Photosynthetic electron transport produces ATP and NADPH which support carbon fixation by the Calvin Cycle. To avoid over-reduction of the electron transport chain, plants must balance absorption and consumption of light energy. Mitochondrial alternative oxidase (AOX) is a non-energy-conserving electron sink, making it an ideal candidate to oxidize excess reductant and regulate chloroplastic redox state. Wild-type (WT) and transgenic Nicotiana tabacum lines with enhanced or suppressed AOX protein levels were grown under low light (LL) and moderate light (ML). LL-grown plants were also shifted to ML. AOX transcript and protein levels were enhanced in WT plants under ML. Chlorophyll fluorescence, gas exchange, and contents of chlorophyll, carbohydrate, and malondialdehyde were measured. Lack of AOX protein decreased Photosystem II (PSII) quantum efficiency and CO2 assimilation rates while enhancing PSII excitation pressure compared to WT. These findings suggest a role for AOX in mediating the chloroplast-mitochondrion relationship during acclimation to higher irradiance.

Modern biorefineries provide a framework for the sustainable conversion of biomass to biofuels and biochemicals. In light of the recalcitrance of lignin in woody feedstocks, the native shrub eastern leatherwood is proposed as a model hypolignified species. Xylem tissue of this low-lignin plant contained syringyl-rich lignin that was more easily hydrolysed and did not appear to be localised in the middle lamellae. Also, leatherwood cellulose was less crystalline and the xylan was highly acetylated. While viable low-lignin plants will enable the sustainable utilisation of woody feedstocks, high-value bioproducts are needed to economise future biorefineries. The carbohydrate oxidoreductases galactose oxidase and glucooligosaccharide oxidase were studied for use in the oxidation and derivatisation of plant-derived polysaccharides for the production of such high-value bioproducts. The carbohydrate-binding module of galactose oxidase was necessary for recombinant protein production. Also, a mutant library of glucooligosaccharide oxidase variants was produced to generate enzymes with novel activity.

Polyploidization is exceptionally cosmopolitan in plants. One common observation is that polyploids inhabit larger geographic distributions than their diploid progenitors. Differences in distribution between cytotypes are largely attributed to differences in mating system and ecological breadth among cytotypes. In Crataegus series Douglasianae, allopolyploids have larger ranges than their diploid progenitors. Range size increase is coupled with a shift to predominant asexuality in polyploids. This thesis explores 2 additional hypotheses that may contribute to differences in distribution among cytotypes: ecological breadth and dispersal ability. We find evidence that tetraploid C. douglasii occurs in a wider range of habits and has a greater dispersal ability than diploid C. suksdorfii. Overall, we suggest that differences in mating system, ecological breadth, and dispersal ability have contributed individually and collaboratively to differences in distribution among cytotypes of Crataegus series Douglasianae. Large ranges in polyploids may help maintain cytotype diversity by providing buffering capacity against demographic stochasticity.

Flowering plants possess striking variation in reproductive traits and mating patterns, even among closely related species. In this thesis, I investigate morphological variation, mating and genetic diversity of five taxa of bird-pollinated Babiana (Iridaceae), including two species with specialized bird perches. Field observations in 12 populations demonstrated that sunbirds were the primary pollinators. Babiana ringens exhibited correlated geographic variation in flower and perch size. Controlled field pollinations revealed self-compatibility and low pollen limitation in B. ringens subspecies, and self-incompatibility and chronic pollen limitation in B. hirsuta. Allozyme markers demonstrated moderate to high selfing rates among populations and considerable variation in levels of genetic diversity. In B. ringens there was a positive relation between the geographic and genetic distance of populations. The results of a manipulative field experiment indicated position-dependent herbivory on inflorescences of B. hirsuta and this could play a role in the evolution of specialized bird perches in Babiana.

Photosynthetic electron transport produces ATP and NADPH which support carbon fixation by the Calvin Cycle. To avoid over-reduction of the electron transport chain, plants must balance absorption and consumption of light energy. Mitochondrial alternative oxidase (AOX) is a non-energy-conserving electron sink, making it an ideal candidate to oxidize excess reductant and regulate chloroplastic redox state. Wild-type (WT) and transgenic Nicotiana tabacum lines with enhanced or suppressed AOX protein levels were grown under low light (LL) and moderate light (ML). LL-grown plants were also shifted to ML. AOX transcript and protein levels were enhanced in WT plants under ML. Chlorophyll fluorescence, gas exchange, and contents of chlorophyll, carbohydrate, and malondialdehyde were measured. Lack of AOX protein decreased Photosystem II (PSII) quantum efficiency and CO2 assimilation rates while enhancing PSII excitation pressure compared to WT. These findings suggest a role for AOX in mediating the chloroplast-mitochondrion relationship during acclimation to higher irradiance.

Modern biorefineries provide a framework for the sustainable conversion of biomass to biofuels and biochemicals. In light of the recalcitrance of lignin in woody feedstocks, the native shrub eastern leatherwood is proposed as a model hypolignified species. Xylem tissue of this low-lignin plant contained syringyl-rich lignin that was more easily hydrolysed and did not appear to be localised in the middle lamellae. Also, leatherwood cellulose was less crystalline and the xylan was highly acetylated. While viable low-lignin plants will enable the sustainable utilisation of woody feedstocks, high-value bioproducts are needed to economise future biorefineries. The carbohydrate oxidoreductases galactose oxidase and glucooligosaccharide oxidase were studied for use in the oxidation and derivatisation of plant-derived polysaccharides for the production of such high-value bioproducts. The carbohydrate-binding module of galactose oxidase was necessary for recombinant protein production. Also, a mutant library of glucooligosaccharide oxidase variants was produced to generate enzymes with novel activity.

