No / This work investigated the effect of electroporation on human epidermal penetration of a model neutral lipophilic compound (estradiol) from saturated aqueous solution and when encapsulated in ultradeformable liposomes. Total amount penetrated and skin deposition were compared with values obtained from passive diffusion. The effect of electrical pulsing on liposome size was investigated. The action of phosphatidylcholine on skin that was structurally altered by such pulses was determined. Electroporation did not affect liposome size. Skin pulsing considerably increased estradiol penetration and skin deposition from solution, relative to passive delivery, with subsequent partial recovery of skin resistance to molecular penetration. Surprisingly, with liposomes, electroporation did not markedly affect estradiol skin penetration. Importantly, liposomal phosphatidylcholine applied during or after pulsing accelerated skin barrier repair, i.e. provided an anti-enhancer or retardant effect.

Through study of microorganisms living within the terrestrial subsurface deeper understanding of life and its limits on Earth, and beyond, can be obtained. Integral membrane phospholipids and their derivatives can act as biosignatures for microbial life and its processes. However, our understanding of the carbon source for, and rates of cycling of, lipids in low biomass environments where interactions with mineral matrices will be highly important, remains limited. Characterization of phospholipid fatty acids and their isotopic compositions, combined with DNA analysis, identified an ancient, isolated subsurface microbial community dominated by a single taxon, Candidatus Frackibacter that is hypothesized to subsist off host-rock-derived carbon enabling survival on geologic timescales. Thus, deep subsurface groundwaters may provide a refuge for life’s long-term survival on Earth, and potential astrobiological targets like Mars. Interpreting low biomass lipid signatures requires understanding of the temporal stability of lipids and organisms. The implications of association with mineral matrices to lipid stability was characterized via abiotic hydrolysis experiments at low and high pH with either basalt or bentonite. Lipid lifetimes are increased by up to one order of magnitude in the presence of bentonite under acidic and basic conditions, and basalt under highly acidic conditions. The temporal stability of lipid signatures of a low biomass community under growth suppression indicated community survival through a prolonged starvation state. By acquiring a growth advantage in stationary-phase phenotype (GASP), organisms may remain viable beyond their expected lifetimes. Overall, this research demonstrates that low-biomass communities and associated lipids can persist beyond abiotic limits and utilize geologic carbon sources to support metabolism. These results contribute to our understanding of all subsurface life and have implications to the timeframe represented by lipid biomarkers and the potential survival of life in deep subsurface environments. / Thesis / Candidate in Philosophy / The study of microorganisms in the terrestrial subsurface contributes to our understanding of life as we know it, both on Earth and as we search for life beyond Earth. Biosignature compounds, organic compounds derived from microbes such as phospholipids and nucleic acids, can elucidate microbial community structure and metabolic strategies. Interpretation of these biosignatures can become challenging in low biomass subsurface environments where low levels of biological activity and interactions with matrix minerals of the geologic system may affect lipid lifetimes and reduce rates of cycling relative to surface environments. This dissertation seeks to understand the constraints on lipid lifetimes in low biomass subsurface systems, and the implications of lipid abundance, distribution, and isotopic composition to our understanding of subsurface microbial communities. Through holistic analysis of complementary methods this thesis contributes to a deeper understanding of cryptic subsurface microbial communities and to the increased reliability of phospholipid biosignatures as indicators for extant life.

Metal ions and complexes utilized as cleavage agents have influenced many synthetic approaches of scientists to assist in the cleavage and transformation of biomolecules. These metal-based synthetic cleavage agents have potential applications in biotechnology or as molecular therapeutic agents. Herein, we have examined Ce(IV) metal ion and complexes as acidic hydrolytic agents in lipid hydrolysis reactions (Chapter 2 and 3), and a copper(II) complex that photo-oxidizes DNA upon exposure to ultraviolet light (Chapter 4). In Chapter 2 we examined the hydrolysis of sphingomyelin vesicles by Ce(NH4)2(NO3)6 (Ce(IV)) and compared the results to twelve d- and f-block metal salts, hydrolysis of mixed lipid vesicles and mixed micelles of sphingomyelin by Ce(IV), and hydrolysis of phosphatidylcholine vesicles by Ce(IV), using either MALDI-TOF mass spectrometry or colorimetric assays. In Chapter 3, we described the study of a Ce(IV) complex based on 1,3-bis[tris(hydroxymethyl)methylamino]propane as a potential acidic hydrolytic agent of phospholipids using colorimetric assays and NMR spectroscopy. The hydrolytic agent provided markedly enhance hydrolysis at lysosomal pH (~ 4.8), but suppress hydrolysis when pH was raised to near-neutral pH (~ 7.2). This was due to the pKa values of the donor atoms of the ligand, in which the metal’s electrophilicity was reduced to a greater extent at ~ pH 7.2 compared to ~ pH 4.8. Chapter 4 describes the synthesis and study of a Cu(II) complex based on a hexaazatriphenylene derivative for photo-assisted cleavage of double-helical DNA. Scavenger and chemical assays suggested the formation of DNA damaging reactive oxygen species, hydroxyl and superoxide radicals, and hydrogen peroxide, in the photocleavage reactions. Thermal denaturation and UV-vis absorption studies suggested that the Cu(II) complex binds in a non-intercalative fashion to duplex DNA.

