Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Rice husk is a subproduct of the food industry, rich in carbohydrates, which can be partially fractionated and converted into fermentable sugars. In this work, it was investigated the best conditions for the conversion of the residual biomass, rice husks, into succinic acid, an important start molecule for the synthesis of the chemo-pharmaceutical industry. With the goal of the separation of lignin and transformation of cellulose and hemicellulose into sugars, the rice husks were submitted, initially, to acid hydrolysis, in autoclave and in pressurized polytetrafluoroethylene reactor. The hydrolysis conditions were optimized by factorial design for the pressurized acid hydrolysis; temperature, time and acid catalyst concentration (HCl or H2SO4) were evaluated. For the acid hydrolysis in autoclave, it was optimized the ratio rice husks mass: acid volume, time and concentration of HCl or H2SO4. It was observed that the sugar production by using autoclave was lower than by the pressurized hydrolysis system, needing further concentration of the hydrolysate for the subsequent fermentation step. The best results were obtained with the polytetrafluoroethylene reactor, by 59 bar, with HCl 0,26 mol L-1, at 175°C and reaction time of 46 min, yielding 19.0 g L- 1 of glucose and 3.01 g L- 1 of xylose. The efficiency of different detoxification methods of the hydrolyzed rice husk were evaluated; the combined method of pH adjustment plus adsorption on active carbon was the most effective by eliminating inhibitors, without appreciable reduction of the sugar concentration. The detoxified hydrolysate was sterilized and adjusted at pH 7 and fermented with A. succinogenes at 37 ° C, in anaerobic medium, occurring the conversion of the two main monosaccharides, glucose and xylose, into succinic acid. The nutrient concentration and the agitation rate of the medium were also optimized by factorial design. As a result, after 54 h of static fermentation, the hydrolysate was supplemented with 8.40 g L-1 yeast extract and 1.40 g L -1 of NaHCO3, to yield 59.9% succinic acid. Almost all of the sugar at this time was consumed and converted to succinic acid; at the same time, acetic and formic acid are formed, but, in low concentrations related to the production of succinic acid, not compromising the yield of the process. For the succinic acid extraction and purification, the fermentate was submitted to the solid phase extraction procedure; cartridges with different extraction phases were tested, and among them, the ion exchange one was the only effective, with recoveries up to 96%. After solid phase extraction, the eluted solution, containing 12.05 g L- 1 succcinic acid, was lyophilized, and crystals of succinic acid with 80.7% (m m- 1) were obtained. The raw material used in the bioprocess has no commercial value, representing a zero cost carbon source, which reveals itself adequate to the succinic acid production by fermentation with A. succinogenes, after hydrolysis. The use of the residual rice husk can contribute to the mitigation of the environmental impact resulting from the illegal discharge in the environment. / A casca de arroz é um subproduto da indústria de alimentos, rico em carboidratos, que pode ser fracionada e, parcialmente, convertida em açúcares fermentescíveis. Neste trabalho, investigou-se as melhores condições para a conversão da biomassa residual, casca de arroz, em ácido succínico, importante insumo para a síntese industrial farmoquímica. Com o objetivo de separação da lignina e transformação da celulose e da hemicelulose em açúcares, a casca de arroz foi submetida, inicialmente, à hidrólise ácida em autoclave e em reator de politetrafluoretileno, à pressão. As condições de hidrólise foram otimizadas através de planejamento fatorial, sendo avaliado na hidrólise ácida pressurizada, a influência da temperatura, do tempo e da concentração do catalisador ácido (HCl ou H2SO4); já, na hidrólise em autoclave, otimizou-se a relação massa de casca de arroz : volume de solução ácida, tempo e concentração de HCl ou H2SO4. Observou-se que a produção de açúcares em autoclave é inferior à do sistema de hidrólise à pressão, necessitando, inclusive, concentração do hidrolisado para utilização na etapa fermentativa. Os melhores resultados foram obtidos com o reator de politetrafluoretileno, à pressão de 59 bar, com 0,26 mol L-1 de HCl, temperatura de 175 °C e tempo de reação de 46 min, produzindo-se 19 g L-1 de glicose e 3,01 g L-1 de xilose. Avaliou-se a eficiência de diferentes métodos de destoxificação do hidrolisado de casca de arroz, sendo o método combinado, de ajuste de pH seguido de adsorção em carvão ativado, o mais eficaz na eliminação de inibidores, sem redução apreciável da concentração de açúcares. O hidrolisado destoxificado foi esterilizado, ajustado a pH 7 e fermentado com A. succinogenes, à 37 ºC, em meio anaeróbio, ocorrendo a conversão dos monossacarídeos predominantes, glicose e xilose, em ácido succínico. A concentração dos nutrientes e a velocidade de agitação do meio também foram otimizadas por meio de planejamento fatorial. Após 54 h de fermentação estática do hidrolisado, suplementado com 8,40 g L-1 de extrato de levedura e 1,40 g L-1 de NaHCO3, o rendimento em ácido succínico foi de 59,9%. Praticamente, toda a concentração de açúcar é consumida neste tempo e convertida em ácido succínico; simultaneamente, formam-se ácido acético e fórmico, porém, em baixas concentrações em relação à produção de ácido succínico, não comprometendo o rendimento do processo. Para a extração e purificação do ácido succínico, o fermentado foi submetido ao procedimento de extração em fase sólida; cartuchos com diferentes fases extratoras foram testados, e, dentre eles, somente o de troca iônica se mostrou efetivo, com recuperação de até 96,0%. Após a extração, o eluido da extração em fase sólida, contendo 12,0 g L-1 de ácido succínico foi liofilizado, obtendo-se cristais com pureza de 80,7% (m m-1). A matéria-prima utilizada no bioprocesso, casca de arroz, não tem valor comercial, representando fonte de carbono de custo zero, que se revelou adequada à produção de ácido succínico por meio de fermentação com A. succinogenes, após hidrólise. O aproveitamento da casca de arroz residual pode contribuir para a mitigação do impacto ambiental resultante da disposição ilegal no ambiente.