Polyploidization is exceptionally cosmopolitan in plants. One common observation is that polyploids inhabit larger geographic distributions than their diploid progenitors. Differences in distribution between cytotypes are largely attributed to differences in mating system and ecological breadth among cytotypes. In Crataegus series Douglasianae, allopolyploids have larger ranges than their diploid progenitors. Range size increase is coupled with a shift to predominant asexuality in polyploids. This thesis explores 2 additional hypotheses that may contribute to differences in distribution among cytotypes: ecological breadth and dispersal ability. We find evidence that tetraploid C. douglasii occurs in a wider range of habits and has a greater dispersal ability than diploid C. suksdorfii. Overall, we suggest that differences in mating system, ecological breadth, and dispersal ability have contributed individually and collaboratively to differences in distribution among cytotypes of Crataegus series Douglasianae. Large ranges in polyploids may help maintain cytotype diversity by providing buffering capacity against demographic stochasticity.

Biological invasions provide opportunities to study evolutionary processes occurring during contemporary time scales. Here, I combine a literature review of common garden studies of invasive plant species, with field and glasshouse experiments on populations of the outcrossing, perennial, wetland invader Lythrum salicaria (purple loosestrife - Lythraceae), to investigate the evolutionary genetics of local adaptation in reproductive and life-history traits. A review of 32 common garden studies of 28 introduced species identified previously unrecognized latitudinal clines in phenotypic traits in both native and introduced populations. To obtain direct evidence for clinal variation and local adaptation, I investigated populations of L. salicaria sampled along a latitudinal gradient of growing season length in eastern North America. Controlled pollinations of plants from 12 populations provided no evidence for the breakdown of self-incompatibility to self-compatibility towards the northern range limit. However, a quantitative genetic experiment involving 20 populations revealed latitudinal clines in population mean, variance and skew for days to flower and vegetative size. Broad-sense estimates of genetic variance were significant for most traits; however, strong inter-correlations among traits suggested that fitness trade-offs have constrained population divergence. The observed clines supported a model of selection for early flowering in northern populations constrained by a trade-off between age and size at flowering. A comparison of variance-covariance matrices of family and population means (G and D, respectively) of life-history traits demonstrated that populations have evolved in response to selection under genetic constraints, rather than through neutral processes. A reciprocal transplant experiment involving six populations and three common gardens spanning the latitudinal range provided direct evidence for local adaptation in flowering phenology. Populations maintained the same rank-order for time to flowering and vegetative size at each site, and southern populations had the highest fecundity at the southern site but the lowest at the northern site. Finally, a phenotypic selection analysis in each common garden involving 61 F2 families of crosses between a northern × southern populations confirmed that selection favours earlier flowering in northern populations. These results demonstrate that natural selection on reproductive phenology has accompanied the invasive spread of L. salicaria in eastern N. America.

The relationship between an organism’s genome, developmental stage, and environment is complex. The aim of the research presented herein was to provide experimental evidence to contribute to the annotation of the P. trichocarpa genome and to test two major hypotheses addressing the interaction between drought and time of day in A. thaliana and in two hybrid Populus clones. In order to generate data to address these aims, three separate experiments were undertaken. First, all members of the R2R3-MYB family of transcription factors in the P. trichocarpa genome were characterised by phylogenetic analysis and their transcript accumulation patterns across a range of tissues and organs were assessed using whole genome poplar microarrays. Results of this analysis indicated that expansion and diversification of the R2R3-MYB family may have contributed to phenotypic innovation in the Populus lineage. Second, drought-responsive transcriptome adjustments of two hybrid poplar clones, DN34 (P. deltoides X P. nigra) and NM6 (P. nigra X P. maxiomowiczii) were assessed for time-of-day and genotype dependent patterns. For each genotype, each of four time points was characterised by discrete sets of drought-responsive genes. Furthermore, while a number of genes were identified that were responsive to drought in both genotypes, a much larger number of genotype-dependent, drought-responsive transcriptome changes were detected. Finally, the drought-responsive transcriptome adjustments A. thaliana plants were assessed for time-of-day dependent accumulation patterns. Results of this analysis indicate that time-of-day-dependent differences in the drought response were manifest as changes of different magnitudes for a conserved set of genes across the four time points measured. These results emphasise the complex interplay of a plant’s genome, developmental stage, and environment in shaping the observed transcriptome.

Seed maturation is an important process that is evolutionarily advantageous, allowing for seed dispersal and germination under favourable growth conditions. The B3-domain transcription factor FUSCA3 (FUS3) is a master regulator of seed maturation and controls developmental phase transitions through hormonal regulation in Arabidopsis thaliana. The aim of this study was to determine the post-translational regulation of FUS3 during embryonic and vegetative development. Here, FUS3 was found to interact with the E3 ubiquitin ligase ABI3-INTERACTING PROTEIN2 (AIP2) in yeast two-hybrid, in vitro, and in planta assays. Analysis of transcriptional and translational reporters also showed overlapping spatial and temporal expression patterns of AIP2 and FUS3. Furthermore, in vitro FUS3 degradation was delayed in aip2-1 mutant and increased FUS3-GFP levels were observed during mid-embryogenesis in aip2-1. Finally, double transgenic plants overexpressing AIP2 and FUS3 showed reduced FUS3 levels and reversion of the gain-of-function FUS3 phenotypes back to WT. Together, these results indicate that AIP2 is a negative regulator of FUS3.