The interaction between low-density lipoprotein (LDL) and glycosaminoglycans is a key factor in atherosclerosis. The present study examines the characteristics of LDL and its binding properties with the main glycosaminoglycan of the vascular wall, chondroitin 6- sulphate (C6S). The compositional characteristics that were studied for each LDL sample were phase transition temperature, phospholipid content, free cholesterol content, cholesteryl ester content, triglyceride content, and size. Correlations of these characteristics with LDL-C6S binding were analyzed using a turbidity assay. Our results showed that there is no correlation between LDL-C6S binding and phase transition temperature, triglyceride content, or size. Strong correlations were present for LDL-C6S binding and phospholipid content (P < 0.0001, r2 = 0.4591), free cholesterol content (P < 0.01, r2 = 0.2495), and cholesteryl ester content (P < 0.005, r2 = 0.2952). When values for surface (phospholipids and free cholesterol) and core (cholesteryl esters and triglycerides) lipids were determined a positive correlation was also present with LDL-C6S binding (P < 0.0005, r2 = 0.4172; P < 0.0005, r2 = 0.4282; respectively). These results indicate that large, lipid-rich LDL particles have a higher capacity to bind C6S than smaller, lipid poor LDL. Possible implications for the atherogenicity of LDL are discussed.

Bacterial infections are a serious problem for patients with burns and other wounds. Such burn wound infection accounts for the pathogenic bacteria by colonising onto burned areas. Therefore, the need for detection and inhibition of such bacterial colonisation requires a methodology for sensing/killing pathogenic bacteria. This research project aims to design a ‗smart‘ wound dressing system which can respond to the microbiological environment of the wound via a simple colour change and will release antimicrobials only when required. Two strains of pathogenic bacteria Staphylococcus aureus (MSSA 476) and Pseudomonas aeruginosa (PAO1) were used in the study. The non-pathogenic bacterium E.coli (DH5α) was used as a control organism as it does not secrete virulence factors and therefore does not lyse membranes of vesicles. The key contributions of this thesis are outlined below. Firstly, an initial responsive nanocapsule system was studied. The fundamental work with giant unilamellar vesicles proved such a responsive system can provide antimicrobial properties when antimicrobial agents were encapsulated within the vesicles. Secondly, partially polymerised vesicles—polydiacetylene/phospholipid vesicles were then developed to improve vesicle stability. The vesicle system was optimised by varying molar concentration of diacetylene monomers (TCDA) in order to obtain relatively stable vesicles as well as sensitivity to the toxins secreted by the pathogenic strains. Measurements proved that the polydiacetylene/phospholipid vesicles can respond to pathogenic bacteria when fluorescent dye/antimcirobials were encapsulated in the vesicles. Finally, a simple prototype dressing was constructed. Plasma polymerised maleic anhydride (pp-MA) deposited onto non-woven polypropylene was shown to be a good method to stabilise vesicles via covalent bonding. Vesicle adhered to pp-MA non-woven polypropylene showed the ability to inhibit/kill the pathogenic strains, quantified by the Japanese Industry Standard assay and also gave a fluorimetric colour response in the presence of pathogenic bacteria when a fluorescent dye is encapsulated within vesicles. Other simple prototypes were also attempted by using hydrogels (gelatine and collagen) to maintain vesicle stability as well as promote tissue healing.

N-Acylphosphatidylethanolamine (NAPE) and its hydrolysis product, N-acylethanolamine (NAE), are minor but ubiquitous lipids in multicellular eukaryotes. Various physiological processes are severely affected by altering the expression of fatty acid amide hydrolase (FAAH), an NAE-hydrolyzing enzyme. To determine the effect of altered FAAH activity on NAPE molecular species composition, NAE metabolism, and general membrane lipid metabolism, quantitative profiles of NAPEs, NAEs, galactolipids, and major and minor phospholipids for FAAH mutants of Arabidopsis were determined. The NAPE molecular species content was dramatically affected by reduced FAAH activity and elevated NAE content in faah knockouts, increasing by as much as 36-fold, far more than the NAE content, suggesting negative feedback regulation of phospholipase D-mediated NAPE hydrolysis by NAE. The N-acyl composition of NAPE remained similar to that of NAE, suggesting that the NAPE precursor pool largely determines NAE composition. Exogenous NAE 12:0 treatment elevated endogenous polyunsaturated NAE and NAPE levels in seedlings; NAE levels were increased more in faah knockouts than in wild-type or FAAH overexpressors. Treated seedlings with elevated NAE and NAPE levels showed impaired growth and reduced galactolipid synthesis by the “prokaryotic” (i.e., plastidic), but not the “eukaryotic” (i.e., extraplastidic), pathway. Overall, our data provide new insights into the regulation of NAPE–NAE metabolism and coordination of membrane lipid metabolism and seedling development.