Succinic acid is a compound used for manufacturing lacquers, resins, and other coating chemicals. It is also used in the food and beverage industry as a flavor additive. It is predominantly manufactured from petrochemicals, but it can also be produced more sustainably by fermentation of sugars from renewable feedstocks (biomass). Bio-based succinic acid has excellent potential for becoming a platform chemical (building block) for commodity and high-value chemicals. In this study, we focused on the production of bio-based succinic acid from the fiber of sweet sorghum (SS), which has a high fermentable sugar content and can be cultivated in a variety of climates and locations around the world. To avoid competition with food feedstocks, we targeted the non-edible ‘bagasse’, which is the fiber part after extracting the juice. Initially, we studied various conditions of pretreating SS bagasse to remove most of the non-fermentable portions and expose the cellulose fibers containing the fermentable sugars (glucose). Concentrated (83%) phosphoric acid was utilized at mild temperatures of 50-80 °C for 30-60 minutes at various bagasse loadings (10-15%) using a partial factorial experimental design. After pretreatment, the biomass was subjected to enzymatic hydrolysis with commercial cellulase enzyme (Cellic® Ctec2) to identify the pretreatment conditions that lead to the highest glucose yield that is critical for the production of succinic acid via fermentation with the bacterium Actinobacillus succinogenes. As the pretreatment temperature and duration increased, the bagasse color changed from light brown to dark brown-black, indicating decomposition, which ranged from 15% to 72%. The pretreatment results were fitted with an empirical model that identified 50 °C for 43 min at 13% solids loading as optimal pretreatment conditions that lead to the highest glucose release from sweet sorghum bagasse. Biomass pretreated at those conditions and subjected to separate enzymatic hydrolysis and fermentation with A. succinogenes yielded almost 18 g/L succinic acid, which represented 90% of the theoretical yield, a very promising performance that warranties further investigation of bio-based succinic acid production from sweet sorghum bagasse, as a more sustainable alternative to succinic acid produced from fossil sources, such as oil.

Please read the abstract in the section front of this document. / Dissertation (MEng)--University of Pretoria, 2012. / Chemical Engineering / unrestricted

Actinobacillus succinogenes cells were grown on Poraver® support particles in a packed-bed reactor. Dilution rates (D) of 0.054–0.72 h-1 were investigated. Glucose was used as substrate. CO2 (g) was bubbled into a complex medium to satisfy the fixation requirements and maintain anaerobic conditions. At D ≥ 0.31 h-1, an initial glucose concentration of 35 g.L-1 was used; at lower dilution rates, this was increased to 60 g.L-1 in order to avoid substrate limitations. By-product formation included acetic and formic acids. A maximum productivity of 10.7 g.L-1 was obtained at D = 0.7 h-1. It was found that the system provided repeatable results at a given D. The longest steady state period was maintained for about 97 h at D = 0.31 h-1. Steady state stability was maintained for > 72 h at D < 0.31 h-1. For periods longer than 75 h, however, inhibitory acid titres resulted in a gradual decline in productivity. At higher dilution rates, long-term stability could not be maintained. The low acid titres produced significant biofilm sloughing following aggressive biofilm growth, resulting in oscillatory system behaviour. For fermentation times < 115 h, the dilution rate was secondary to the attachment area in determining the total biomass at steady state. Total biomass values were then used to determine specific rates. A clear trend was observed, with the specific glucose consumption rate, and specific acid production rates, increasing with increasing D. This was explained by assuming a maintenance-driven system at all Ds studied. A product analysis indicated that at ΔS < 15 g.L-1, pyruvate formate lyase was the preferred oxidative route. A shift to the pyruvate dehydrogenase pathway occurred at higher ΔS values, so that the highest YSS values obtained exceeded 0.85 g.g-1. A decrease in C3 by-product formation resulted in high YSS values being maintained, indicating an additional, unknown source of nicotinamide adenine dinucleotide (NADH). It is recommended that any process utilising immobilised A. succinogenes cells should operate at an intermediate D, in order to maintain long-term reactor stability, high productivities and good yields. / Dissertation (MEng)--University of Pretoria, 2013. / gm2014 / Chemical Engineering / unrestricted

