New generations of ultrashort and intense laser pulses as well ashigh power synchrotron radiation sources and x-ray free electronlasers have promoted fast developments in nonlinear optics andx-ray spectroscopy.The new experimental achievements and the appearance of varieties of novelnonlinear phenomena call for further development of theories. The objective of this thesis is to develop and apply thetheories to explain existing experimental data and to suggest new experiments. The first part of the thesis is devoted to nonlinear propagation of optical pulses. It is shown that the vibrational levels can be selectively populated by varying the duration, shape and intensity of the pump pulse. We obtained a strict analytical solution for the resonant two-photon interaction in a multilevel system beyond rotating wave approximation. Simulations show that the polarization anisotropy of the two-photon excitation affects strongly the anisotropy of photobleaching.The two-photon area theorem is reformulated with taking into account the dynamical Stark shift and the contribution from the permanent dipole moments. In general the dynamical Stark shift does not allow complete population of the excited state, but it can be compensated by detunings in atoms. A dynamical theory of the sequential two-photon absorption of  microsecond pulses  is developed to explore the role of transverse inhomogeneity of the light beam on optical limiting properties.  The propagation of ultrashort laser pulses in nondipolar and dipolar media is investigated with special attention to the generation of superfluorescence and supercontinuum and the formation of attosecond pulses. The second part of the thesis addresses the interaction of molecules with x-ray radiation.  We explore here the role of nuclear dynamics in resonant Auger scattering. Multimode simulations of the Auger spectra of ethylene molecule explain the main spectral features of the experimental spectra and show that the spectral profiles are formed mainly due to six vibrational modes. We predict the Doppler splitting of the atomic peak in resonant Auger scattering from SF6 molecule for circularly polarized x-rays. This effect is confirmed by the recent experiment. A new scheme of x-ray pump-probe spectroscopy, namely, resonant inelastic x-ray scattering accompanied by core-hole hopping induced by strong laser fields is suggested. The laser-induced promotion of core holes opens the symmetry forbidden scattering channels and gives rise to new spectral lines in the x-ray scattering spectrum. The strength of the symmetry forbidden lines becomes strong when  the time of Rabi flopping is shorter than the lifetime of the core-excited state. We study the role of propagation of femtosecond x-ray free-electron pulses on the Auger process. Simulations show  that there exists a strong competition between Auger decay and stimulated emission. The Auger yield and Auger branching ratio are strongly suppressed in the course of pulse propagation. / QC 20100729

Synchrotron-based sulfur spectroscopy reveals a common concern for marine archaeological wood from seawater: accumulation of reduced sulfur compounds in two pathways. The distribution of sulfur species in the oak wood cell structure was mapped by scanning x-ray spectro-microscopy (SXM). Organically bound sulfur was found within lignin-rich parts, identified mainly as thiols and disulfides by sulfur K-edge x-ray absorption near edge structure (XANES) spectroscopy. Particles of iron sulfides, which may form in the presence of corroding iron, appeared in wood cavities. Cores scanned by x-ray fluorescence (XRF) show that high sulfur accumulation is restricted to the surface layers for the Swedish shipwreck Vasa, while the distribution is rather uniform throughout the hull timbers of the Mary Rose, U.K. Laboratory experiments, exposing fresh pine to simulated seabed conditions, show that the organically bound sulfur develop in reactions between lignin, exposed by cellulose-degrading erosion bacteria, and hydrogen sulfide produced in situ by scavenging sulfate reducing bacteria. With bacteria inoculated from shipwreck samples also iron sulfides formed. The iron sulfides oxidise in high humidity, and are the probable main cause of the numerous outbreaks on the Vasa’s hull of acidic sulfate salts, which were identified by x-ray powder diffraction (XRD). The iron ions catalyse several wood-degrading oxidative processes. Multi-elemental analyses were performed by scanning electron microscopy (SEM) and x-ray photoelectron spectroscopy (ESCA). The present amounts of total S remaining in the Vasa and the Mary Rose are estimated to at least 2 tonnes. After the Vasa´s spray treatment with polyethylene glycol solutions ceased in 1979, the continuing oxidation processes are estimated to have produced 2 tonnes of sulfuric acid in the wood. Laboratory experiments to gently neutralize acidic Vasa wood by ammonia gas have been conducted with promising results.