An outline of the work contained in this thesis is presented. The first chapter is a critical review of the literature pertaining to the pathophysiological mechanisms operational with regards to the antiphospholipid syndrome (APS). The syndrome is characterised by venous and arterial thrombosis, and recurrent fetal loss, in association with the persistent presence of antibodies targeting the main autoantigen beta 2-glycoprotein I (β2GPI). The second chapter reviews the literature delineating the diverse physiological functions of β2GPI, and then relates them to its role in our current understanding of the pathophysiology of APS. The third chapter presents a critical review of the evidence base for the diagnosis and management of APS. The fourth chapter describes the interaction between β2GPI and the glycoprotein Ib alpha (GPIbα) subunit of the platelet receptor GPIb-IX-V. GPIbα is an important platelet adhesion receptor, which mediates multiple additional functions on the platelet surface, including binding coagulation factor XI (FXI). The implication of the interaction between β2GPI and GPIbα on platelet activation and the release of thromboxane in the presence of anti-β2GPI antibodies is explored, as well as the intracellular pathways via which this activation occurs. The relevance of these findings to understanding APS pathogenesis, in particular thrombosis, is discussed. The fifth chapter delineates the interaction between the fifth domain of β2GPI and FXI and its activated form factor XIa (FXIa). The ability of FXIa to cleave β2GPI between lysine (Lys) 317 and threonine (Thr) 318, and modulate its function is reported. The sixth chapter describes the ability of β2GPI to inhibit FXIa autoproteolytic hydrolysis at the specific FXIa residues arginine (Arg) 507, Arg532 and Lys539. This interaction with β2GPI stabilizes FXIa activity over time, and leads to enhanced FXIa mediated fibrin formation. This is a novel physiological function of β2GPI with important implications. Recent epidemiological studies by others have emphasized the critical role of FXIa in pathological thrombus propagation. The seventh chapter defines the relevance of the FXIa residues Arg507, Arg532 and Lys539 to FXIa mediated inactivation by the main FXIa inhibitor Protease Nexin 2 (PN2), and by Antithrombin III (ATIII). Insights into future directions for research are presented and discussed within each individual chapter.

Las células biológicas, bloques elementales de construcción de la materia viva, son presentadas en grandes cantidades en nuestro planeta, y son extremadamente importantes para nosotros, porque todos estamos hechos de ellos. Un componente esencial de cada célula es la membrana celular, protegiendo las células del medio ambiente y también controlando el transporte de los productos químicos entre el interior y el exterior de la célula. Cuando un extraño nano-objeto se aproxima a la membrana celular, las preguntas importantes sobre su destino surgirán de manera natural. ¿Será el nano-objeto capaz de atravesar la membrana, o la membrana lo parará? ¿Si la nano-objeto dañará seriamente los mecanismos de membrana, provocando el muerte de la célula, o no? Alguien puede imaginar numerosas aplicaciones prácticas de las interacciones específicas posibles entre un nano-objeto y la membrana. Pueden ser utilizadas, por ejemplo, para entregar una medicina necesaria dentro de una célula enferma, o para eliminar las células dañinas específicas por la destrucción de sus membranas o por la supresión de su correcto funcionamiento. Las preguntas mencionadas anteriormente son difíciles de responder en la actualidad, tanto por los métodos experimentales como por los métodos teóricos. La mayor dificultad es la compleja estructura de la membrana celular, que consiste de una bicapa lipídica, con numerosas proteínas integradas en él y ancladas a ella. La base de lípidos de la membrana está formada por una mezcla de fosfolípidos, glucolípidos, colesterol, y los fosfolípidos son el principal compuesto de la bicapa. Así, una bicapa de fosfolípidos puros puede ser considerada como un modelo de una membrana de la célula real, tanto en estudios experimentales como en unos teóricos. Se puede utilizar para estimar las propiedades mecánicas de la membrana biológica, su permeabilidad para diferentes productos químicos y nano-objetos, para estudiar su interacción con las proteínas individuales. El número de los métodos experimentales se aplican con éxito para / Biological cells, elementary building blocks of the live matter, are presented in large amounts on our planet, and they are extremely important for us, because all we are made of them. An essential component of every cell is the cell membrane, protecting the cell from the environment and also controlling the transport of chemicals between the interior and exterior of the cell. When an extraneous nano-object approaches the cell membrane, important questions about their destiny arise naturally. Will be the nano-object able to pass through the membrane, or will the membrane stop it? Will the nano-object severely damage the membrane machinery, causing the cell death, or not? One can image numerous practical applications of specific interactions possible between a nano-object and the membrane. They may be used, for example, to deliver a necessary medicine inside a deceased cell, or to kill some specific harmful cells by destruction of their membranes or by suppression of their proper functioning. The questions outlined above are hard to answer at the present day, both using experimental or theoretical methods. The major difficulty is the complex structure of the cell membrane, consisting of lipid bilayer, with numerous proteins embed into it and anchored to it. The lipid basement of the membrane is formed by mixture of phospholipids, glycolipids, cholesterol, and the phospholipids are the major compound of the bilayer. Thus a pure phospholipid bilayer can be considered as a model of a real cell membrane both in experimental and theoretical studies. It can be used to estimate mechanical properties of the biological membrane, its permeability for different chemicals and nano-objects, to study its interaction with single proteins.

