A better understanding of the fundamental role large woody debris (LWD) plays within mangrove ecosystems may provide further insights into important ecological processes, such as wood degradation and biodiversity maintenance within mangrove forests.Though the volume of fallen wood in mangrove forests can be huge, little is known of the breakdown pathways and biodiversity maintenance of LWD in mangrove ecosystems. The degree of mangrove fauna dependent upon LWD and the need for such substratum in mangrove ecosystems may provide further insights in to the important role of woody biomass in these otherwise globally shrinking habitats due to forest harvesting. The breakdown, recycling and flux of nutrients from LWD within mangrove forests is maintained by biodegrading organisms in areas from terrestrial to marine habitats. The tidal inundation sets limits on the wood degrading communities within the mangrove forests of Sulawesi. This study presents details of the environmental and biological association of biodegrading organisms within the forests in the Wakatobi Marine Park (WMP), Sulawesi. Wood boring animals belonging to the family Teredinidae are the dominant biodegraders of LWD in the mid- to low intertidal areas of the mangrove forests. Teredinid attack greatly reduces the volume of LWD in the mid- to low intertidal areas of the forests. Within the forests, emersion time was the greatest influence of the distribution of the biodegrading organisms spanning from the supra-tidal down to the low intertidal. The response of Rhizophora stylosa prop-roots to physical damage and the activity of teredinids upon damaged prop-roots were investigated. With severe levels of root damage, the level of teredinid activity increases, resulting in root death and detrital input. However, when the roots were exposed to a superficial and moderate level of damage, an over-compensation of tissue re-growth was observed. LWD in the intertidal zone is often tunnelled by teredinids. The tunnels are blind-ending cylinders that taper to a small opening at the wood surface. However, larger openings appear when wood is heavily tunnelled and the surface is broken open. Teredinid death then leaves niches for cryptofauna. The greater the number of teredinid tunnels within LWD, the more diversity was found. Animals of particular interest were the dartfish, Parioglossus interruptus and the intertidal spider, Desis martensi found in the vacant teredinid tunnels. Desid spiders were abundant within the LWD and dartfish collected from within teredinid-attacked LWD were smaller than dartfish populations not within LWD. Desids and dartfish residing within the wood may benefit from the significantly lower temperatures within teredinid-attacked detritus compared to external air temperatures. Desis martensi has a life-history strategy centred on strong parental care, with lots of energy invested in to its young. Vulnerable stages of dartfish exploit the vacant teredinid tunnels. If it were not for the tunnels created by the teredinids the unusual behaviour adopted by dartfish and spiders would not be possible. Thus, many animals in mangrove forests of the WMP rely on LWD as a predation refuge enhanced by the teredinid tunnels within the LWD. A variety of different species were found inside teredinid attacked LWD, and the cryptic behaviour of the fauna ranged from breeding to predator avoidance. These findings indicate that in forests where wood is harvested, reduced availability of LWD will result in reduced biodiversity.