Continuous fermentations were performed in a novel external-recycle, biofilm reactor using D-glucose and CO2 as carbon substrates. Corn steep liquor (CSL) and yeast extract (YE) served as nitrogen sources. In anaerobic fermentations using medium containing CSL and YE, succinic acid (SA) yields were found to be an increasing function of glucose consumption. The ratio of SA to the major by-product, acetic acid (YAASA), increased from 2.4 g g-1 at a glucose consumption of 15 g L-1, to 5.7 g g-1 at a glucose consumption of 46 g L-1. For medium containing no CSL, YAASA remained near 1.97 g g-1, exceeding this for cases where biofilm grown on CSL-containing medium was present. The ratio of formic acid to acetic acid (YAAFA), for CSL-containing medium, decreased from an equimolar value (0.77 g g-1) at a glucose consumption of 10 g L-1 to zero at 46 g L-1 glucose consumed. In contrast, YAAFA for YE-only medium remained at 0.77 g g-1. Therefore, pyruvate was metabolised solely by pyruvate-formate lyase when no CSL was present. The highest SA yield obtained on glucose, SA titre and SA productivity were 0.91 g g-1, 48.5 g L-1 and 9.4 g L-1 h-1, respectively, all for medium containing CSL. Medium that included CSL significantly outperformed medium that excluded CSL, achieving 64%, 21% and 203% greater SA titres, yields on glucose and productivities respectively. Metabolic flux analyses based on the established C3 and C4 metabolic pathways of Actinobacillus succinogenes revealed that the increase in YAASA, for CSL-containing fermentations, could not be attributed to the decrease in formate and biomass formation, and that an additional source of reducing power was present. The fraction of reducing power (NADH) unaccounted for increased with glucose consumption, suggesting that the maintenance or non-growth metabolism encountered at higher SA titres differs from the growth metabolism. It is postulated that the additional reducing power originates from an active pentose phosphate pathway in non-growing cells or from an undetected component(s) in the fermentation medium. No major metabolic flux variations were found in fermentations that excluded CSL. / Dissertation (MEng)--University of Pretoria, 2013. / gm2014 / Chemical Engineering / unrestricted

Biofilms of Actinobacillus succinogenes, grown in a biofilm reactor system, were investigated for structure and cell viability, through microscopic visualisation with a confocal scanning laser microscope (CSLM) and a scanning electron microscope (SEM). Biofilms were sampled and visualised at steady state conditions with the broth containing succinic acid titres between 15 and 21 g/L. All sampled biofilm was 6 days old. Six-day-old biofilms of A. succinogenes showed a heterogeneous biofilm architecture composed of cell micro-colony pillars which varied considerably in thickness, area and shape. Microcolony pillars consisted of a densely packed entanglement of sessile cells. Quantitative analysis revealed that the pillars were mostly large, with a mean pillar diameter of 170 m and a mean thickness of 92 m, although pillar diameter and thickness were variable as they ranged from 25 – 500 m and 30 – 300 m, respectively. In the regions close to the substratum surface, pillars were characterised by having defined borders with a network of channels ranging from 40 – 200 m in width separating them. However, towards the middle of the biofilm depth some of the pillars coalesced. For this reason low cross sectional area coverage of biofilm consistently occurred at the bottom portion of the biofilm whilst the highest coverage was in the middle portion of the biofilm. Regarding cell morphology, very large differences were observed. Planktonic cells were rod-shaped, whereas sessile cells expressed an elongated rod morphology and thus were much longer and thinner compared with planktonic cells. Planktonic cells were 1 – 2 m thick and 4 – 5 m long, while sessile cells were 0.5 – 1 m thick and 5 – 100 m long. Long sessile cells resulted in extensive tangling in microcolony pillars, which may have contributed to the structural stability of the pillars. Fibre-like connections of constant diameter were observed between cells, and between the cells and surface. The diameter of these connections was approximately 20 – 30 nm. Viability stains showed that in the bottom portion (from 0 - 20 m above the substratum surface) of the biofilm, most of the cells were dead. However, the portion of covered area attributed to living cells increased past the middle of the biofilm towards the top part of the biofilm. A high percentage of living cells was thus found towards the top part of the biofilm. Overall, 65% (with 2% standard deviation) of the entire biofilm was composed of dead cells. In this way, the results show that operation at high acid conditions comes at a cost of low overall biomass productivity due to decreased active biomass. / Dissertation (MEng)--University of Pretoria, 2017. / Chemical Engineering / MEng / Unrestricted

