non-overlapping windows containing a local maximum in the averaged sixth
order structure function form one (MASC) ensemble of more active small scale
samples and the local minima form another (LASC) ensemble of less active small
scale samples. The variations in wind speed as a function of length scale within each
ensemble are decomposed five different ways. Each of the five decompositions obey
scaling relationships that are approximately linear in log-log coordinates. The MASC
and LASC ensembles include 32% and 46% of the record, respectively.
The turbulent kinetic energy as a function of scale falls off at a slower rate in the
MASC ensemble versus the LASC ensemble and in magnitude the energy is greater
at all scales in the MASC ensemble. This implies the transfer rate of turbulent kinetic
energy toward small scales is more rapid on average in the MASC samples. Samples
in the MASC ensemble occupied 30% less of the record, implying the flattening effect
on the spectral slope exhibited by the samples contained in the MASC ensemble is less
influential than the steepening influence of samples of the type in the LASC ensemble.
The results are robust with respect to the choice of a basis set in representing the
variance as a function of scale. / Graduation date: 1994
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Case studies in omniparametric simulation /Lundin, Fredrik, January 2006 (has links)
Thesis (Ph. D.)--Chalmers tekniska högskola and Göteborgs universitet, 2006. / Includes bibliographical references (p. 219-224) and index.
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Designing hydrogel microspheres from liquid-liquid phase transitions of aqueous polymer solutions /Yin, Xiangchun. Stöver, Harald D. H. January 1900 (has links)
Thesis (Ph.D.)--McMaster University, 2004. / Supervisor: Harald D. H. Stöver.
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Nonlinear free boundary problems arising from soil freezing in a bounded region /Mohamed, Fouad Abd El-Aal. January 1983 (has links)
Thesis (Ph. D.)--Oregon State University, 1983. / Typescript (photocopy). Includes bibliographical references (leaves 130-132). Also available on the World Wide Web.
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Case studies in omniparametric simulation /Lundin, Fredrik. January 2006 (has links)
Chalmers Univ. of Technology and Göteborg Univ., Diss.--Göteborg, 2006.
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Analytical studies on the force-induced phase transitions in slender shape memory alloy cylinders layers /Wang, Jiong. January 2009 (has links) (PDF)
Thesis (Ph.D.)--City University of Hong Kong, 2009. / "Submitted to Department of Mathematics in partial fulfillment of the requirements for the degree of Doctor of Philosophy." Includes bibliographical references (leaves [214]-224)
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