Les forêts de mangrove contribuent de manière significative au flux d'énergie, au cycle des nutriments et du carbone dans l'océan côtier, étant un puits pour le CO2 atmosphérique. Les forêts de mangroves sont très productives et stockent une quantité élevée de carbone à la fois dans leurs sols et dans leur biomasse.Au cours de la décomposition de la litière, les nutriments et le carbone peuvent être recyclés ou exportés vers les écosystèmes adjacents par l'action des marées. La mangrove de Can Gio (Ho Chi Minh Ville, Vietnam), dégradée par l'épandage de défoliants pendant la guerre du Vietnam, a pu être restaurée grâce à la replantation et à la régénération naturelle. À ce jour, la forêt de mangrove de Can Gio est la plus grande forêt de mangrove contiguë au Vietnam, et est devenue la première réserve biosphère UNESCO dans ce pays. L'objectif principal de cette thèse était de caractériser le cycle du carbone dans la forêt de mangrove tropicale.Les résultats de cette thèse ont permis de:- Développer des équations allométriques permettant d’estimer la biomasse aérienne de la forêt plantée de mangroves de l’espèceRhizophora apiculatadans le sud du Vietnam;- Calculer les stocks de carbone totaux dans différents peuplements de mangrove se développant sous le climat tropical du sud du Vietnam;- Caractériser les taux de décomposition de la litière et évaluer la dynamique des nutriments et des métaux traces au cours des processus de dégradation de la litière, ainsi que l'évolution de δ13C pendant la décomposition;- Déterminer la variabilité saisonnière des flux de CO2 à différentes interfaces: sol-air, eau-air et tronc-air, et caractériser les profils de concentration en CO2 dans la canopée. / Mangrove forests significantly contribute to energy flow, nutrient and carbon cycling in the coastal ocean, being a sink for atmospheric CO2. Mangroves forests are highly productive and store high amount of carbon both in their soils and in their biomass. During leaf litter decomposition, nutrients and carbon can be recycled or exported to adjacent ecosystems by the tidal action. Can Gio mangrove, degraded by the spraying of defoliants during the Vietnam War, successfully recovered through replantation and natural regeneration after 40 years. To date, the Can Gio mangrove forest is the largest contiguous mangrove forest in Vietnam, and became the first Mangrove Biosphere Reserve in this country. The main objective of this PhD thesis was to characterize carbon cycling within the Can Gio mangrove forest, which is a tropical one.The results of this PhD thesis allowed to: - Develop allometric equations and to estimate the aboveground biomass of Rhizophora apiculata Blume planted mangroves forest in Southern Vietnam; - Calculate the total carbon stocks in different mangrove stands developing under the tropical climate of Southern Vietnam; - Characterize the leaf litter decomposition rates, and assess nutrients and trace metals dynamics during litter decay processes, as well as the evolution of δ13C during decay; - Determine the seasonal variability CO2 fluxes at different interfaces: soil-air, water-air and trunk-air, and to characterize CO2 concentrations profiles in the canopy.

La compréhension des processus contrôlant le fonctionnement des mangroves est capitale au vu des services socio-économiques/écosystémiques rendus par ces écosystèmes et des menaces qu’ils subissent. En Guyane Française, les mangroves se développent rapidement en réponse aux contraintes sédimentaires récurrentes induites naturellement par les apports sédimentaires amazoniens. Cette thèse étudie la structure et la composition de trois classes de taille de communautés benthique (méso, macro, mégafaune), et les activités de bioturbation associées (remaniement sédimentaire biologique : RS, terriers) dans les jeunes stades de mangrove. 51 taxons de méso-macrofaune et 12 espèces de crabes (mégafaune) ont été identifiés. Bien que la biodiversité benthique soit spécifique à l'âge de la mangrove, des taxons tolèrent les modifications brusques du milieu, et cette persistance maintient des fonctions clés du remaniement sédimentaire tout au long du développement des mangroves. L’intensité du RS varie le long de ce gradient (21-146 g PS.m-2.cycle tidal-1). Si les crabes dominent le RS, cette thèse souligne la contribution effective de la méso-macrofaune aux transports particulaires. Les communautés benthiques montrent des capacités de bioturbation adaptées aux instabilités récurrentes du littoral. Les variations du RS au cours du temps pourraient indiquer l’état fonctionnel des mangroves. Cette étude conclut que l’hétérogénéité morpho-sédimentaire au sein des jeunes stades de mangroves influence la structuration spatiale des crabes, le remaniement sédimentaire qu’ils induisent, et la morphologie des terriers. Les microhabitats devraient être considérés lors de l'évaluation du rôle fonctionnel de la faune benthique des mangroves. / Understanding the processes that control mangroves functioning is essential regarding the socioeconomic/ecosystemic services these ecosystems provide and the increasing threats they suffer. In French Guiana, mangroves grow rapidly in response to natural sedimentary perturbations caused by sediment inputs from the Amazon River. This thesis characterizes the structure and the composition of benthic fauna communities (three size classes: meso-, macro- and megafauna) and the associated bioturbation activities (biological sediment reworking: SR, burrows) in mangrove early growth stages. 51 meso- macrofaunal taxa and 12 crab (megafauna) species were identified.Despite a mangrove age specific biodiversity, some taxa tolerate abrupt environmental changes, and such persistence maintains key sediment reworking functions along mangrove development.The SR intensity varies along this gradient from 21 to 146 g DW.m-2.tidal cycle-1. Burrower crabs dominate the SR but this thesis also outlines the non-negligible contribution of smaller-sized (meso- and macrofauna) organisms to particulate transport. Benthic communities’ bioturbation capacities are adapted to recurrent environmental instabilities. Changes of the biologicallyinduced SR may be used as a proxy of the functional status of mangrove ecosystems. This study concludes that morpho-sedimentary heterogeneity of early-growth mangrove stages influences crab spatial structuration, the crab-induced sediment reworking and burrow shapes. Thus, microhabitat specificities should be considered when evaluating the role of benthic fauna in mangroves ecosystem functioning.