Biological membranes are quasi two-dimensional self-assembled structure, primarily serving as a barrier to the leakage of cell’s contents. The main constituents of biological membrane are various amphiphilic lipids that form bilayers in an aqueous environment. These lipids carry acidic and/or basic functional groups that ionize in water, giving some of them a net electrical charge. Such a lipid molecule, when integrated into the membrane, experiences electrostatic forces from all other charged objects around it, including ions, surrounding lipids, and other molecules such as cationic peptides. The electrostatic interaction can profoundly influence the membrane, to which many phenomena with physiological significance as well as biophysical interest can be ascribed. In this thesis, we concentrate on investigating the electrostatic properties of lipid membranes. First, we study how the electrostatic interaction affects their preferred structure. To this end, we adopt a coarse-grain model that preserves the dominant characteristics of the lipids, in which the electrostatic interaction is treated within the “renormalized” Debye-H¨uckel theory. In particular, we calculate the spontaneous curvature of a phospholipid monolayer, along with other associated quantities. Our results suggest that such divalent ions as Mg2+ can stabilize HII phases of lipids (inverted hexagonal phases), which would otherwise form lamellar phases. Second,we investigate the competitive binding of ions and cationic peptides onto a monolayer of lipopolysaccharide (LPS) molecules, a class of highly charged bio-molecules found in the outer leaflet of the outer membranes of gram-negative (G-) bacteria. Cationic anti-microbial peptides (AMPs) can selectively kill bacteria, and it is suggested that they destabilize the LPS layer, easing their permeation across it, a process of great physiological and clinical interest. To this end, we model the LPS layer as a collection of charged “binding sites”, based on which we study the binding of cations (monovalent and divalent) and cationic peptides onto the layer. Our calculations suggest that the peptides can compete with divalent ions on the binding to the layer. It has been empirically known that since the stability of an LPS layer relies greatly on the bridging of divalent ions, the substitution of these ions by the peptides significantly compromises its stability. Our results offer a quantitative basis for this observation, thus providing a possible mechanism of an important step in the action of AMPs against G- bacteria.

Naja naja atra Cardiotoxins (CTXs), basic polypeptides of 60 amino acid residues adopt a three-fingered loop-folding topology and show cytotoxicity for human tissues in targeting cell membrane. Despite having highly similar sequence, the six CTX isoforms also display different cytotoxic potencies and hemolytic activities. The goal of these studies is to explore the mechanical processes that involved in membrane-damaging activities of CTXs on vesicles composed of different cell membrane components, and to delineate the events that lead to different biological activities of CTXs. The studies were performed by estimating the color transformation of phospholipid/polydiacetylene vesicles and the fluorescence enhancement of fluorescein-labeled phospholipid/protein or fluorescein released from vesicles. It was found that vesicles consisted of unsaturated phospholipids improve membrane-damaging activity of CTXs and adopt a vital membrane-bound conformation of CTXs. In contract, the characteristic of vesicles consisted of saturated phospholipids was against CTXs adopting an essential membrane-damaging structure. It was also found that not only electrostatic force but also hydrophobic force were involved in the interaction between CTXs and membrane. Comparing with phosphatidylcholine-only vesicles, CTXs displayed higher membrane-damaging activity for the sphingomyelin-containing vesicles, and the loop2 region of CTXs play a crucial role for the membrane-damaging activity of sphingomyelin-containing vesicles. Besides, the CTX3 and CTX5 would interact with the H-antigen of blood group O red blood cells, but only the binding of CTX3 with H-antigen reduce its membrane-damaging activity for red blood cells membrane. Moreover, the fusogenicity of CTXs is responsible for the membrane-damaging activity of CTXs toward bacterial membrane-mimicking vesicles. The cardiolipin have the potency to improve the fusogenicity of CTX3, which induced the bactericidal activity toward the cardiolipin-containing bacterium.