Biofilms of the bovine rumen bacterium Actinobacillus succinogenes have demonstrated their exceptional capabilities as biocatalysts for high productivity, titre and yield production of succinic acid (SA). Succinic acid is set to become a significant building block chemical in the biobased economy. Although substantial progress has been made towards understanding the productive aspect of this microorganism with regard to its metabolic limits and performance on unrefined biorefinery stream substrates, more research is still required to address other challenges. One aspect is to understand how the biofilm biocatalyst is affected by bioreactor conditions, which would help in developing stable and highly active biofilms. For this reason the aim of this thesis was (i) to characterise how the accumulation of acid metabolites in continuous operation impacts A. succinogenes biofilms with respect to biofilm development, biofilm structure and cell activity within the biofilm, (ii) to show how shear conditions in the fermenter can be used to manipulate the biofilm structure and viable cell content of biofilms, leading to improved cell-based succinic acid productivities, and lastly (iii) to investigate the internal mass transfer effects on biofilm performance, further showing the role played by differences in shear and acid accumulation conditions in this respect. The first part of the study addressed the interaction between the biofilm and the accumulation of metabolites produced. The results showed that biofilms of A. succinogenes develop rapidly and with high activity when cultivated under low product accumulation (LPA) conditions (< 10 g L-1 SA). High product accumulation (HPA) conditions considerably slowed down biofilm development, and increased cell mortality. Under HPA conditions some cells exhibited severe elongation while maintaining a cross-sectional diameter like the rod/cocci-shaped cells predominantly found in LPA conditions. The elongated cells formed in HPA conditions were found to be more viable and thus more resistant than the clusters of rod-shaped or cocci-shaped cells. The global microscopic structure of the HPA biofilms also differed significantly from that of the LPA biofilms. Although both exhibited shedding after 4 days of growth, the LPA biofilms were more homogenous (less patchy), thicker and had high viability throughout the biofilm depth. In the second part of the study, two custom-designed bioreactors were used to evaluate the effect of shear on the biofilms. The first bioreactor allowed for in situ removal of small biofilm samples used for microscopic imaging. The second bioreactor allowed for complete removal of all biofilm and was used to analyse biofilm composition and productivity. Results clearly indicated that high shear biofilm cultivation in LPA conditions has beneficial morphological, viability and cell-based productivity characteristics. The smooth, low-porosity biofilms obtained under high shear and LPA conditions had an average cell viability of 79% (over a 3-day cultivation period) compared with the low shear value of 57%, also developed under LPA conditions. The EPS content of the high shear biofilm was 58% compared with 7% of the low shear equivalent. The cell-based (EPS excluded) succinic acid productivity for the high shear biofilm was 2.4 g g-1DCW h-1 compared with the 0.8 g g-1DCW h-1 for the low shear biofilm. This threefold increase in productivity obtained from the second bioreactor corresponded to the cell viability differences obtained from the first bioreactor. Clear evidence was provided for shear-induced shaping of the biofilm which resulted in improved volumetric glucose turnover attributes within the biofilm matrix. The last section of the study investigated internal mass transfer effects in biofilm fermentations of Actinobacillus succinogenes by performing batch fermentations using attached and resuspended biofilms as biocatalysts. In the latter, the biofilms were resuspended after initial development to simulate mass transfer-free fermentations. Intrinsic kinetics for succinic acid production obtained from resuspended fermentations predicted faster production rates than for the attached biofilm runs (biofilm thicknesses in the range of 120–200 µm), indicating internal mass transfer limitations. A developed biofilm reaction diffusion model gave good prediction of attached biofilm batch operation results by accounting for internal mass transfer in the biofilm. Biofilm effectiveness factors ranged from 75% to 97% for all batches at the inception of batch conditions, but increased with the progression of batch operation due to the increased succinic acid titres which inhibited the production rates. Analysis of pseudo-steady-state continuous fermentation data from the literature, as well as from the second part of the study, using the model developed, showed that active biofilm thickness and effectiveness factors were dependent on the shear conditions and succinic acid titres in the biofilm reactors. A simplified algorithm was developed to estimate the pseudo-steady-state glucose penetration and biofilm effectiveness of A. succinogenes biofilms without the requirement to solve the overall mass transfer model. The results clearly showed that internal mass transfer needs to be considered in biofilm fermentations involving A. succinogenes as high biomass concentrations may not always equate to increased productivities if mass transfer effects dominate. / Thesis (PhD)--University of Pretoria, 2020. / NRF / Chemical Engineering / PhD / Unrestricted