La mangrove est un écosystème complexe qui se développe sur les zones intertidales, le long des littoraux (sub)tropicaux. Dû à sa production primaire élevée, couplée à une grande capacité de séquestration du carbone organique, la mangrove a été nommée écosystème à « Carbone Bleu ». Toutefois, le changement climatique à venir, et particulièrement les augmentations en CO2 atmosphérique et en température ainsi que la hausse du niveau marin, pourraient modifier son fonctionnement. Dans de ce contexte, les objectifs étaient de (i) comprendre comment les variations eustatiques passées ont pu impacter les stocks de carbone enfouis dans les sols de mangrove, afin de mieux prévoir l’effet de la future hausse du niveau marin, (ii) caractériser les émissions de CO2 et de CH4 depuis les sols et la colonne d’eau dans la mangrove, et (iii) évaluer l’impact de la hausse des concentrations en CO2 atmosphérique et de la durée d’immersion sur la physiologie de plantules de palétuviers. L’augmentation des concentrations CO2 atmosphérique modifiera la productivité des palétuviers, notamment en stimulant leur activité photosynthétique, facilitant ainsi leurs capacités à coloniser de nouveaux espaces disponibles du fait de la hausse des océans. Cette hausse aura également un effet conséquent sur les stocks de carbone dans les sols, comme nous l’avons montré pour les variations eustatiques de l’Holocène tardif, impliquant également une migration des strates de mangrove. Finalement, les émissions de CO2 et de CH4 vers l’atmosphère sont non négligeables, tout particulièrement celles émises depuis la colonne d’eau, qui devront être pris en compte dans les futurs bilans carbone de l’écosystème. / Mangroves are complex and unique ecosystems that develop on intertidal areas along (sub)tropical coastlines. Due to their position, they are considered as major ecosystems in the coastal carbon cycle. Thanks to their high primary productivity, coupled with a high carbon sequestrating capacity in both biomass and soils, mangroves have been called “Blue Carbon” ecosystems. However, future climate change, and particularly increases in atmospheric CO2 concentrations, temperatures and sea-level rise, may alter its functioning. Within this context, the objectives were to (i) understand how eustatic variations may have impacted soil carbon stocks by the past, in order to better predict the effects of future sea-level rise, (ii) characterize CO2 and CH4 emissions from the soil and also from the water column within the mangrove forest, and (iii) evaluate the impact of future increase in atmospheric CO2 concentrations and in sea-level may affect the physiology of young mangrove seedlings. Increases in atmospheric CO2 concentrations will modify either the seedlings productivity and photosynthetic activity, therefore facilitating their ability to colonize new accommodation spaces due to the rising sea-level. This increase in sea-level will also have a consequent impact on soil carbon stocks, as we showed for the past eustatic variations of the late Holocene, also implying a migration of mangroves stands. Eventually, CO2 and CH4 emissions to the atmosphere were non-neglectable, particularly the one emitted from the water column.