<p>Silicon ceramics are popular in both commercial applications and material research. The purpose of this thesis is to present measurements and analysis of four different silicon ceramics: á, â and ã phases of silicon nitride and silicon oxynitride using soft x-ray spectroscopy, which analyses the electronic structure of materials by measuring the absorption and emission of x-ray radiation. Absorption and emission spectra of these materials are presented, many of which have not be previously documented. The results are compared to model spectra and together they provide information about the electronic structure of the material.</p><p>Assignments of emission features to element, orbital, and site symmetry are performed for each material. Combinations of silicon and nitrogen emission spectra provide insight into the strained bonding structure of nitrogen. It is concluded that p-dð interaction plays a role in the bonding arrangement of nitrogen and oxygen sites within these structures. The emission features of non-equivalent silicon sites within ã-Si3N4 are identified, which represents some of the first analysis of same element, non-equivalent sites in a material.</p><p>Silicon absorption and emission spectra were plotted on the same energy scale to facilitate measurement of the band gap. Since previously measured band gaps are not well represented in literature, the measured band gaps were compared to values predicted using DFT calculations. The band gap values are in reasonable agreement to calculated values, but do not vary as widely as predicted.</p>

Presented here is a study of the electronic properties and molecular stacking structure of four novel X-shaped anthracene based organic semiconductors utilizing near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and density functional theory (DFT) calculations. These materials have been found to exhibit high charge carrier mobility when used in organic thin film transistors without an annealing step. Angle resolved NEXAFS show local molecular order through polarization dependence in C 1s → π* transitions, and that the plane of the anthracene core is oriented nearly normal to the plane of the substrate. DFT calculations were used examine electronic structure and the effects of molecular geometry, showing that the highest occupied molecular orbital (HOMO) conjugation extends to the thiophene end groups. The attachment of the thiophene end group is determined to modify intermolecular interaction, resulting in either a cofacial or herringbone structure. With the understanding of how these materials form an ordered crystal structure, future fabrication of new materials may be directed towards a preference for crystallization without annealing. A study with applications for organic photovoltaic devices was also undertaken to examine the thin film stacking structure of [6,6]-phenyl-C61-butyric acid methyl ester (PCBM). NEXAFS measurements show that the side chain lifts the energy degeneracy of the C60 molecular orbitals around the chain attachment. This breaks the spatial π -orbital symmetry of the lowest unoccupied molecular orbital (LUMO) of the C60 backbone which is observed through polarization dependence of π* transitions. The intensity dependence is further analyzed to determine the bulk crystal structure of PCBM.

Analysis of the electronic structures of nitrogen-doped, amorphous carbon samples and of nanodiamond films are carried out in order to determine their sp2 bonding concentration. The amorphous carbon samples under consideration are deposited onto polytetrafluoroethylene (PTFE) polymer substrates by hot wire plasma sputtering of graphite in varying nitrogen concentration atmospheres. The deposition or modification of the substrates surface may lend itself to increasing hardness and wear resistance. Eventually these polymer substrates may be used for applications in the field of biomaterials, focusing on cardiovascular surgery, where a low blood/surface interaction is important. The primary technique used in this study is x-ray absorption spectroscopy, measured at the Advanced Light Source synchrotron at the Lawrence Berkeley National Laboratory, Berkeley, USA. A method of analyzing these spectra was then developed to determine the sp2 bonding concentrations in carbon films. Through this newly developed analysis method, the sp2 bonding concentrations in these samples increases from 74 to 93% with growing nitrogen doping. The diamond films presented here are deposited on silicon wafer substrates in a methane atmosphere by microwave plasma deposition. Various deposition conditions, such as bias voltage and methane atmosphere concentration, affect the purity of the diamond film. This analysis reveals sp2 bonding concentrations in these samples from, typically, a few percent to 25%.

Presented here is a study of the electronic properties and molecular stacking structure of four novel X-shaped anthracene based organic semiconductors utilizing near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and density functional theory (DFT) calculations. These materials have been found to exhibit high charge carrier mobility when used in organic thin film transistors without an annealing step. Angle resolved NEXAFS show local molecular order through polarization dependence in C 1s → π* transitions, and that the plane of the anthracene core is oriented nearly normal to the plane of the substrate. DFT calculations were used examine electronic structure and the effects of molecular geometry, showing that the highest occupied molecular orbital (HOMO) conjugation extends to the thiophene end groups. The attachment of the thiophene end group is determined to modify intermolecular interaction, resulting in either a cofacial or herringbone structure. With the understanding of how these materials form an ordered crystal structure, future fabrication of new materials may be directed towards a preference for crystallization without annealing. A study with applications for organic photovoltaic devices was also undertaken to examine the thin film stacking structure of [6,6]-phenyl-C61-butyric acid methyl ester (PCBM). NEXAFS measurements show that the side chain lifts the energy degeneracy of the C60 molecular orbitals around the chain attachment. This breaks the spatial π -orbital symmetry of the lowest unoccupied molecular orbital (LUMO) of the C60 backbone which is observed through polarization dependence of π* transitions. The intensity dependence is further analyzed to determine the bulk crystal structure of PCBM.

Of great benefit, but not limited to seafloor mineral exploration, is a technique that fairly rapidly determines the composition of a drilled vibracore (in a time comparable to the time involved in obtaining the core). The rapid assessment is desired to predict whether a given region warrants further exploration by coring. A proposed monitoring system, based on neutron capture gamma ray analysis, consists of a container tank filled with water and tubular extensions that house a Cf-252 neutron source and a detector positioned within the tank. The core sample is passed through the system in stop and count steps. The net count rates, due to "signature" capture gamma rays from neutron capture in elements in the core sample, are proportional to the amount of the element responsible for emitting the capture gamma ray. The proposed system was modeled and simulated by the Monte Carlo method to predict the relationship between the response of the detector and the elemental concentrations within the sample. Accurate and detailed treatment of neutron transport and gamma ray production and attenuation within the system were employed not only to predict the relationship of the photopeak responses with respect to elemental concentrations, but also to permit investigation of the design parameters and structural material changes in the system. The developed Monte Carlo code utilizes a variety of variance reduction techniques, such as implicit absorption with Russian Roulette and deterministic production of the gamma rays of interest, along with a form of correlated sampling to predict simultaneously the responses over a range of interest of the elemental concentrations. The predicted results were compared with predictions obtained from a well established general purpose Monte Carlo code (MCNP). / Graduation date: 1990

We focus on determining the underlying physical cause of a Seyfert galaxy's appearance as type a 1.8 or 1.9. Are these "intermediate" Seyfert types typical Seyfert 1 nuclei reddened by central dusty tori or by nuclear dust lanes/spirals in the narrow-line region? Or, are they similar to NGC 2992, objects that have intrinsically weak continua and weak broad emission lines? Our study compares measurements of the reddenings of the narrow and broad-line regions with each other and with the X-ray column derived from XMM Newton 0.5-10 keV spectra to determine the presence and location of dust in the line of sight for a sample of 35 Seyfert 1.8s and 1.9s. From this, we find that Seyfert 1.9s are an almost equal mix of low-flux objects with unreddened broad line regions, and objects with broad line regions reddened by an internal dust source, either the torus or dust structures on the same size scale as the narrow line region. The 1.9s that recieved this designation due to a low continuum flux state showed variable type classifications. All three of the Seyfert 1.8s in our study are probably in low continuum states. Many objects have been misclassified as Seyfert 1.8/1.9s in the past, probably due to improper [N II]/H-alpha deconvolution leading to a false detection of weak broad H-alpha.

Analysis of the electronic structures of nitrogen-doped, amorphous carbon samples and of nanodiamond films are carried out in order to determine their sp2 bonding concentration. The amorphous carbon samples under consideration are deposited onto polytetrafluoroethylene (PTFE) polymer substrates by hot wire plasma sputtering of graphite in varying nitrogen concentration atmospheres. The deposition or modification of the substrates surface may lend itself to increasing hardness and wear resistance. Eventually these polymer substrates may be used for applications in the field of biomaterials, focusing on cardiovascular surgery, where a low blood/surface interaction is important. The primary technique used in this study is x-ray absorption spectroscopy, measured at the Advanced Light Source synchrotron at the Lawrence Berkeley National Laboratory, Berkeley, USA. A method of analyzing these spectra was then developed to determine the sp2 bonding concentrations in carbon films. Through this newly developed analysis method, the sp2 bonding concentrations in these samples increases from 74 to 93% with growing nitrogen doping. The diamond films presented here are deposited on silicon wafer substrates in a methane atmosphere by microwave plasma deposition. Various deposition conditions, such as bias voltage and methane atmosphere concentration, affect the purity of the diamond film. This analysis reveals sp2 bonding concentrations in these samples from, typically, a few percent to 25%.

<p>Silicon ceramics are popular in both commercial applications and material research. The purpose of this thesis is to present measurements and analysis of four different silicon ceramics: á, â and ã phases of silicon nitride and silicon oxynitride using soft x-ray spectroscopy, which analyses the electronic structure of materials by measuring the absorption and emission of x-ray radiation. Absorption and emission spectra of these materials are presented, many of which have not be previously documented. The results are compared to model spectra and together they provide information about the electronic structure of the material.</p><p>Assignments of emission features to element, orbital, and site symmetry are performed for each material. Combinations of silicon and nitrogen emission spectra provide insight into the strained bonding structure of nitrogen. It is concluded that p-dð interaction plays a role in the bonding arrangement of nitrogen and oxygen sites within these structures. The emission features of non-equivalent silicon sites within ã-Si3N4 are identified, which represents some of the first analysis of same element, non-equivalent sites in a material.</p><p>Silicon absorption and emission spectra were plotted on the same energy scale to facilitate measurement of the band gap. Since previously measured band gaps are not well represented in literature, the measured band gaps were compared to values predicted using DFT calculations. The band gap values are in reasonable agreement to calculated values, but do not vary as widely as predicted.</p>